Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lipotes_20vexillifer_20[refseq_20GCF_5F000442215.1_202013-07-31] 30,713 sequences; 2,429,212,129 total letters Query= NC_028656.1 Length=65955 Score E Sequences producing significant alignments: (Bits) Value seq16569 125 3e-24 seq10953 107 8e-19 >seq16569 Length=1972 Score = 125 bits (138), Expect = 3e-24 Identities = 225/318 (71%), Gaps = 8/318 (3%) Strand=Plus/Plus Query 65108 TCGTTACGGATCTGTGCATGACTCATTAACGCGAAGATAAAGGTGCCGCCGCAGATGTTC 65167 ||| | || | ||| ||||| || || ||||||||||| || |||||||| |||||| Sbjct 270 TCGCTGCGAACCTGCGCATGGCTGATCAACGCGAAGATGAAACTGCCGCCGATGATGTTG 329 Query 65168 CCCGCTAAAGTAGGTAGTGCGAAGGGCCAG-ATGAAATCGCTCCAGTGCAGCGTACCGTT 65226 || || | || || ||||| | |||| |||||| |||| ||| | ||| Sbjct 330 CCGGCCAGGGTCGGCCCGGCGAA-GACCAGCCAGAAATCCTTCCATGGCAACTCGCCGGC 388 Query 65227 AAACACCAGATAGAGGATTTCAACAGAACCGACAACGATGTGAGTGGTGTCACCCAGGGC 65286 ||| ||||| ||| | ||| | |||||||| ||||| || ||| ||||||||| || Sbjct 389 AAATACCAGGTAGGACACTTCGGCTGAACCGACGACGATATGGGTGAAGTCACCCAGAGC 448 Query 65287 AATAAGCCAGGTCATCAATATAATCA-CCACAATCTTTGC-CGCACCCGCTGCAGGAAAC 65344 || | |||| |||| || || | |||| | ||| || | | || | | || | | Sbjct 449 CATGAAGTAGGTGATCAGAATGATGATCCAC-AGCTTGGCACTCTCCATC-GACGGGATC 506 Query 65345 ATCCATACCATAGTGGCGATCAGCCAGCCGGAAATGATCGCGTTGGCAAACATCT-CGCT 65403 ||||| ||||| |||||||||| ||| ||||| | ||| | ||||| ||||||| ||| Sbjct 507 ATCCAGACCATGGTGGCGATCATCCAACCGGAGACGATGCCCTTGGCGAACATCTGCGC- 565 Query 65404 GGGGGTGTTCTTCATCAC 65421 |||| ||||| ||| || Sbjct 566 GGGGTCGTTCTCCATGAC 583 >seq10953 Length=5064 Score = 107 bits (118), Expect = 8e-19 Identities = 363/549 (66%), Gaps = 20/549 (4%) Strand=Plus/Minus Query 65106 TGTCGTTACGGATCTGTGCATGACTCATTAACGCGAAGATAAAGGTGCCGCCGCAGATGT 65165 ||||| | || | ||||||||| || || | | ||||| | |||||||| ||||| Sbjct 1096 TGTCGCTGCGCACCTGTGCATGGCTGATCAGACCAAAGATGAGACTGCCGCCGATGATGT 1037 Query 65166 TCCCCGCTAAAGTAGGTAGTGCGAAGGGCCAGATGAAATCGCTCCAGTGCAGCGT-ACCG 65224 | || || | ||||| || || ||| || | ||| | ||||||| | | | ||| Sbjct 1036 TGCCGGCCAGCGTAGGCAGGGCAAAGTGCAGCAAGAAGTTGCTCCAG-GTTTCTTCACCC 978 Query 65225 TTAAACACCAGATAGAGGATTTCAACAGAACCGACAACGATGTGAGTGGTGTCACCCAGG 65284 | |||||||| || || || || || || |||||||| ||| ||| |||| Sbjct 977 GCCCAGACCAGATACGAGACCTCTACCGACCCCACCACGATGTGGGTGAAGTCGCCCAAT 918 Query 65285 GCAATAAGCCAGGTCATCAATATAATCACCACAATCTTTGCCGCACCCGCTGCAGGAAA- 65343 || || || |||| || | | || | | ||||| || | | | || ||| | Sbjct 917 GCCATGAGGTAGGTGATGACCAGGATGATCCAGATCTTGGC-GTGCTCCATGGAGGGGAT 859 Query 65344 CATCCATACCATAGTGGCGATCAGCCAGCCGGAAATGATCGCGTTGGCAAACATCTCGCT 65403 |||||| ||||| |||||||||| ||||||||| | ||| | ||||||||||||| ||| Sbjct 858 CATCCAGACCATTGTGGCGATCATCCAGCCGGACACGATGCCTTTGGCAAACATCTGGCT 799 Query 65404 GGGGGTGTTCTTCATCACATCCATGCCGATTTTGACAAATGC-ATCGCGAGTTTCTT--C 65460 | | ||| | |||||| | ||| | | | ||| || || | | |||| Sbjct 798 GACGTCGTTTTCCATCACCTTACGGCCCACCTCCAGAAACGCGATATC---TGTCTTGGT 742 Query 65461 ATTGAAGATTGGCATATATTCAA--AT-GCCCACGCC-GCAATACCTGTCCCGAGAATAT 65516 || ||||| |||| ||| | || |||| ||| ||||| || ||| | | Sbjct 741 ATCAAAGATCGGCA---GTTCGAGCATCACCCAGGCCACCAATA-GAGTACCGGCCAGGT 686 Query 65517 TACCCAGCAGCACGACGCCCCATAACCGCA-TAAGTAAGCCAACGTTGCTCATTGTCGGT 65575 | || ||| || |||||||| | |||| ||| | || | ||||| || || || Sbjct 685 TGCCGGCCAGGACCACGCCCCACAGGCGCAGCAAGCGA-CCGAAGTTGCCCAGCGTTGGC 627 Query 65576 TTTTGCATGACGGGTAGTACCGCAGTCACGGTGTTTTCGGTAAATAATTGCTGGCGGGCC 65635 | ||| || || || || || |||| |||||| ||||| || |||||||| || || Sbjct 626 GTCGTCATCACTGGCAGGACAGCGGTCAGGGTGTTCTCGGTGAACAATTGCTGCCGCGCG 567 Query 65636 ATAATGACG 65644 || |||||| Sbjct 566 ATGATGACG 558 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 210852245353788