Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Lipotes_20vexillifer_20[refseq_20GCF_5F000442215.1_202013-07-31]
30,713 sequences; 2,429,212,129 total letters
Query= NC_028110.1
Length=171045
Score E
Sequences producing significant alignments: (Bits) Value
seq8764 138 1e-27
seq22728 104 3e-17
seq20974 89.7 6e-13
seq23097 82.4 8e-11
>seq8764
Length=4089
Score = 138 bits (152), Expect = 1e-27
Identities = 243/350 (69%), Gaps = 13/350 (4%)
Strand=Plus/Minus
Query 124553 CTGCAACATAAGCCACATGGCTTGGACGTAGTCCTCTGCGTGCCCCCAGTCGCGCTTGGC 124612
||||| ||| |||||||| ||| |||||| |||| || |||||||||||||||||
Sbjct 1043 CTGCAGCATGCGCCACATGCCTTCGACGTATTCCTTGGCAAAGCCCCAGTCGCGCTTGGC 984
Query 124613 ATCCAGGTTTCCGAGCTCGATTGGCTTGGCC-----GTCTTGTTCCA-CTCCGCCAAACC 124666
|| ||||| || || || | ||||| || | | ||| | || || | ||
Sbjct 983 GTCGAGGTTGCCCAGTTCCA---GCTTGTCCAGCAGGCCCAGTTTGATCTTGGCGA--CC 929
Query 124667 CAGT--GTAATCTTGCGCGTCACAAACTCGGAACCGCGTCGCTCAGACTCGTGGTTGAAC 124724
||| || |||||||| ||||| ||||| ||||| | |||||||||||||||
Sbjct 928 GAGTCGGTGATCTTGCGGGTCACGAACTCACGGCCGCGCAGGGGCGACTCGTGGTTGAAC 869
Query 124725 AGAATGCCAGTACACGCAAACATCCCGTACGACTCGCGGTAGTTTTTCGTCATCCAATAC 124784
|| ||||| | || || | |||||||||||||||||| | |||||||| |
Sbjct 868 AGGATGCCGCTGGTGGCGAAGAGGTTGTACGACTCGCGGTAGTTGATGGTCATCCAGTGG 809
Query 124785 CCAAAGAGCTTGGACACGCCATAGGGGCTTCGGGGGTAGAATGGGGTGTTTTCATTTTGG 124844
| | ||||||| ||| || || ||||| || |||||||| |||||| |||| ||
Sbjct 808 GCGTACAGCTTGGCCACACCGTACGGGCTACGCGGGTAGAACGGGGTGGTTTCGACCTGC 749
Query 124845 GTAGGTTGCTGAATCTTCCCAAACATCTCCGAAGTACCCGCCTGATAGAA 124894
| || ||| | ||| || ||||| || || || ||||| |||||
Sbjct 748 GGGATTTCCTGCACCTTGCCGAACATTTCGGAGGTGGAGGCCTGGTAGAA 699
Score = 132 bits (146), Expect = 5e-26
Identities = 202/285 (71%), Gaps = 11/285 (4%)
Strand=Plus/Minus
Query 159004 TGGAGCATGAGCCACATGGCCTCGACGTAATCCTGCGCGTGACCCCAGTCGCGCTTGGCA 159063
|| |||||| |||||||| | |||||||| |||| || |||||||||||||||||
Sbjct 1042 TGCAGCATGCGCCACATGCCTTCGACGTATTCCTTGGCAAAGCCCCAGTCGCGCTTGGCG 983
Query 159064 TCCATGTTCCCGAGCTCGATGACTTTTCCAGA-----CTTTTTCCACTCAGCCAGACCGA 159118
|| | ||| || || || | ||| ||||| | ||| || || ||||||
Sbjct 982 TCGAGGTTGCCCAGTTCCAG--CTTGTCCAGCAGGCCCAGTTTGATCTTGGC--GACCGA 927
Query 159119 GC--GTGATCTTGCGCGTCACAAACTCTGCTCCGCGCCGTTCCGACTCATGGTTAAACAG 159176
| ||||||||||| ||||| ||||| |||||| | |||||| ||||| |||||
Sbjct 926 GTCGGTGATCTTGCGGGTCACGAACTCACGGCCGCGCAGGGGCGACTCGTGGTTGAACAG 867
Query 159177 AATGCCGGTACAAGCGAACAGGTTATAGGACTCGCGGTAATTTTTAGTTATCCAGTATCC 159236
|||||| | ||||| ||||| || ||||||||||| || | || ||||||| |
Sbjct 866 GATGCCGCTGGTGGCGAAGAGGTTGTACGACTCGCGGTAGTTGATGGTCATCCAGTGGGC 807
Query 159237 AAAGAGCTTGGAGACGCCGTATGGACTCCGAGGATAAAATGGTGT 159281
