Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lipotes_20vexillifer_20[refseq_20GCF_5F000442215.1_202013-07-31] 30,713 sequences; 2,429,212,129 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq8764 138 1e-27 seq22728 104 3e-17 seq20974 89.7 6e-13 seq23097 82.4 8e-11 >seq8764 Length=4089 Score = 138 bits (152), Expect = 1e-27 Identities = 243/350 (69%), Gaps = 13/350 (4%) Strand=Plus/Minus Query 124553 CTGCAACATAAGCCACATGGCTTGGACGTAGTCCTCTGCGTGCCCCCAGTCGCGCTTGGC 124612 ||||| ||| |||||||| ||| |||||| |||| || ||||||||||||||||| Sbjct 1043 CTGCAGCATGCGCCACATGCCTTCGACGTATTCCTTGGCAAAGCCCCAGTCGCGCTTGGC 984 Query 124613 ATCCAGGTTTCCGAGCTCGATTGGCTTGGCC-----GTCTTGTTCCA-CTCCGCCAAACC 124666 || ||||| || || || | ||||| || | | ||| | || || | || Sbjct 983 GTCGAGGTTGCCCAGTTCCA---GCTTGTCCAGCAGGCCCAGTTTGATCTTGGCGA--CC 929 Query 124667 CAGT--GTAATCTTGCGCGTCACAAACTCGGAACCGCGTCGCTCAGACTCGTGGTTGAAC 124724 ||| || |||||||| ||||| ||||| ||||| | ||||||||||||||| Sbjct 928 GAGTCGGTGATCTTGCGGGTCACGAACTCACGGCCGCGCAGGGGCGACTCGTGGTTGAAC 869 Query 124725 AGAATGCCAGTACACGCAAACATCCCGTACGACTCGCGGTAGTTTTTCGTCATCCAATAC 124784 || ||||| | || || | |||||||||||||||||| | |||||||| | Sbjct 868 AGGATGCCGCTGGTGGCGAAGAGGTTGTACGACTCGCGGTAGTTGATGGTCATCCAGTGG 809 Query 124785 CCAAAGAGCTTGGACACGCCATAGGGGCTTCGGGGGTAGAATGGGGTGTTTTCATTTTGG 124844 | | ||||||| ||| || || ||||| || |||||||| |||||| |||| || Sbjct 808 GCGTACAGCTTGGCCACACCGTACGGGCTACGCGGGTAGAACGGGGTGGTTTCGACCTGC 749 Query 124845 GTAGGTTGCTGAATCTTCCCAAACATCTCCGAAGTACCCGCCTGATAGAA 124894 | || ||| | ||| || ||||| || || || ||||| ||||| Sbjct 748 GGGATTTCCTGCACCTTGCCGAACATTTCGGAGGTGGAGGCCTGGTAGAA 699 Score = 132 bits (146), Expect = 5e-26 Identities = 202/285 (71%), Gaps = 11/285 (4%) Strand=Plus/Minus Query 159004 TGGAGCATGAGCCACATGGCCTCGACGTAATCCTGCGCGTGACCCCAGTCGCGCTTGGCA 159063 || |||||| |||||||| | |||||||| |||| || ||||||||||||||||| Sbjct 1042 TGCAGCATGCGCCACATGCCTTCGACGTATTCCTTGGCAAAGCCCCAGTCGCGCTTGGCG 983 Query 159064 TCCATGTTCCCGAGCTCGATGACTTTTCCAGA-----CTTTTTCCACTCAGCCAGACCGA 159118 || | ||| || || || | ||| ||||| | ||| || || |||||| Sbjct 982 TCGAGGTTGCCCAGTTCCAG--CTTGTCCAGCAGGCCCAGTTTGATCTTGGC--GACCGA 927 Query 159119 GC--GTGATCTTGCGCGTCACAAACTCTGCTCCGCGCCGTTCCGACTCATGGTTAAACAG 159176 | ||||||||||| ||||| ||||| |||||| | |||||| ||||| ||||| Sbjct 926 GTCGGTGATCTTGCGGGTCACGAACTCACGGCCGCGCAGGGGCGACTCGTGGTTGAACAG 867 Query 159177 AATGCCGGTACAAGCGAACAGGTTATAGGACTCGCGGTAATTTTTAGTTATCCAGTATCC 159236 |||||| | ||||| ||||| || ||||||||||| || | || ||||||| | Sbjct 866 GATGCCGCTGGTGGCGAAGAGGTTGTACGACTCGCGGTAGTTGATGGTCATCCAGTGGGC 807 Query 159237 AAAGAGCTTGGAGACGCCGTATGGACTCCGAGGATAAAATGGTGT 159281 | ||||||| || ||||| || || || || || || || || Sbjct 806 GTACAGCTTGGCCACACCGTACGGGCTACGCGGGTAGAACGGGGT 762 >seq22728 Length=5450915 Score = 104 bits (114), Expect = 3e-17 Identities = 98/125 (78%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 117305 GTGAAAATGTAACGAGAGCTTGCAGCATCCTTGCCACCAGCAAGACGCGTACCGAATTGT 117364 ||||| ||||| |||| || |||| ||||||||||||| || | ||||| || || Sbjct 4823920 GTGAAGATGTATCGAGGACTAGCAGAATCCTTGCCACCATGCAGCCTGGTACCAAACTGA 4823979 Query 117365 CCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCAAGTTGACA 117424 ||| | |||| |||||||||||| || ||| ||||||||||| |||||||| |||| | Sbjct 4823980 CCAATGGGCTGCAAGAGGTTCAGATTATTGCTACCCACAAAGTTCTGAGCCAAATTGATA 4824039 Query 117425 ATCGT 117429 || || Sbjct 4824040 ATGGT 4824044 Score = 95.1 bits (104), Expect = 1e-14 Identities = 96/125 (77%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 152029 GTGAAGATGTATCGGGAGCTGGCCGCATCCTTGCCACCTGCCAGCCGCGTTCCAAACTGT 152088 |||||||||||||| | || || | |||||||||||| ||||| || |||||||| Sbjct 4823920 GTGAAGATGTATCGAGGACTAGCAGAATCCTTGCCACCATGCAGCCTGGTACCAAACTGA 4823979 Query 152089 CCAGAGGGCTCGAGGAGGTTGAGGTTGTTGGCGCCCACGAAATTCTGAGCCAAATTCACA 152148 ||| ||||| | |||||| || || ||| ||||| || |||||||||||||| | | Sbjct 4823980 CCAATGGGCTGCAAGAGGTTCAGATTATTGCTACCCACAAAGTTCTGAGCCAAATTGATA 4824039 Query 152149 ATCGT 152153 || || Sbjct 4824040 ATGGT 4824044 >seq20974 Length=1049469 Score = 89.7 bits (98), Expect = 6e-13 Identities = 94/124 (76%), Gaps = 0/124 (0%) Strand=Plus/Plus Query 74770 CTTCATCTCTGCTTATCAATTCATTCGAAAACGAAAGGCCAGGCATAAGTCCACGCTTCT 74829 ||||||||||||| || | |||||| ||||| | ||| |||||||||||||| | |||| Sbjct 250903 CTTCATCTCTGCTGATGAGTTCATTGGAAAAAGTAAGTCCAGGCATAAGTCCTCTTTTCT 250962 Query 74830 TCAACCAAAAGATGGCACAGAAGGAACCACTGAAGAAGATGCCTTCGACACACGCAAAGG 74889 | | ||| || || ||| || || || |||||| || ||||| ||| ||||||| Sbjct 250963 TTAGCCAGAATATAGCAGCAAAAGATCCCGAGAAGAAAATTCCTTCTACAGCAGCAAAGG 251022 Query 74890 CGAC 74893 | || Sbjct 251023 CCAC 251026 >seq23097 Length=2458421 Score = 82.4 bits (90), Expect = 8e-11 Identities = 93/125 (74%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 117305 GTGAAAATGTAACGAGAGCTTGCAGCATCCTTGCCACCAGCAAGACGCGTACCGAATTGT 117364 ||||| |||||||||| ||||||||||| ||||| || ||| || || || || || Sbjct 1335666 GTGAATATGTAACGAGGACTTGCAGCATCTTTGCCCCCGTGAAGCCGAGTTCCAAACTGA 1335725 Query 117365 CCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCAAGTTGACA 117424 || | |||| | | ||| | |||||| ||||||||||| ||||||||||| || Sbjct 1335726 CCGATGGGCTGAAGCAAGTTAATGTTGTTACTCCCCACAAAGTTCTGAGCCAAGTTCACG 1335785 Query 117425 ATCGT 117429 || || Sbjct 1335786 ATAGT 1335790 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547005916937400