Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lipotes_20vexillifer_20[refseq_20GCF_5F000442215.1_202013-07-31] 30,713 sequences; 2,429,212,129 total letters Query= NC_028892.1 Length=49949 Score E Sequences producing significant alignments: (Bits) Value seq30298 167 7e-37 seq1156 140 1e-28 >seq30298 Length=5331 Score = 167 bits (184), Expect = 7e-37 Identities = 182/242 (75%), Gaps = 0/242 (0%) Strand=Plus/Minus Query 39081 GAAGTCGATGTCCACGTCGGGCATGGAGACACGCTCAGGGTTCAGGAACCGCTCGAAGAT 39140 |||||||| ||| | |||||||||||| || ||||||||||||||||| |||||||| | Sbjct 2220 GAAGTCGACGTCGAAGTCGGGCATGGACACCCGCTCAGGGTTCAGGAAGCGCTCGAACAG 2161 Query 39141 GAGCCCGTGAGGGATGGGGTCCAGGTCGGTGATCCCGAGGGCGTACGCGGCCAGCGAGCC 39200 || ||| | | ||||| |||||||||||| ||| |||| || ||||||| || Sbjct 2160 CAGGTCGTAGGCCAGCGGGTCGAGGTCGGTGATCTTGAGCACGTAGGCCACCAGCGAACC 2101 Query 39201 AGCCGCAGAGCCGCGCCCAGGGCCGACCCACACGCCGTTCTCCTTCGCCCAGCCGATGAA 39260 || | ||||| || ||||| || ||| |||||||| | ||| ||||| |||||| Sbjct 2100 TGCACCCGAGCCTCGGCCAGGCCCCACCGGTACGCCGTTGTTCTTGGCCCACTTGATGAA 2041 Query 39261 GTCGGCGACGACGAGGAAGTACGACGGGAACCCCATCTGGTTGATCATGTCGATCTCGTA 39320 ||| |||| |||||||| ||||| ||||||||| |||| || || | |||| | Sbjct 2040 GTCCATCACGATCAGGAAGTAACCGGGGAAGCCCATCTGGATGATGATATCCAGCTCGAA 1981 Query 39321 CT 39322 || Sbjct 1980 CT 1979 Score = 102 bits (112), Expect = 3e-17 Identities = 224/332 (67%), Gaps = 4/332 (1%) Strand=Plus/Minus Query 37926 CACGGCCGCCATGTACTCGGCCGGGTAGTGCGTCTTCAGGTACGCCGTGCGGTAGGCGAT 37985 ||| || |||||| || |||||||| ||| ||||| || | || || |||||| | Sbjct 3360 CACCGCAGCCATGAACGGGGCCGGGTGGTGGGTCTTGAGCCAGGCTGTCTGGTAGGACAC 3301 Query 37986 GAGTCCGTACGCCGCAGAGTGCGCCTTGTTGAAGGCGTACCCGGCGAAGGGTACGAGCAC 38045 || || || || || ||||| | |||||||||| |||| || ||||| | | || Sbjct 3300 CAGGCCATAGGCGGCCGAGTGAGACTTGTTGAAGCCGTAACCTGCGAACTTCTCTACCAG 3241 Query 38046 GTCCCACACC--GCCCGGATGGCAGCCTCCGAGTAGCCTCGCTCGCTCGCCCCCTTCTGG 38103 ||| | | ||||| | | || ||| | | | | || | || || Sbjct 3240 GTCGAAGATGTTGCCCGCAAGATCCCCATCGATTC-CATTATTGGCACAGCCATCAATGA 3182 Query 38104 AAGTTCACGAACTCCTTGGCCAGCACCTCGGGCTTCTTCTTGCCCATGGCGCGACGGAGG 38163 || | || || |||||||| |||||||||||||||||||||| || ||||| || Sbjct 3181 AACCGC-CGCGCTGCTTGGCCATTTCCTCGGGCTTCTTCTTGCCCATCGCCCGACGCAGC 3123 Query 38164 AGGTCGGCCTGACCGAGGGTGTACCCGGCCAGGATCTGCGCCGCCTTCTGCACCTGCTCC 38223 | |||||| ||| | ||||||||| |||| | ||| || || | |||||||||| Sbjct 3122 ATGTCGGCGCCACCCAAGGTGTACCCCGCCATCACCTGGGCGATCTGCATCACCTGCTCC 3063 Query 38224 TGGTAGATGATGAGCCCGAAGGTCGGGTCCAG 38255 || || | ||||| ||| |||| || |||| Sbjct 3062 TGATACAGGATGATGCCGTAGGTTGGCGCCAG 3031 >seq1156 Length=1237 Score = 140 bits (154), Expect = 1e-28 Identities = 206/290 (71%), Gaps = 4/290 (1%) Strand=Plus/Minus Query 39031 CCGTACTTCTCGGTGACGTACCGGATCACGTCGCCACGGCGACGGTCATC--GAAGTCGA 39088 ||||| || |||| |||||| |||||| | |||||| | ||| |||||||| Sbjct 827 CCGTATTTTTCGGCCACGTACTCAATCACGCGGTCACGGCCATC--CATGCAGAAGTCGA 770 Query 39089 TGTCCACGTCGGGCATGGAGACACGCTCAGGGTTCAGGAACCGCTCGAAGATGAGCCCGT 39148 ||| | |||||||||||| || || || |||||||||||||| ||||| | || | | Sbjct 769 CGTCGAAGTCGGGCATGGAAACCCGTTCCGGGTTCAGGAACCGTTCGAACAGCAGGTCAT 710 Query 39149 GAGGGATGGGGTCCAGGTCGGTGATCCCGAGGGCGTACGCGGCCAGCGAGCCAGCCGCAG 39208 | ||||| |||||||||||| | |||| || ||||||||||||| | | Sbjct 709 ATTCAAGCGGGTCAAGGTCGGTGATCTTCTGTACGTAGGCCACCAGCGAGCCAGCACCTG 650 Query 39209 AGCCGCGCCCAGGGCCGACCCACACGCCGTTCTCCTTCGCCCAGCCGATGAAGTCGGCGA 39268 | || || |||||||| ||| || ||||| | || ||||| ||| ||||| | Sbjct 649 ACCCCCGACCAGGGCCTACCGGTACACCGTTGTTTTTGGCCCACTGGATAAAGTCCATTA 590 Query 39269 CGACGAGGAAGTACGACGGGAACCCCATCTGGTTGATCATGTCGATCTCG 39318 ||| |||||||| ||||||||||||||| | || || || | |||| Sbjct 589 CGATCAGGAAGTAACCGGGGAACCCCATCTGGATAATGATATCCAGCTCG 540 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 159656949171366