| ||||||| || ||||| || || || || || || || ||
Sbjct 806 GTACAGCTTGGCCACACCGTACGGGCTACGCGGGTAGAACGGGGT 762
>seq22728
Length=5450915
Score = 104 bits (114), Expect = 3e-17
Identities = 98/125 (78%), Gaps = 0/125 (0%)
Strand=Plus/Plus
Query 117305 GTGAAAATGTAACGAGAGCTTGCAGCATCCTTGCCACCAGCAAGACGCGTACCGAATTGT 117364
||||| ||||| |||| || |||| ||||||||||||| || | ||||| || ||
Sbjct 4823920 GTGAAGATGTATCGAGGACTAGCAGAATCCTTGCCACCATGCAGCCTGGTACCAAACTGA 4823979
Query 117365 CCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCAAGTTGACA 117424
||| | |||| |||||||||||| || ||| ||||||||||| |||||||| |||| |
Sbjct 4823980 CCAATGGGCTGCAAGAGGTTCAGATTATTGCTACCCACAAAGTTCTGAGCCAAATTGATA 4824039
Query 117425 ATCGT 117429
|| ||
Sbjct 4824040 ATGGT 4824044
Score = 95.1 bits (104), Expect = 1e-14
Identities = 96/125 (77%), Gaps = 0/125 (0%)
Strand=Plus/Plus
Query 152029 GTGAAGATGTATCGGGAGCTGGCCGCATCCTTGCCACCTGCCAGCCGCGTTCCAAACTGT 152088
|||||||||||||| | || || | |||||||||||| ||||| || ||||||||
Sbjct 4823920 GTGAAGATGTATCGAGGACTAGCAGAATCCTTGCCACCATGCAGCCTGGTACCAAACTGA 4823979
Query 152089 CCAGAGGGCTCGAGGAGGTTGAGGTTGTTGGCGCCCACGAAATTCTGAGCCAAATTCACA 152148
||| ||||| | |||||| || || ||| ||||| || |||||||||||||| | |
Sbjct 4823980 CCAATGGGCTGCAAGAGGTTCAGATTATTGCTACCCACAAAGTTCTGAGCCAAATTGATA 4824039
Query 152149 ATCGT 152153
|| ||
Sbjct 4824040 ATGGT 4824044
>seq20974
Length=1049469
Score = 89.7 bits (98), Expect = 6e-13
Identities = 94/124 (76%), Gaps = 0/124 (0%)
Strand=Plus/Plus
Query 74770 CTTCATCTCTGCTTATCAATTCATTCGAAAACGAAAGGCCAGGCATAAGTCCACGCTTCT 74829
||||||||||||| || | |||||| ||||| | ||| |||||||||||||| | ||||
Sbjct 250903 CTTCATCTCTGCTGATGAGTTCATTGGAAAAAGTAAGTCCAGGCATAAGTCCTCTTTTCT 250962
Query 74830 TCAACCAAAAGATGGCACAGAAGGAACCACTGAAGAAGATGCCTTCGACACACGCAAAGG 74889
| | ||| || || ||| || || || |||||| || ||||| ||| |||||||
Sbjct 250963 TTAGCCAGAATATAGCAGCAAAAGATCCCGAGAAGAAAATTCCTTCTACAGCAGCAAAGG 251022
Query 74890 CGAC 74893
| ||
Sbjct 251023 CCAC 251026
>seq23097
Length=2458421
Score = 82.4 bits (90), Expect = 8e-11
Identities = 93/125 (74%), Gaps = 0/125 (0%)
Strand=Plus/Plus
Query 117305 GTGAAAATGTAACGAGAGCTTGCAGCATCCTTGCCACCAGCAAGACGCGTACCGAATTGT 117364
||||| |||||||||| ||||||||||| ||||| || ||| || || || || ||
Sbjct 1335666 GTGAATATGTAACGAGGACTTGCAGCATCTTTGCCCCCGTGAAGCCGAGTTCCAAACTGA 1335725
Query 117365 CCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCAAGTTGACA 117424
|| | |||| | | ||| | |||||| ||||||||||| ||||||||||| ||
Sbjct 1335726 CCGATGGGCTGAAGCAAGTTAATGTTGTTACTCCCCACAAAGTTCTGAGCCAAGTTCACG 1335785
Query 117425 ATCGT 117429
|| ||
Sbjct 1335786 ATAGT 1335790
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 547005916937400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |