Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Lipotes_20vexillifer_20[refseq_20GCF_5F000442215.1_202013-07-31]
30,713 sequences; 2,429,212,129 total letters
Query= NC_028461.1
Length=127011
Score E
Sequences producing significant alignments: (Bits) Value
seq17408 161 8e-35
seq26173 132 4e-26
seq27490 105 5e-18
seq4873 95.1 1e-14
>seq17408
Length=748846
Score = 161 bits (178), Expect = 8e-35
Identities = 134/164 (82%), Gaps = 0/164 (0%)
Strand=Plus/Plus
Query 29942 AGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGT 30001
|| || |||| ||| || |||||||| ||||| || | ||||||||||||||| |||||
Sbjct 535766 AGGCCCGTGATGTGTGCGATCATGTAGGTGAGCAGGGCGTAGCTGGCGATGTTGAAGGGC 535825
Query 30002 ACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCGTCGCTC 30061
|| || || |||||||| || ||||||||||| ||||| || || ||||| |||| |
Sbjct 535826 ACACCCAGGCCCATGTCTCCTGACCTCTGGTACAGCTGGCAGGACAGCTCACCGTTCACC 535885
Query 30062 ACGTAAAACTGACACATGGCGTGGCACGGAGGAAGAGCCATGAG 30105
||||||||||| || | ||||||||||||||| || ||||||||
Sbjct 535886 ACGTAAAACTGGCAAAGGGCGTGGCACGGAGGTAGGGCCATGAG 535929
Score = 91.5 bits (100), Expect = 1e-13
Identities = 121/168 (72%), Gaps = 0/168 (0%)
Strand=Plus/Plus
Query 30223 CATGTCCGTGTACTCTGCTCCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTC 30282
||| || |||| || || || |||||||||||||| || || || || || || | ||
Sbjct 539033 CATATCTTTGTATTCGGCCCCAAAATGCCTCCACTGAAAGCCATAAACTGGGCCTAAATC 539092
Query 30283 TCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTC 30342
|| ||| | ||| ||| ||| ||||||| ||||||| ||| || ||||| |
Sbjct 539093 CCCTTCTGCTCTGGTGGAGAATCCCAGGCTGTCCAAGAAGTCTCGGGACCCATTGGCAGC 539152
Query 30343 CCAGATCTTTACCCCCTTCTCAGAGAGCTCTTTGGAGTTTGTGGACCC 30390
|||||| || || ||||| ||| ||||| || | ||||||||| ||
Sbjct 539153 CCAGATTTTCACTCCCTTGGAAGACAGCTCCTTAGCGTTTGTGGATCC 539200
>seq26173
Length=4939203
Score = 132 bits (146), Expect = 4e-26
Identities = 335/501 (67%), Gaps = 15/501 (3%)
Strand=Plus/Minus
Query 29864 AGCTGAGTCTTCAGCGGTTCCACGTTATCCAGGTAGACGTGAGCGTCTCCCAGGTTGTGG 29923
||||| | |||||| | || || ||||||||| | ||| || ||||||| ||||
Sbjct 2187561 AGCTGCATTTTCAGCAGCTCAGTGTGATCCAGGTAAATGTGTGCATCTCCCAAAGTGTGT 2187502
Query 29924 ACAAACTCTCCCGGTTCTAGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAG 29983
||| | || || || | || || |||| ||| || |||||||| ||||| || | |||
Sbjct 2187501 ACAGAGTCACCTGGCTTCAGGCCTGTGATGTGTGCAATCATGTAGGTGAGCAGGGCATAG 2187442
Query 29984 CTGGCGATGTTAAAGGGTACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACAC 30043
||||||||||| |||| || || || ||| |||| || ||| ||||||| ||||| ||
Sbjct 2187441 CTGGCGATGTTGAAGGACACACCCAGGCCCCTGTCTCCTGACTTCTGGTACAGCTG-CAG 2187383
Query 30044 GAGAGCTCTCCGTCGCTCACGTAAAACTGACACATGGCGTGGCACGGAGGAA-------G 30096
|| || || || |||||| || || || | ||| |||||| | || | |
Sbjct 2187382 GACAG-TCATGGTTCACCACGTAGAAGTGGCAAAGGGCATGGCACAGGGGCAGGGTGGTG 2187324
