Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Lipotes_20vexillifer_20[refseq_20GCF_5F000442215.1_202013-07-31]
30,713 sequences; 2,429,212,129 total letters
Query= NC_028892.1
Length=49949
Score E
Sequences producing significant alignments: (Bits) Value
seq30298 167 7e-37
seq1156 140 1e-28
>seq30298
Length=5331
Score = 167 bits (184), Expect = 7e-37
Identities = 182/242 (75%), Gaps = 0/242 (0%)
Strand=Plus/Minus
Query 39081 GAAGTCGATGTCCACGTCGGGCATGGAGACACGCTCAGGGTTCAGGAACCGCTCGAAGAT 39140
|||||||| ||| | |||||||||||| || ||||||||||||||||| |||||||| |
Sbjct 2220 GAAGTCGACGTCGAAGTCGGGCATGGACACCCGCTCAGGGTTCAGGAAGCGCTCGAACAG 2161
Query 39141 GAGCCCGTGAGGGATGGGGTCCAGGTCGGTGATCCCGAGGGCGTACGCGGCCAGCGAGCC 39200
|| ||| | | ||||| |||||||||||| ||| |||| || ||||||| ||
Sbjct 2160 CAGGTCGTAGGCCAGCGGGTCGAGGTCGGTGATCTTGAGCACGTAGGCCACCAGCGAACC 2101
Query 39201 AGCCGCAGAGCCGCGCCCAGGGCCGACCCACACGCCGTTCTCCTTCGCCCAGCCGATGAA 39260
|| | ||||| || ||||| || ||| |||||||| | ||| ||||| ||||||
Sbjct 2100 TGCACCCGAGCCTCGGCCAGGCCCCACCGGTACGCCGTTGTTCTTGGCCCACTTGATGAA 2041
Query 39261 GTCGGCGACGACGAGGAAGTACGACGGGAACCCCATCTGGTTGATCATGTCGATCTCGTA 39320
||| |||| |||||||| ||||| ||||||||| |||| || || | |||| |
Sbjct 2040 GTCCATCACGATCAGGAAGTAACCGGGGAAGCCCATCTGGATGATGATATCCAGCTCGAA 1981
Query 39321 CT 39322
||
Sbjct 1980 CT 1979
Score = 102 bits (112), Expect = 3e-17
Identities = 224/332 (67%), Gaps = 4/332 (1%)
Strand=Plus/Minus
Query 37926 CACGGCCGCCATGTACTCGGCCGGGTAGTGCGTCTTCAGGTACGCCGTGCGGTAGGCGAT 37985
||| || |||||| || |||||||| ||| ||||| || | || || |||||| |
Sbjct 3360 CACCGCAGCCATGAACGGGGCCGGGTGGTGGGTCTTGAGCCAGGCTGTCTGGTAGGACAC 3301
Query 37986 GAGTCCGTACGCCGCAGAGTGCGCCTTGTTGAAGGCGTACCCGGCGAAGGGTACGAGCAC 38045
|| || || || || ||||| | |||||||||| |||| || ||||| | | ||
Sbjct 3300 CAGGCCATAGGCGGCCGAGTGAGACTTGTTGAAGCCGTAACCTGCGAACTTCTCTACCAG 3241
Query 38046 GTCCCACACC--GCCCGGATGGCAGCCTCCGAGTAGCCTCGCTCGCTCGCCCCCTTCTGG 38103
||| | | ||||| | | || ||| | | | | || | || ||
Sbjct 3240 GTCGAAGATGTTGCCCGCAAGATCCCCATCGATTC-CATTATTGGCACAGCCATCAATGA 3182
Query 38104 AAGTTCACGAACTCCTTGGCCAGCACCTCGGGCTTCTTCTTGCCCATGGCGCGACGGAGG 38163
|| | || || |||||||| |||||||||||||||||||||| || ||||| ||
Sbjct 3181 AACCGC-CGCGCTGCTTGGCCATTTCCTCGGGCTTCTTCTTGCCCATCGCCCGACGCAGC 3123
Query 38164 AGGTCGGCCTGACCGAGGGTGTACCCGGCCAGGATCTGCGCCGCCTTCTGCACCTGCTCC 38223
| |||||| ||| | ||||||||| |||| | ||| || || | ||||||||||
Sbjct 3122 ATGTCGGCGCCACCCAAGGTGTACCCCGCCATCACCTGGGCGATCTGCATCACCTGCTCC 3063
Query 38224 TGGTAGATGATGAGCCCGAAGGTCGGGTCCAG 38255
|| || | ||||| ||| |||| || ||||
Sbjct 3062 TGATACAGGATGATGCCGTAGGTTGGCGCCAG 3031
>seq1156
Length=1237
Score = 140 bits (154), Expect = 1e-28
Identities = 206/290 (71%), Gaps = 4/290 (1%)
Strand=Plus/Minus
Query 39031 CCGTACTTCTCGGTGACGTACCGGATCACGTCGCCACGGCGACGGTCATC--GAAGTCGA 39088
||||| || |||| |||||| |||||| | |||||| | ||| ||||||||
Sbjct 827 CCGTATTTTTCGGCCACGTACTCAATCACGCGGTCACGGCCATC--CATGCAGAAGTCGA 770
Query 39089 TGTCCACGTCGGGCATGGAGACACGCTCAGGGTTCAGGAACCGCTCGAAGATGAGCCCGT 39148
||| | |||||||||||| || || || |||||||||||||| ||||| | || | |
Sbjct 769 CGTCGAAGTCGGGCATGGAAACCCGTTCCGGGTTCAGGAACCGTTCGAACAGCAGGTCAT 710
Query 39149 GAGGGATGGGGTCCAGGTCGGTGATCCCGAGGGCGTACGCGGCCAGCGAGCCAGCCGCAG 39208
| ||||| |||||||||||| | |||| || ||||||||||||| | |
Sbjct 709 ATTCAAGCGGGTCAAGGTCGGTGATCTTCTGTACGTAGGCCACCAGCGAGCCAGCACCTG 650
Query 39209 AGCCGCGCCCAGGGCCGACCCACACGCCGTTCTCCTTCGCCCAGCCGATGAAGTCGGCGA 39268
| || || |||||||| ||| || ||||| | || ||||| ||| ||||| |
Sbjct 649 ACCCCCGACCAGGGCCTACCGGTACACCGTTGTTTTTGGCCCACTGGATAAAGTCCATTA 590
Query 39269 CGACGAGGAAGTACGACGGGAACCCCATCTGGTTGATCATGTCGATCTCG 39318
||| |||||||| ||||||||||||||| | || || || | ||||
Sbjct 589 CGATCAGGAAGTAACCGGGGAACCCCATCTGGATAATGATATCCAGCTCG 540
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 159656949171366
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |