Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lipotes_20vexillifer_20[refseq_20GCF_5F000442215.1_202013-07-31] 30,713 sequences; 2,429,212,129 total letters Query= NC_028853.1 Length=50078 Score E Sequences producing significant alignments: (Bits) Value seq26652 491 1e-134 >seq26652 Length=3114 Score = 491 bits (544), Expect = 1e-134 Identities = 850/1217 (70%), Gaps = 30/1217 (2%) Strand=Plus/Minus Query 38598 ATTTGTAGAAGATCAAACCTAATCTGACAGTCCCCCGTTTTAAATTACCGTGTCTGTCAG 38657 ||||||| || |||||||| |||||||||| ||| |||| ||| ||| ||||||| Sbjct 2722 ATTTGTACTAGCTCAAACCTGATCTGACAGTTACCCATTTTTTATT---GTGCCTGTCAG 2666 Query 38658 ATTAA-TTTGAGCTTAAATTCTTTTCCACCCAAATCCGTTTTCCATCAAGTAAGGTTGCC 38716 |||| |||||||| |||||||| || ||||||||||||||||||||||||| ||| | Sbjct 2665 GTTAAATTTGAGCT-AAATTCTTCTCAGCCCAAATCCGTTTTCCATCAAGTAAAGTTTCA 2607 Query 38717 ATCGGTGTTCTGCCACAGCACATTTTTCCTTGATGTGTTCGATGGTGATTATAATACATT 38776 | ||||| | ||||||||||||||||||||||| || || | |||||| | | Sbjct 2606 AGTGGTGTACGACCACAGCACATTTTTCCTTGATGAGTACGTTCAGTATTATAGAATTTC 2547 Query 38777 AACCACTCATCTAAATCCGCTTGTAATGTCGTTAAATCCG-TATAAATTTTCTTCCTAAA 38835 | ||| || |||| ||| |||||||| || | ||| | |||||| ||||||||||| Sbjct 2546 AGCCAATCGTCTAGATCAACTTGTAAT-TCTTCCAATGAGCTATAAAGCTTCTTCCTAAA 2488 Query 38836 TGCCACTTGGTAAAATTCTTGTAAGATTGTTTTATGGAACCGTTCGCAGATACCATTCGT 38895 | | ||| || || || || || || || |||||||| || || ||||||||||| || Sbjct 2487 CGTAATTTGATAGAACTCCTGCAAAATCGTCTTATGGAAACGCTCACAGATACCATTTGT 2428 Query 38896 CTGGGG--ATGCTTCACTTTCGTTTTCGTATGCTCTATGTCATTTATCGCTAAATAAAGC 38953 || || | ||| | ||| || ||||| || || || ||||| | || | ||| | | Sbjct 2427 TTGCGGCGAAGCTGC--TTTTGTCTTCGTGTGATCAATATCATTAACTGCCAGATACAAC 2370 Query 38954 TCATAATCGTGATTTTCTACCTTGCCACAATATTCACTTCCTCGGTCAGTTAATATGCGT 39013 ||||| || || | ||||||||| || ||||| ||| | |||| ||| || | ||||| Sbjct 2369 TCATAGTCATGTTGTTCTACCTTACCGCAATACTCAGTACCTCTGTCTGTGAGGATGCGA 2310 Query 39014 AACATCGGTAAACCTTGGCTTTCAAAGTATGGTAACACTTTATCATTCAGCATATCCGCA 39073 | ||| ||||| | || || | || |||| ||||| |||||| || | ||| || Sbjct 2309 AGCATTGGTAAGTCCTGAGATTGATAGAATGGCAACACACGATCATTGAGTAAATCAGCC 2250 Query 39074 GCACTGATAGCGGTCTTCATTGTATAAAGTTTTGCAA---ACGCCACTTTACTGTAAGTA 39130 || | || | || || ||||||| || || |||| ||| || || || ||||| Sbjct 2249 GCTGTAATCGGTGTTTTTGTTGTATAGAGCTT-GCAATGAACG--ACCTTGCTATAAGTG 2193 Query 39131 TCAATAAACGTTTGTTGATAAATACGACCCACTCCTTTGAGGTTGCCCACATAGAAAGTA 