Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lipotes_20vexillifer_20[refseq_20GCF_5F000442215.1_202013-07-31] 30,713 sequences; 2,429,212,129 total letters Query= NC_027995.1 Length=41666 Score E Sequences producing significant alignments: (Bits) Value seq12372 109 1e-19 seq7504 87.8 5e-13 >seq12372 Length=38393 Score = 109 bits (120), Expect = 1e-19 Identities = 190/273 (70%), Gaps = 5/273 (2%) Strand=Plus/Plus Query 41205 GATCCAGAAATCCGTTACATGCCAAGCGGCGGCGCGGTTGCTAATCTAAGCATCGCCACA 41264 || || ||| |||||||| |||||| |||| |||||| |||| || ||| | ||||| Sbjct 38034 GACCCCGAAGTCCGTTACCTGCCAAACGGCAACGCGGTAACTAACCTCAGCCTGGCCACC 38093 Query 41265 ACTGAAAGCTGGAAGGATAAAACCACCGGCGAGAAGAAAGAACAAACGGAATGGCACCGC 41324 | || |||| || || ||||| ||||| || | || || ||||||||| Sbjct 38094 AGCGAGCAGTGGACCGACAAGCAAACCGGGCAGAAGGTCGAGCGCACCGAGTGGCACCGC 38153 Query 41325 GTTGTC-ATCTTCGGTAAGCTGGCAGAAATTGCTAGCGAATACCTGCGCAAAGGTAGCAA 41383 | |||| | ||||| ||| |||| || || || |||| ||||||||||||||| | | Sbjct 38154 G-TGTCGTTGTTCGGCAAGGTGGCCGAGATCGCCGGCGAGTACCTGCGCAAAGGTTCCCA 38212 Query 41384 GGTGTTCATTGAAGGCAGCCTGCGAACGCGTAAATGGCAGGACCAGGCTGGCGTTGATCG 41443 | ||| ||||||| |||| ||| || | || ||| ||| ||| | | || Sbjct 38213 ATGCTACATCGAAGGCAAGCTGCAAACCCGCGAGTG---GGAGAAGGACGGCATCAAGCG 38269 Query 41444 CTACACCACTGAAATCAACGTGGGCATGAATGG 41476 |||||||||||||||| || | ||| || || Sbjct 38270 TTACACCACTGAAATCATTGTCGACATCAACGG 38302 >seq7504 Length=9783 Score = 87.8 bits (96), Expect = 5e-13 Identities = 192/281 (68%), Gaps = 9/281 (3%) Strand=Plus/Plus Query 41199 GGCAACGATCCAGAAATCCGTTACATGCCAAGCGGCGGCGCGGTTGCTAATCTAAGCATC 41258 ||| | ||||| ||| |||| ||| |||| | ||| || || | || || ||| | Sbjct 2843 GGCCAGGATCCCGAAGTCCGCTACCTGCCCAACGGTAATGCCGTGACCAACCTGAGCCTG 2902 Query 41259 GCCACAACTGAAAGCTGGAAGGATAAAACCACCGGCGAGAAGAAAGAACAAACGGAATGG 41318 || || | || |||| || || | ||| ||||| || | || |||||| Sbjct 2903 GCAACCAGCGAGCAATGGACCGACAAGCAGTCGGGCCAGAAGGTCGAGCGTACCGAATGG 2962 Query 41319 CACCGCGTTGTC-ATCTTCGGTAAGCTGGCAGAAATTGCTAGCGAATACCTGCGCAAAGG 41377 ||||| | |||| | ||||| ||| | || || ||||| |||| |||||||||||||| Sbjct 2963 CACCGTG-TGTCGCTGTTCGGCAAGGTTGCTGAGATTGCCGGCGAGTACCTGCGCAAAGG 3021 Query 41378 -TAGCAAGGTG-TTCATTGAAGGCAGCCTGCGAACGCGTAAATGGCAGGACCAGGCTGGC 41435 | ||| ||| | ||| ||||||| |||| || ||| | || ||| | | ||| Sbjct 3022 TTCGCA--GTGCTACATCGAAGGCAAGCTGCAGACCCGTGAGTG---GGAAAAAGACGGC 3076 Query 41436 GTTGATCGCTACACCACTGAAATCAACGTGGGCATGAATGG 41476 | | ||||||||||||||||||| ||| | ||| || || Sbjct 3077 ATCAAGCGCTACACCACTGAAATCATCGTTGACATCAACGG 3117 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 133161016210968