Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Lipotes_20vexillifer_20[refseq_20GCF_5F000442215.1_202013-07-31]
30,713 sequences; 2,429,212,129 total letters
Query= NC_028827.1
Length=50165
Score E
Sequences producing significant alignments: (Bits) Value
seq30298 212 2e-50
seq1156 141 3e-29
>seq30298
Length=5331
Score = 212 bits (234), Expect = 2e-50
Identities = 283/388 (73%), Gaps = 14/388 (4%)
Strand=Plus/Minus
Query 40035 AGGGCTTGTCCAGCACGCGGGCCGCGTCCTTCATCGCG---TTGCGCGCCTTGATCCGGC 40091
||| |||| | ||||||| ||| |||| || | || ||| |||| || | ||
Sbjct 2359 AGGACTTGCCTTGCACGCGCGCCACGTCGCGCACCACGGCCTTGGCCGCCATGGT---GC 2303
Query 40092 CGAAGGTCCCGATCTGTGCGAC--CTTGTCGGCCCCGTACTTCTCGGTGACGTACCGGAT 40149
| ||||| |||||| ||| | | || |||||| ||| | ||||| |||
Sbjct 2302 CAAAGGTAATGATCTGGCTGACGGCATTACG--CCCGTAGGCCTCTGCCACGTAGTCGAT 2245
Query 40150 GACCTCGCCGCGACGCCGGTCATC--GAAGTCGATGTCAACGTCGGGCATGGACACGCGC 40207
|||| | | || |||| ||| |||||||| ||| | ||||||||||||||| |||
Sbjct 2244 GACCCGGTCCCG--GCCGTCCATGCAGAAGTCGACGTCGAAGTCGGGCATGGACACCCGC 2187
Query 40208 TCGGGGTTCAGGAACCGCTCGAAGATGAGCCCGTGCTCCAGTGGATCGAGGTCGGTGATC 40267
|| ||||||||||| |||||||| | || ||| |||| || |||||||||||||||
Sbjct 2186 TCAGGGTTCAGGAAGCGCTCGAACAGCAGGTCGTAGGCCAGCGGGTCGAGGTCGGTGATC 2127
Query 40268 CCGAGGCAGTAGGCGACCAGCGAACCGGCTGCCGAGCCTCGCCCAGGACCGACCCACACG 40327
||| |||||| ||||||||||| || |||||||||| ||||| || ||| |||
Sbjct 2126 TTGAGCACGTAGGCCACCAGCGAACCTGCACCCGAGCCTCGGCCAGGCCCCACCGGTACG 2067
Query 40328 CCGTTCTCCTTGGCCCAGCCGATGAAGTCGGCGACGACCAGGAAGTAGGACGGGAAGCCC 40387
||||| | ||||||||| ||||||||| |||| ||||||||| |||||||||
Sbjct 2066 CCGTTGTTCTTGGCCCACTTGATGAAGTCCATCACGATCAGGAAGTAACCGGGGAAGCCC 2007
Query 40388 ATCTGGATGATCATGTCGATCTCGTACT 40415
||||||||||| || || | |||| |||
Sbjct 2006 ATCTGGATGATGATATCCAGCTCGAACT 1979
Score = 102 bits (112), Expect = 3e-17
Identities = 115/154 (75%), Gaps = 0/154 (0%)
Strand=Plus/Minus
Query 39208 CTCCTTGGCCAGAACCTCGGGCTTCTTCTTGCCCATGGCCCGACGCAGCAGGTCGGCCTG 39267
|| |||||||| |||||||||||||||||||||| ||||||||||||| ||||||
Sbjct 3171 CTGCTTGGCCATTTCCTCGGGCTTCTTCTTGCCCATCGCCCGACGCAGCATGTCGGCGCC 3112
Query 39268 GCCCAGGCTGTAGCCAGCGAGGATCTGCGCCGCCTTCTGCACCTGCTCCTGGTAGATGAT 39327
|||| | |||| || || | | ||| || || | |||||||||||| || | |||
Sbjct 3111 ACCCAAGGTGTACCCCGCCATCACCTGGGCGATCTGCATCACCTGCTCCTGATACAGGAT 3052
Query 39328 GAGCCCGTACGTCGGGTCCAGGATCTCCCGCAGG 39361
|| ||||| || || |||| | | | |||||
Sbjct 3051 GATGCCGTAGGTTGGCGCCAGCACCGGCTGCAGG 3018
>seq1156
Length=1237
Score = 141 bits (156), Expect = 3e-29
Identities = 174/238 (73%), Gaps = 0/238 (0%)
Strand=Plus/Minus
Query 40174 GAAGTCGATGTCAACGTCGGGCATGGACACGCGCTCGGGGTTCAGGAACCGCTCGAAGAT 40233
|||||||| ||| | |||||||||||| || || || |||||||||||||| ||||| |
Sbjct 777 GAAGTCGACGTCGAAGTCGGGCATGGAAACCCGTTCCGGGTTCAGGAACCGTTCGAACAG 718
Query 40234 GAGCCCGTGCTCCAGTGGATCGAGGTCGGTGATCCCGAGGCAGTAGGCGACCAGCGAACC 40293
|| | | || || || || |||||||||||| | |||||| |||||||| ||
Sbjct 717 CAGGTCATATTCAAGCGGGTCAAGGTCGGTGATCTTCTGTACGTAGGCCACCAGCGAGCC 658
Query 40294 GGCTGCCGAGCCTCGCCCAGGACCGACCCACACGCCGTTCTCCTTGGCCCAGCCGATGAA 40353
|| | || || || ||||| || ||| || ||||| | |||||||| ||| ||
Sbjct 657 AGCACCTGACCCCCGACCAGGGCCTACCGGTACACCGTTGTTTTTGGCCCACTGGATAAA 598
Query 40354 GTCGGCGACGACCAGGAAGTAGGACGGGAAGCCCATCTGGATGATCATGTCGATCTCG 40411
||| |||| ||||||||| ||||| ||||||||||| || || || | ||||
Sbjct 597 GTCCATTACGATCAGGAAGTAACCGGGGAACCCCATCTGGATAATGATATCCAGCTCG 540
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 160347897079062
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |