Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lipotes_20vexillifer_20[refseq_20GCF_5F000442215.1_202013-07-31] 30,713 sequences; 2,429,212,129 total letters Query= NC_028461.1 Length=127011 Score E Sequences producing significant alignments: (Bits) Value seq17408 161 8e-35 seq26173 132 4e-26 seq27490 105 5e-18 seq4873 95.1 1e-14 >seq17408 Length=748846 Score = 161 bits (178), Expect = 8e-35 Identities = 134/164 (82%), Gaps = 0/164 (0%) Strand=Plus/Plus Query 29942 AGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGT 30001 || || |||| ||| || |||||||| ||||| || | ||||||||||||||| ||||| Sbjct 535766 AGGCCCGTGATGTGTGCGATCATGTAGGTGAGCAGGGCGTAGCTGGCGATGTTGAAGGGC 535825 Query 30002 ACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCGTCGCTC 30061 || || || |||||||| || ||||||||||| ||||| || || ||||| |||| | Sbjct 535826 ACACCCAGGCCCATGTCTCCTGACCTCTGGTACAGCTGGCAGGACAGCTCACCGTTCACC 535885 Query 30062 ACGTAAAACTGACACATGGCGTGGCACGGAGGAAGAGCCATGAG 30105 ||||||||||| || | ||||||||||||||| || |||||||| Sbjct 535886 ACGTAAAACTGGCAAAGGGCGTGGCACGGAGGTAGGGCCATGAG 535929 Score = 91.5 bits (100), Expect = 1e-13 Identities = 121/168 (72%), Gaps = 0/168 (0%) Strand=Plus/Plus Query 30223 CATGTCCGTGTACTCTGCTCCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTC 30282 ||| || |||| || || || |||||||||||||| || || || || || || | || Sbjct 539033 CATATCTTTGTATTCGGCCCCAAAATGCCTCCACTGAAAGCCATAAACTGGGCCTAAATC 539092 Query 30283 TCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTC 30342 || ||| | ||| ||| ||| ||||||| ||||||| ||| || ||||| | Sbjct 539093 CCCTTCTGCTCTGGTGGAGAATCCCAGGCTGTCCAAGAAGTCTCGGGACCCATTGGCAGC 539152 Query 30343 CCAGATCTTTACCCCCTTCTCAGAGAGCTCTTTGGAGTTTGTGGACCC 30390 |||||| || || ||||| ||| ||||| || | ||||||||| || Sbjct 539153 CCAGATTTTCACTCCCTTGGAAGACAGCTCCTTAGCGTTTGTGGATCC 539200 >seq26173 Length=4939203 Score = 132 bits (146), Expect = 4e-26 Identities = 335/501 (67%), Gaps = 15/501 (3%) Strand=Plus/Minus Query 29864 AGCTGAGTCTTCAGCGGTTCCACGTTATCCAGGTAGACGTGAGCGTCTCCCAGGTTGTGG 29923 ||||| | |||||| | || || ||||||||| | ||| || ||||||| |||| Sbjct 2187561 AGCTGCATTTTCAGCAGCTCAGTGTGATCCAGGTAAATGTGTGCATCTCCCAAAGTGTGT 2187502 Query 29924 ACAAACTCTCCCGGTTCTAGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAG 29983 ||| | || || || | || || |||| ||| || |||||||| ||||| || | ||| Sbjct 2187501 ACAGAGTCACCTGGCTTCAGGCCTGTGATGTGTGCAATCATGTAGGTGAGCAGGGCATAG 2187442 Query 29984 CTGGCGATGTTAAAGGGTACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACAC 30043 ||||||||||| |||| || || || ||| |||| || ||| ||||||| ||||| || Sbjct 2187441 CTGGCGATGTTGAAGGACACACCCAGGCCCCTGTCTCCTGACTTCTGGTACAGCTG-CAG 2187383 Query 30044 GAGAGCTCTCCGTCGCTCACGTAAAACTGACACATGGCGTGGCACGGAGGAA-------G 30096 || || || || |||||| || || || | ||| |||||| | || | | Sbjct 2187382 GACAG-TCATGGTTCACCACGTAGAAGTGGCAAAGGGCATGGCACAGGGGCAGGGTGGTG 2187324 Query 30097 AGCCATGAGGCCCAAGTCTTTGGGGTTCCAGGCGCACACGATGATGCGCCTGTCTTCTGG 30156 | ||||| | ||||| | ||||| || || | ||||| | |||||||| || Sbjct 2187323 GGGTATGAGAGGAAGATCTTT-CGATTCCAAGCACATAGAATGATTCTTCTGTCTTCAGG 2187265 Query 30157 GTTGTTCCTGATGAGGTCCACGGCGTTTTGCAGCTGATCCACCCCCATCCCCGAGTAGTC 30216 |||| | |||| ||| | | |||||||| || || | || || || || Sbjct 2187264 GTTGGTTTTGATTGTGTCAATCACCTTTTGCAGTTGGTCTGCTCCTTGACCTGAATAAAT 2187205 Query 30217 TGCCCT-CATGTCCGTGTACTCTGCTCCGAAATGCCTCCACTGGAACCCGTACACCGGTC 30275 | | || || |||| || || | ||| |||||||||| || | || || | | Sbjct 2187204 TCAAATCCACATCTTTGTATTCGGCCACCAAAAGCCTCCACTGAAAGCTATAAACTAGGC 2187145 Query 30276 CCAGGTCTCCCTCTTCCCTGTGCTCGA-AG-CCCCTCTTGTCCAAAAAGTCTCTGGAACC 30333 | | || || |||| || || | || || || ||||||| ||||||| ||| | Sbjct 2187144 CTAAATCCCCTTCTT--CTTTGGTGGAGAGTACCAGGCTGTCCAAGAAGTCTCGGGACCT 2187087 Query 30334 GTTGGCGTCCCAGATCTTTAC 30354 || ||| |||||||| || || Sbjct 2187086 GTAGGCATCCCAGATTTTCAC 2187066 >seq27490 Length=5292111 Score = 105 bits (116), Expect = 5e-18 Identities = 182/259 (70%), Gaps = 8/259 (3%) Strand=Plus/Plus Query 110379 ATGAGCTCCAGACGGGGGATCTTTAAGCTCCCTGCTGAGGACTACGTTTATCCTGTCTCT 110438 ||||||||| || || || || || || || ||||| |||| || || ||||| | Sbjct 4483402 ATGAGCTCCCTGTGGAGGTTCCTTGAGTTCTCTACTGAGAACTATATTAATTCTGTCCTT 4483461 Query 110439 CAGAGGTCTATTCTTTTCGGGGATGGAGAACCAAGTCTTTCTACCCATTATCACCACGTT 110498 | ||||| |||||| || || ||||||||||| || || |||||||| |||||| || Sbjct 4483462 TAAAGGTCGATTCTTCTCTGGAATGGAGAACCAGGTTTTCCTACCCATAATCACCGAATT 4483521 Query 110499 CTGCTTGCCTCTGACTGAAGACGTAGCGGTCAAGGCTCGAAAGTGTTTAAAATCTTTGCA 110558 ||| || ||| ||||||| || | ||||| | | || | | | || || | Sbjct 4483522 CTGTTTACCTTCTCCTGAAGAGGTTGTGGTCATTCTTTGGAAATACCTGTATTCGTTCCT 4483581 Query 110559 AAGTCTCGCAGGATGCCACGGCAGATCTCCGTTGTTCCCGATGCCCATG-TCTGGACACG 110617 || || ||| |||| ||||| || ||||| || |||||||||||| ||||| ||| Sbjct 4483582 GAG---CG-AGG--GCCAGGGCAGGTCCCCGTTCTTGCCGATGCCCATGTTCTGG-GACG 4483634 Query 110618 CGGCCACGATACCGTTCAG 110636 | || | ||| | ||| || Sbjct 4483635 CAGCGATGATGCAGTTTAG 4483653 >seq4873 Length=1786275 Score = 95.1 bits (104), Expect = 1e-14 Identities = 112/152 (74%), Gaps = 0/152 (0%) Strand=Plus/Plus Query 110379 ATGAGCTCCAGACGGGGGATCTTTAAGCTCCCTGCTGAGGACTACGTTTATCCTGTCTCT 110438 ||||| ||| || || || || || || || ||||| |||| || || ||||| | Sbjct 1550174 ATGAGGTCCCTGTGGAGGTTCCTTGAGTTCTCTACTGAGAACTATATTAATTCTGTCCTT 1550233 Query 110439 CAGAGGTCTATTCTTTTCGGGGATGGAGAACCAAGTCTTTCTACCCATTATCACCACGTT 110498 | ||||| |||||| || || ||||||||||| ||||| |||||||| ||||||| | Sbjct 1550234 TAAAGGTCGATTCTTCTCTGGAATGGAGAACCAGGTCTTCCTACCCATAATCACCAAATA 1550293 Query 110499 CTGCTTGCCTCTGACTGAAGACGTAGCGGTCA 110530 ||| || ||| ||||||| || | ||||| Sbjct 1550294 CTGTTTACCTTCTCCTGAAGAAGTTGTGGTCA 1550325 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 406158312049596