39190 || || || ||||||||||| || || || || |||||||| || || ||||| || || Sbjct 2192 TCGATGAATGTTTGTTGATAGATTCGTCCAACACCTTTGAGATTCCCGACATAAAAGGTG 2133 Query 39191 TCTTGTGAGCCAAGATAGCCAGGGTGTACCGTTTCAATTTCACCACAGGCAATCTCATCT 39250 ||||| | ||| | |||||| || || | ||||| ||||||||||| |||| ||||| Sbjct 2132 TCTTGCGCGCCTAAATAGCCTGGATGAGCTGTTTCGATTTCACCACAAGCAACGTCATCC 2073 Query 39251 TCTTTCTTACGCTCTAAGGCTTGTACCTGTGTTTCACTGAGTATAATACCTTGTTCTGCA 39310 || | |||||| || | || | ||| ||| | | | |||||| | | |||| Sbjct 2072 TCATGCTTACGTTCAAGTGCCGCAATCTGCTGATCATTTAATTCAATACCATCCTGTGCA 2013 Query 39311 ACCAGTTT---TTCCAGGGCGATTAATCTTTGCTTAAAATTGGCAAGATGATGACGTAAC 39367 || ||| || || || |||| | | |||||| || | | || |||||| | | Sbjct 2012 AC---TTTAGCCTCAAGTGCTTTTAAACGCTTCTTAAAGTTTTCTAAATCATGACGAAGC 1956 Query 39368 CAAATCGAACGTACACCTCCTGCTGAAACAAAGATGCCTTGTTTACGGAGTTCCTTACTC 39427 || || || || || || | ||||||| || | || | || || | ||| |||||| Sbjct 1955 CATATAGAGCGAACCCCACTCCCTGAAACGAATACACCCTTCTTGCGTAATTCATTACTC 1896 Query 39428 ACTCTTACCTGTCCAAATGCCGGGTTATCAAGAGCAAACTTCACAACAGCTTGCTCTATT 39487 | ||| ||| |||| || | | || || || | | |||||| || || | Sbjct 1895 GTACGGTGCTGACCATATGCGGGATATTGAATTGCGAAATCAATAACAGCCTGTTCAGTA 1836 Query 39488 GCCTCATCAACACGATTTTTTAAGTTGGGAACGCGTCTATTTTGATTCAGCAATGCTTCA 39547 | ||||| ||||| |||||||| || || || || | | ||| | || ||| ||| Sbjct 1835 GTATCATCTACACGGTTTTTTAAATTTGGTACTCGACGGGACTTATTAATCAGTGCGTCA 1776 Query 39548 ACACCACCTTGCTCAACCGCTTGTTGATAACGATAGAATGTATCTCGGCTCATTCCCATT 39607 | | |||| || || || ||||| ||||| |||||||||| | ||||| Sbjct 1775 ATATCACCAGACTTCACTAATTCCTGATAGCGATAAAATGTATCTCTTGAAACCCCCATC 1716 Query 39608 ACTTTGCAGGCTTGAGAAATATTACCCAGTTCTTCTGCTAAATTTAATAAACCGGTCTTG 39667 |||||||| ||| || | ||| || ||||| |||||||| | | ||| ||| Sbjct 1715 ACTTTGCATGCTCTGGATACATTCTGAAGCTCTTCAGCTAAATTAAGCAGACCTACTTTG 1656 Query 39668 TGTTTAATGAGAGGGTTGTTAGAATAAAACAT--GAGAGTTTCCTTTTTGTTTAGATTGA 39725 |||||||||| | ||||||| || ||||| || |||| || ||||||| |||| | Sbjct 1655 TGTTTAATGATTTGATTGTTAGTATGCAACATAAGAAAGTTACC--TTTGTTT-GATTAA 1599 Query 39726 -TTTTTGACACTCATATTCTAAACGGGAAACTCTCACTTTTTAGAGTGAATTGTCAGATC 39784 ||| ||||| | | || ||| ||| |||| || |||||| || | ||| |||| Sbjct 1598 GATTTCGACAC-CTTTATCAAAATGGGTAACTTTCTCTTTTTCAAGAAGAATGTACGATC 1540 Query 39785 AAGTCTGATCTTCTACA 39801 |||||||| || |||| Sbjct 1539 AAGTCTGAACTAATACA 1523 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 160069598616240