Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lipotes_20vexillifer_20[refseq_20GCF_5F000442215.1_202013-07-31] 30,713 sequences; 2,429,212,129 total letters Query= NC_027996.1 Length=175720 Score E Sequences producing significant alignments: (Bits) Value seq16031 100 3e-16 >seq16031 Length=34897 Score = 100 bits (110), Expect = 3e-16 Identities = 162/232 (70%), Gaps = 1/232 (0%) Strand=Plus/Minus Query 8868 ACAAATGAAAACGACATAGTAATGGAtttttttGCGGGAAGTGGCACTACTCTAGCCGTT 8927 || |||||||| || ||||| | |||||| | || ||||| || || || | Sbjct 1803 ACTAATGAAAATGATTTAGTATTAGATTTTCATCTAGGCAGTGGAACGACGTGTGCGACT 1744 Query 8928 GCTCATAAAATGAAACGCAAATGGATAGGCATAGAACAAATGGATTATATAGAAACTATC 8987 |||||||||||| ||| || || || |||||||| ||||| ||||| | || Sbjct 1743 GCTCATAAAATGGGACGTCGATATATTGGTATAGAACAGATGGACTATATCAATGAAATT 1684 Query 8988 ACAAAAGAAAGACTCaaaaaaaGTCATAGAAGGTGAGCAAGGTGGTATCAGCAAAGCAAT 9047 || | | || | |||||||||| |||||||||||||| || ||| |||| | Sbjct 1683 ACCGTACCTCGCCT-ACAAAAAGTCATTGAAGGTGAGCAAGGGGGGATCTCTAAAGATGT 1625 Query 9048 AAATTGGCAAGGTGGTGGAAATTTTGTTTATGCTGAACTTATGCCTTTAAAT 9099 || |||||||| ||||||| ||| || || |||| |||||| |||||| Sbjct 1624 GAAATGGCAAGGCGGTGGAAGTTTCGTCTACACTGAGCTTATGGAATTAAAT 1573 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 561960173606400