Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lipotes_20vexillifer_20[refseq_20GCF_5F000442215.1_202013-07-31] 30,713 sequences; 2,429,212,129 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq18312 100 4e-16 seq20687 84.2 3e-11 >seq18312 Length=6437 Score = 100 bits (110), Expect = 4e-16 Identities = 279/418 (67%), Gaps = 14/418 (3%) Strand=Plus/Plus Query 14017 AATCTTCTCGCGACCGCGCACACTGGGTAGGGACACGGTGATCTTACGATCAAAGCGACC 14076 ||||| ||| ||||| || | || ||| ||| || || ||| || |||||||| Sbjct 1097 AATCTGCTCACGACCCCGAATGTCCGGCAGGCCAACGACGACCTGACGGTCGAAGCGACC 1156 Query 14077 TGGGCGGAGGAGGGCGTCGTCAAGGATATCAATGCGGTTCGTCGCCGCGATGACAACGAT 14136 ||||| || || || ||| |||| ||| |||||| ||||| |||||||| | ||| Sbjct 1157 GGGGCGCAGCAGCGCAGGGTCGAGGACGTCAGGGCGGTTGGTCGCGGCGATGACGATGAT 1216 Query 14137 GCC--CGTCTCGTTATCAAAGCCATCCATCTCAGTCAAGAGTTGATTGATGGTTTGTTCG 14194 ||| ||| || | || ||||| |||||||| || | || |||| ||| || || Sbjct 1217 GCCATCGT-TCATC-TCGAAGCCGTCCATCTCTACCAGCAACTGGTTGAGGGTCTGCTCA 1274 Query 14195 CGTTCATCATT---CGCAGGCATACCACCCGCACTGCGTTGCTTACCGACGGCGTCAATT 14251 || || || | | | ||| ||| |||| || || ||||||||||| || Sbjct 1275 CGCTCGTCGTGGCCCCCGCCCATGCCA---GCACCACGGTGACGGCCGACGGCGTCGATC 1331 Query 14252 TCATCGATGAAAACGATACATGGTTGATT-TTCACGGGCAACTTCAAAGATATCTCGCAC 14310 || |||||||| | ||| || || | ||| || | || | || || || || || Sbjct 1332 TCGTCGATGAAGATGATGCAAGGGGCGTGCTTCTTGGCCTGCT-CGAACATGTCGCGTAC 1390 Query 14311 TCTCTTGGCACCGACACCCACAAACATCTCCACAAAATTGGCGGCGGAACATTG-GATGA 14369 | ||||||||||||| || ||||| || || || | | ||||| || | || || Sbjct 1391 ACGGCTGGCACCGACACCGACGAACATTTCAACGAAGTCCGACCCGGAA-ATGGTGAAGA 1449 Query 14370 AGGGGACGTTAGATTCACCCGCGATGGCTCGGGCGAGGAGGGTCTTCCCCGTCCCTGG 14427 | || || || | || || || || || ||| || |||||||| || || || || Sbjct 1450 ACGGCACCTTGGCCTCGCCTGCAATAGCCTTGGCCAGCAGGGTCTTACCGGTACCGGG 1507 >seq20687 Length=1308170 Score = 84.2 bits (92), Expect = 3e-11 Identities = 135/192 (70%), Gaps = 4/192 (2%) Strand=Plus/Minus Query 118375 CTGGCGATCCCTCAAATGTCTCATATGGGCCCTCAACCTCCGCCAATTCGGAGCTCGCCT 118434 |||| || |||||| | || ||||||||||| | ||| |||||||| |||| || | Sbjct 994471 CTGGAGAGCCCTCATAGGTTTCATATGGGCCATACTCCTTGGCCAATTCACAGCTGGCTT 994412 Query 118435 CGAGGGCTGCGTGATACATTGTTTCAAAAATGCGAGCATTCATTGCCTTGGCCTCGTCGG 118494 | | |||| | | ||| || |||||||| || | ||||| | || |||||| ||| Sbjct 994411 CCAAGGCTCCATAATAAATGGTTTCAAAGATCTGCTTATTCAATAACTGGGCCTC--CGG 994354 Query 118495 A--ATCAAACGCGAGTCGGCACAAAATAAATACATCCGCGAGACCTTGGACACCGAGGCC 118552 | ||||| | | | || |||||| |||| || |||||||| || || | || Sbjct 994353 ACTCTCAAAAGGGTACCTCATCAGAATAAAAGCATCTGCCAGACCTTGTACCCCAATTCC 994294 Query 118553 AATTGGGCGATG 118564 ||| |||||||| Sbjct 994293 AATGGGGCGATG 994282 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618197774996280