Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lipotes_20vexillifer_20[refseq_20GCF_5F000442215.1_202013-07-31] 30,713 sequences; 2,429,212,129 total letters Query= NC_028827.1 Length=50165 Score E Sequences producing significant alignments: (Bits) Value seq30298 212 2e-50 seq1156 141 3e-29 >seq30298 Length=5331 Score = 212 bits (234), Expect = 2e-50 Identities = 283/388 (73%), Gaps = 14/388 (4%) Strand=Plus/Minus Query 40035 AGGGCTTGTCCAGCACGCGGGCCGCGTCCTTCATCGCG---TTGCGCGCCTTGATCCGGC 40091 ||| |||| | ||||||| ||| |||| || | || ||| |||| || | || Sbjct 2359 AGGACTTGCCTTGCACGCGCGCCACGTCGCGCACCACGGCCTTGGCCGCCATGGT---GC 2303 Query 40092 CGAAGGTCCCGATCTGTGCGAC--CTTGTCGGCCCCGTACTTCTCGGTGACGTACCGGAT 40149 | ||||| |||||| ||| | | || |||||| ||| | ||||| ||| Sbjct 2302 CAAAGGTAATGATCTGGCTGACGGCATTACG--CCCGTAGGCCTCTGCCACGTAGTCGAT 2245 Query 40150 GACCTCGCCGCGACGCCGGTCATC--GAAGTCGATGTCAACGTCGGGCATGGACACGCGC 40207 |||| | | || |||| ||| |||||||| ||| | ||||||||||||||| ||| Sbjct 2244 GACCCGGTCCCG--GCCGTCCATGCAGAAGTCGACGTCGAAGTCGGGCATGGACACCCGC 2187 Query 40208 TCGGGGTTCAGGAACCGCTCGAAGATGAGCCCGTGCTCCAGTGGATCGAGGTCGGTGATC 40267 || ||||||||||| |||||||| | || ||| |||| || ||||||||||||||| Sbjct 2186 TCAGGGTTCAGGAAGCGCTCGAACAGCAGGTCGTAGGCCAGCGGGTCGAGGTCGGTGATC 2127 Query 40268 CCGAGGCAGTAGGCGACCAGCGAACCGGCTGCCGAGCCTCGCCCAGGACCGACCCACACG 40327 ||| |||||| ||||||||||| || |||||||||| ||||| || ||| ||| Sbjct 2126 TTGAGCACGTAGGCCACCAGCGAACCTGCACCCGAGCCTCGGCCAGGCCCCACCGGTACG 2067 Query 40328 CCGTTCTCCTTGGCCCAGCCGATGAAGTCGGCGACGACCAGGAAGTAGGACGGGAAGCCC 40387 ||||| | ||||||||| ||||||||| |||| ||||||||| ||||||||| Sbjct 2066 CCGTTGTTCTTGGCCCACTTGATGAAGTCCATCACGATCAGGAAGTAACCGGGGAAGCCC 2007 Query 40388 ATCTGGATGATCATGTCGATCTCGTACT 40415 ||||||||||| || || | |||| ||| Sbjct 2006 ATCTGGATGATGATATCCAGCTCGAACT 1979 Score = 102 bits (112), Expect = 3e-17 Identities = 115/154 (75%), Gaps = 0/154 (0%) Strand=Plus/Minus Query 39208 CTCCTTGGCCAGAACCTCGGGCTTCTTCTTGCCCATGGCCCGACGCAGCAGGTCGGCCTG 39267 || |||||||| |||||||||||||||||||||| ||||||||||||| |||||| Sbjct 3171 CTGCTTGGCCATTTCCTCGGGCTTCTTCTTGCCCATCGCCCGACGCAGCATGTCGGCGCC 3112 Query 39268 GCCCAGGCTGTAGCCAGCGAGGATCTGCGCCGCCTTCTGCACCTGCTCCTGGTAGATGAT 39327 |||| | |||| || || | | ||| || || | |||||||||||| || | ||| Sbjct 3111 ACCCAAGGTGTACCCCGCCATCACCTGGGCGATCTGCATCACCTGCTCCTGATACAGGAT 3052 Query 39328 GAGCCCGTACGTCGGGTCCAGGATCTCCCGCAGG 39361 || ||||| || || |||| | | | ||||| Sbjct 3051 GATGCCGTAGGTTGGCGCCAGCACCGGCTGCAGG 3018 >seq1156 Length=1237 Score = 141 bits (156), Expect = 3e-29 Identities = 174/238 (73%), Gaps = 0/238 (0%) Strand=Plus/Minus Query 40174 GAAGTCGATGTCAACGTCGGGCATGGACACGCGCTCGGGGTTCAGGAACCGCTCGAAGAT 40233 |||||||| ||| | |||||||||||| || || || |||||||||||||| ||||| | Sbjct 777 GAAGTCGACGTCGAAGTCGGGCATGGAAACCCGTTCCGGGTTCAGGAACCGTTCGAACAG 718 Query 40234 GAGCCCGTGCTCCAGTGGATCGAGGTCGGTGATCCCGAGGCAGTAGGCGACCAGCGAACC 40293 || | | || || || || |||||||||||| | |||||| |||||||| || Sbjct 717 CAGGTCATATTCAAGCGGGTCAAGGTCGGTGATCTTCTGTACGTAGGCCACCAGCGAGCC 658 Query 40294 GGCTGCCGAGCCTCGCCCAGGACCGACCCACACGCCGTTCTCCTTGGCCCAGCCGATGAA 40353 || | || || || ||||| || ||| || ||||| | |||||||| ||| || Sbjct 657 AGCACCTGACCCCCGACCAGGGCCTACCGGTACACCGTTGTTTTTGGCCCACTGGATAAA 598 Query 40354 GTCGGCGACGACCAGGAAGTAGGACGGGAAGCCCATCTGGATGATCATGTCGATCTCG 40411 ||| |||| ||||||||| ||||| ||||||||||| || || || | |||| Sbjct 597 GTCCATTACGATCAGGAAGTAACCGGGGAACCCCATCTGGATAATGATATCCAGCTCG 540 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 160347897079062