Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Lipotes_20vexillifer_20[refseq_20GCF_5F000442215.1_202013-07-31]
30,713 sequences; 2,429,212,129 total letters
Query= NC_028696.2
Length=41338
Score E
Sequences producing significant alignments: (Bits) Value
seq28753 107 5e-19
>seq28753
Length=697
Score = 107 bits (118), Expect = 5e-19
Identities = 268/396 (68%), Gaps = 16/396 (4%)
Strand=Plus/Minus
Query 39552 CGGCACCCATTCGTTCTTCAGACTCCTGAAGAAGCGCTCCATTGGGCTGTTATCCCAGCA 39611
||| | |||||| | |||| || | || | ||||||||| || ||||||||||||
Sbjct 508 CGGTATCCATTCTGTTTTCAAGCTGCGAAATACGCGCTCCATCGGTGCGTTATCCCAGCA 449
Query 39612 GTTTCCACGCCGACTCATACTCTGCCTGATCCGGTATCTCCACAGTAACTGCCGGAACTG 39671
|||||| || |||||||| ||||| | || ||||||| ||||| ||| || || |
Sbjct 448 GTTTCCTCGTCGACTCATGCTCTGGCGCATGCGGTATCGCCACAACCGCTGGCGAAAGAG 389
Query 39672 CCTGCTCGTATAATGACTGCCTTGATCGCTGTGGAACATCA-CCCCGACGGGCTTACCAC 39730
| ||| | ||| || || || || |||||| | || |||| ||| | ||||
Sbjct 388 TCGGCTTGCATATTGCGATCCCTGGTCCGAGTGGAATAGCAGGTCCGA-AGGCCTGCCAC 330
Query 39731 GGGTTTCCCATGCCATTTCCAGTGCTTTCATGGTAAGC-CTGCTGTCCGGCGAGAACGAC 39789
| || | ||||| ||||| |||| || ||| | || ||| ||| ||||
Sbjct 329 GCTGCTCGTAAGCCATATCCAGCGCTTAGATCACCAGCTCAGC-GTCTGGCTTTTCCGAC 271
Query 39790 ATGGCCCAGCCCACTGGTTTTCTTGCGAAC--AGGTCGAGAACAACGGCGAGGTACGCCC 39847
| ||||||||||| | | ||| || || || || || || || ||||| ||
Sbjct 270 AGCGCCCAGCCCAC--GATCCGACGCGTACAAAGATCCAGGACGACAGCCAGGTAATGCC 213
Query 39848 AGCGCTTACC---CGTCCAGATATAGGTCACATCACCGCACCACACCTGATTTGGCTCGG 39904
| ||| || || ||| || | ||| ||| |||||||| || ||||| ||| | |
Sbjct 212 A---CTTTCCTTGCGCCCAAATGTGGGTGGTATCGCCGCACCAGACTTGATTGGGCGCTG 156
Query 39905 TCACGGCGAACT-GCCGTTCAAGGTAGTTAGGGATA 39939
|||| |||||| || |||||| || ||| ||||||
Sbjct 155 GCACGTCGAACTCGCGGTTCAATGT-GTTCGGGATA 121
Score = 107 bits (118), Expect = 5e-19
Identities = 268/396 (68%), Gaps = 16/396 (4%)
Strand=Plus/Minus
Query 16927 CGGCACCCATTCGTTCTTCAGACTCCTGAAGAAGCGCTCCATTGGGCTGTTATCCCAGCA 16986
||| | |||||| | |||| || | || | ||||||||| || ||||||||||||
Sbjct 508 CGGTATCCATTCTGTTTTCAAGCTGCGAAATACGCGCTCCATCGGTGCGTTATCCCAGCA 449
Query 16987 GTTTCCACGCCGACTCATACTCTGCCTGATCCGGTATCTCCACAGTAACTGCCGGAACTG 17046
|||||| || |||||||| ||||| | || ||||||| ||||| ||| || || |
Sbjct 448 GTTTCCTCGTCGACTCATGCTCTGGCGCATGCGGTATCGCCACAACCGCTGGCGAAAGAG 389
Query 17047 CCTGCTCGTATAATGACTGCCTTGATCGCTGTGGAACATCA-CCCCGACGGGCTTACCAC 17105
| ||| | ||| || || || || |||||| | || |||| ||| | ||||
Sbjct 388 TCGGCTTGCATATTGCGATCCCTGGTCCGAGTGGAATAGCAGGTCCGA-AGGCCTGCCAC 330
Query 17106 GGGTTTCCCATGCCATTTCCAGTGCTTTCATGGTAAGC-CTGCTGTCCGGCGAGAACGAC 17164
| || | ||||| ||||| |||| || ||| | || ||| ||| ||||
Sbjct 329 GCTGCTCGTAAGCCATATCCAGCGCTTAGATCACCAGCTCAGC-GTCTGGCTTTTCCGAC 271
Query 17165 ATGGCCCAGCCCACTGGTTTTCTTGCGAAC--AGGTCGAGAACAACGGCGAGGTACGCCC 17222
| ||||||||||| | | ||| || || || || || || || ||||| ||
Sbjct 270 AGCGCCCAGCCCAC--GATCCGACGCGTACAAAGATCCAGGACGACAGCCAGGTAATGCC 213
Query 17223 AGCGCTTACC---CGTCCAGATATAGGTCACATCACCGCACCACACCTGATTTGGCTCGG 17279
| ||| || || ||| || | ||| ||| |||||||| || ||||| ||| | |
Sbjct 212 A---CTTTCCTTGCGCCCAAATGTGGGTGGTATCGCCGCACCAGACTTGATTGGGCGCTG 156
Query 17280 TCACGGCGAACT-GCCGTTCAAGGTAGTTAGGGATA 17314
|||| |||||| || |||||| || ||| ||||||
Sbjct 155 GCACGTCGAACTCGCGGTTCAATGT-GTTCGGGATA 121
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 132111799017800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |