Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lipotes_20vexillifer_20[refseq_20GCF_5F000442215.1_202013-07-31] 30,713 sequences; 2,429,212,129 total letters Query= NC_028696.2 Length=41338 Score E Sequences producing significant alignments: (Bits) Value seq28753 107 5e-19 >seq28753 Length=697 Score = 107 bits (118), Expect = 5e-19 Identities = 268/396 (68%), Gaps = 16/396 (4%) Strand=Plus/Minus Query 39552 CGGCACCCATTCGTTCTTCAGACTCCTGAAGAAGCGCTCCATTGGGCTGTTATCCCAGCA 39611 ||| | |||||| | |||| || | || | ||||||||| || |||||||||||| Sbjct 508 CGGTATCCATTCTGTTTTCAAGCTGCGAAATACGCGCTCCATCGGTGCGTTATCCCAGCA 449 Query 39612 GTTTCCACGCCGACTCATACTCTGCCTGATCCGGTATCTCCACAGTAACTGCCGGAACTG 39671 |||||| || |||||||| ||||| | || ||||||| ||||| ||| || || | Sbjct 448 GTTTCCTCGTCGACTCATGCTCTGGCGCATGCGGTATCGCCACAACCGCTGGCGAAAGAG 389 Query 39672 CCTGCTCGTATAATGACTGCCTTGATCGCTGTGGAACATCA-CCCCGACGGGCTTACCAC 39730 | ||| | ||| || || || || |||||| | || |||| ||| | |||| Sbjct 388 TCGGCTTGCATATTGCGATCCCTGGTCCGAGTGGAATAGCAGGTCCGA-AGGCCTGCCAC 330 Query 39731 GGGTTTCCCATGCCATTTCCAGTGCTTTCATGGTAAGC-CTGCTGTCCGGCGAGAACGAC 39789 | || | ||||| ||||| |||| || ||| | || ||| ||| |||| Sbjct 329 GCTGCTCGTAAGCCATATCCAGCGCTTAGATCACCAGCTCAGC-GTCTGGCTTTTCCGAC 271 Query 39790 ATGGCCCAGCCCACTGGTTTTCTTGCGAAC--AGGTCGAGAACAACGGCGAGGTACGCCC 39847 | ||||||||||| | | ||| || || || || || || || ||||| || Sbjct 270 AGCGCCCAGCCCAC--GATCCGACGCGTACAAAGATCCAGGACGACAGCCAGGTAATGCC 213 Query 39848 AGCGCTTACC---CGTCCAGATATAGGTCACATCACCGCACCACACCTGATTTGGCTCGG 39904 | ||| || || ||| || | ||| ||| |||||||| || ||||| ||| | | Sbjct 212 A---CTTTCCTTGCGCCCAAATGTGGGTGGTATCGCCGCACCAGACTTGATTGGGCGCTG 156 Query 39905 TCACGGCGAACT-GCCGTTCAAGGTAGTTAGGGATA 39939 |||| |||||| || |||||| || ||| |||||| Sbjct 155 GCACGTCGAACTCGCGGTTCAATGT-GTTCGGGATA 121 Score = 107 bits (118), Expect = 5e-19 Identities = 268/396 (68%), Gaps = 16/396 (4%) Strand=Plus/Minus Query 16927 CGGCACCCATTCGTTCTTCAGACTCCTGAAGAAGCGCTCCATTGGGCTGTTATCCCAGCA 16986 ||| | |||||| | |||| || | || | ||||||||| || |||||||||||| Sbjct 508 CGGTATCCATTCTGTTTTCAAGCTGCGAAATACGCGCTCCATCGGTGCGTTATCCCAGCA 449 Query 16987 GTTTCCACGCCGACTCATACTCTGCCTGATCCGGTATCTCCACAGTAACTGCCGGAACTG 17046 |||||| || |||||||| ||||| | || ||||||| ||||| ||| || || | Sbjct 448 GTTTCCTCGTCGACTCATGCTCTGGCGCATGCGGTATCGCCACAACCGCTGGCGAAAGAG 389 Query 17047 CCTGCTCGTATAATGACTGCCTTGATCGCTGTGGAACATCA-CCCCGACGGGCTTACCAC 17105 | ||| | ||| || || || || |||||| | || |||| ||| | |||| Sbjct 388 TCGGCTTGCATATTGCGATCCCTGGTCCGAGTGGAATAGCAGGTCCGA-AGGCCTGCCAC 330 Query 17106 GGGTTTCCCATGCCATTTCCAGTGCTTTCATGGTAAGC-CTGCTGTCCGGCGAGAACGAC 17164 | || | ||||| ||||| |||| || ||| | || ||| ||| |||| Sbjct 329 GCTGCTCGTAAGCCATATCCAGCGCTTAGATCACCAGCTCAGC-GTCTGGCTTTTCCGAC 271 Query 17165 ATGGCCCAGCCCACTGGTTTTCTTGCGAAC--AGGTCGAGAACAACGGCGAGGTACGCCC 17222 | ||||||||||| | | ||| || || || || || || || ||||| || Sbjct 270 AGCGCCCAGCCCAC--GATCCGACGCGTACAAAGATCCAGGACGACAGCCAGGTAATGCC 213 Query 17223 AGCGCTTACC---CGTCCAGATATAGGTCACATCACCGCACCACACCTGATTTGGCTCGG 17279 | ||| || || ||| || | ||| ||| |||||||| || ||||| ||| | | Sbjct 212 A---CTTTCCTTGCGCCCAAATGTGGGTGGTATCGCCGCACCAGACTTGATTGGGCGCTG 156 Query 17280 TCACGGCGAACT-GCCGTTCAAGGTAGTTAGGGATA 17314 |||| |||||| || |||||| || ||| |||||| Sbjct 155 GCACGTCGAACTCGCGGTTCAATGT-GTTCGGGATA 121 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 132111799017800