Query 30097 AGCCATGAGGCCCAAGTCTTTGGGGTTCCAGGCGCACACGATGATGCGCCTGTCTTCTGG 30156
| ||||| | ||||| | ||||| || || | ||||| | |||||||| ||
Sbjct 2187323 GGGTATGAGAGGAAGATCTTT-CGATTCCAAGCACATAGAATGATTCTTCTGTCTTCAGG 2187265
Query 30157 GTTGTTCCTGATGAGGTCCACGGCGTTTTGCAGCTGATCCACCCCCATCCCCGAGTAGTC 30216
|||| | |||| ||| | | |||||||| || || | || || || ||
Sbjct 2187264 GTTGGTTTTGATTGTGTCAATCACCTTTTGCAGTTGGTCTGCTCCTTGACCTGAATAAAT 2187205
Query 30217 TGCCCT-CATGTCCGTGTACTCTGCTCCGAAATGCCTCCACTGGAACCCGTACACCGGTC 30275
| | || || |||| || || | ||| |||||||||| || | || || | |
Sbjct 2187204 TCAAATCCACATCTTTGTATTCGGCCACCAAAAGCCTCCACTGAAAGCTATAAACTAGGC 2187145
Query 30276 CCAGGTCTCCCTCTTCCCTGTGCTCGA-AG-CCCCTCTTGTCCAAAAAGTCTCTGGAACC 30333
| | || || |||| || || | || || || ||||||| ||||||| ||| |
Sbjct 2187144 CTAAATCCCCTTCTT--CTTTGGTGGAGAGTACCAGGCTGTCCAAGAAGTCTCGGGACCT 2187087
Query 30334 GTTGGCGTCCCAGATCTTTAC 30354
|| ||| |||||||| || ||
Sbjct 2187086 GTAGGCATCCCAGATTTTCAC 2187066
>seq27490
Length=5292111
Score = 105 bits (116), Expect = 5e-18
Identities = 182/259 (70%), Gaps = 8/259 (3%)
Strand=Plus/Plus
Query 110379 ATGAGCTCCAGACGGGGGATCTTTAAGCTCCCTGCTGAGGACTACGTTTATCCTGTCTCT 110438
||||||||| || || || || || || || ||||| |||| || || ||||| |
Sbjct 4483402 ATGAGCTCCCTGTGGAGGTTCCTTGAGTTCTCTACTGAGAACTATATTAATTCTGTCCTT 4483461
Query 110439 CAGAGGTCTATTCTTTTCGGGGATGGAGAACCAAGTCTTTCTACCCATTATCACCACGTT 110498
| ||||| |||||| || || ||||||||||| || || |||||||| |||||| ||
Sbjct 4483462 TAAAGGTCGATTCTTCTCTGGAATGGAGAACCAGGTTTTCCTACCCATAATCACCGAATT 4483521
Query 110499 CTGCTTGCCTCTGACTGAAGACGTAGCGGTCAAGGCTCGAAAGTGTTTAAAATCTTTGCA 110558
||| || ||| ||||||| || | ||||| | | || | | | || || |
Sbjct 4483522 CTGTTTACCTTCTCCTGAAGAGGTTGTGGTCATTCTTTGGAAATACCTGTATTCGTTCCT 4483581
Query 110559 AAGTCTCGCAGGATGCCACGGCAGATCTCCGTTGTTCCCGATGCCCATG-TCTGGACACG 110617
|| || ||| |||| ||||| || ||||| || |||||||||||| ||||| |||
Sbjct 4483582 GAG---CG-AGG--GCCAGGGCAGGTCCCCGTTCTTGCCGATGCCCATGTTCTGG-GACG 4483634
Query 110618 CGGCCACGATACCGTTCAG 110636
| || | ||| | ||| ||
Sbjct 4483635 CAGCGATGATGCAGTTTAG 4483653
>seq4873
Length=1786275
Score = 95.1 bits (104), Expect = 1e-14
Identities = 112/152 (74%), Gaps = 0/152 (0%)
Strand=Plus/Plus
Query 110379 ATGAGCTCCAGACGGGGGATCTTTAAGCTCCCTGCTGAGGACTACGTTTATCCTGTCTCT 110438
||||| ||| || || || || || || || ||||| |||| || || ||||| |
Sbjct 1550174 ATGAGGTCCCTGTGGAGGTTCCTTGAGTTCTCTACTGAGAACTATATTAATTCTGTCCTT 1550233
Query 110439 CAGAGGTCTATTCTTTTCGGGGATGGAGAACCAAGTCTTTCTACCCATTATCACCACGTT 110498
| ||||| |||||| || || ||||||||||| ||||| |||||||| ||||||| |
Sbjct 1550234 TAAAGGTCGATTCTTCTCTGGAATGGAGAACCAGGTCTTCCTACCCATAATCACCAAATA 1550293
Query 110499 CTGCTTGCCTCTGACTGAAGACGTAGCGGTCA 110530
||| || ||| ||||||| || | |||||
Sbjct 1550294 CTGTTTACCTTCTCCTGAAGAAGTTGTGGTCA 1550325
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 406158312049596
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |