Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lipotes_20vexillifer_20[refseq_20GCF_5F000442215.1_202013-07-31] 30,713 sequences; 2,429,212,129 total letters Query= NC_028898.1 Length=35764 Score E Sequences producing significant alignments: (Bits) Value seq26652 488 1e-133 >seq26652 Length=3114 Score = 488 bits (540), Expect = 1e-133 Identities = 845/1212 (70%), Gaps = 26/1212 (2%) Strand=Plus/Minus Query 24397 TGTAGAAGATCAAACCTAATCTGACAGTCCCCCGTTTTAAATTACCGTGTCTGTCAGATT 24456 |||| || |||||||| |||||||||| ||| |||| ||| ||| ||||||| || Sbjct 2719 TGTACTAGCTCAAACCTGATCTGACAGTTACCCATTTTTTATT---GTGCCTGTCAGGTT 2663 Query 24457 AA-TTTGAGCTTAAATTCTTTTCCACCCAAATCCGTTTTCCATCAAGTAAGGTTGCCATC 24515 || |||||||| |||||||| || ||||||||||||||||||||||||| ||| | | Sbjct 2662 AAATTTGAGCT-AAATTCTTCTCAGCCCAAATCCGTTTTCCATCAAGTAAAGTTTCAAGT 2604 Query 24516 GGTGTTCTGCCACAGCACATTTTTCCTTGATGTGTTCGATGGTGATTATAATACATTAAC 24575 ||||| | ||||||||||||||||||||||| || || | |||||| | | | | Sbjct 2603 GGTGTACGACCACAGCACATTTTTCCTTGATGAGTACGTTCAGTATTATAGAATTTCAGC 2544 Query 24576 CACTCATCTAAATCCGCTTGTAATGTCGTTAAATCCG-TATAAATTTTCTTCCTAAATGC 24634 || || |||| ||| |||||||| || | ||| | |||||| ||||||||||| | Sbjct 2543 CAATCGTCTAGATCAACTTGTAAT-TCTTCCAATGAGCTATAAAGCTTCTTCCTAAACGT 2485 Query 24635 CACTTGGTAAAATTCTTGTAAGATTGTTTTATGGAACCGTTCGCAGATGCCGTTAGTCTG 24694 | ||| || || || || || || || |||||||| || || ||||| || || || || Sbjct 2484 AATTTGATAGAACTCCTGCAAAATCGTCTTATGGAAACGCTCACAGATACCATTTGTTTG 2425 Query 24695 CGGATGTTTTACCTTGGTTTTACTGTGTTCAATATCATTTATTGCTAAATAAAGCTCATA 24754 ||| | | || || || |||| ||||||||||| | ||| | ||| | |||||| Sbjct 2424 CGGCGAAGCTGCTTTTGTCTTCGTGTGATCAATATCATTAACTGCCAGATACAACTCATA 2365 Query 24755 ATCGTGATTTTCTACCTTGCCACAATATTCACTTCCTCGGTCAGTTAATATGCGTAACAT 24814 || || | ||||||||| || ||||| ||| | |||| ||| || | ||||| | ||| Sbjct 2364 GTCATGTTGTTCTACCTTACCGCAATACTCAGTACCTCTGTCTGTGAGGATGCGAAGCAT 2305 Query 24815 CGGTAAACCTTGGCTTTCAAAGTATGGTAACACTTTATCATTCAGCATATCCGCAGCACT 24874 ||||| | || || | || |||| ||||| |||||| || | ||| || || | Sbjct 2304 TGGTAAGTCCTGAGATTGATAGAATGGCAACACACGATCATTGAGTAAATCAGCCGCTGT 2245 Query 24875 GATAGCGGTCTTCATTGTATAAAGTTTTGCAA---ACGCCACTTTACTGTAAGTATCAAT 24931 || | || || ||||||| || || |||| ||| || || || ||||| || || Sbjct 2244 AATCGGTGTTTTTGTTGTATAGAGCTT-GCAATGAACG--ACCTTGCTATAAGTGTCGAT 2188 Query 24932 AAACGTTTGTTGATAAATACGACCCACTCCTTTGAGGTTGCCCACATAGAAAGTATCTTG 24991 || ||||||||||| || || || || |||||||| || || ||||| || || ||||| Sbjct 2187 GAATGTTTGTTGATAGATTCGTCCAACACCTTTGAGATTCCCGACATAAAAGGTGTCTTG 2128 Query 24992 TGAGCCAAGATAGCCAGGGTGTGCCGTTTCAATTTCACCACAGGCAATCTCATCTTCTTT 25051 | ||| | |||||| || || || ||||| ||||||||||| |||| ||||| || | Sbjct 2127 CGCGCCTAAATAGCCTGGATGAGCTGTTTCGATTTCACCACAAGCAACGTCATCCTCATG 2068 Query 25052 CTTACGCTCTAAGGCTTGTACCTGTGTTTCACTGAGTATAATACCTTGTTCTGCAACCAG 25111 |||||| || | || | ||| ||| | | | |||||| | | |||||| Sbjct 2067 CTTACGTTCAAGTGCCGCAATCTGCTGATCATTTAATTCAATACCATCCTGTGCAAC--- 2011 Query 25112 TTT---TTCCAGGGCGATTAATCTTTGCTTAAAATTGGCAAGATGATGACGTAACCAAAT 25168 ||| || || || |||| | | |||||| || | | || |||||| | ||| || Sbjct 2010 TTTAGCCTCAAGTGCTTTTAAACGCTTCTTAAAGTTTTCTAAATCATGACGAAGCCATAT 1951 Query 25169 CGAACGTACACCTCCTGCTGAAACAAAGATGCCTTGTTTACGGAGTTCGTTACTCACTCT 25228 || || || || | ||||||| || | || | || || | ||| |||||| | Sbjct 1950 AGAGCGAACCCCACTCCCTGAAACGAATACACCCTTCTTGCGTAATTCATTACTCGTACG 1891 Query 25229 TACCTGTCCAAATGCCGGGTTATCAAGAGCAAACTTCACAACAGCTTGCTCTATTGCCTC 25288 ||| ||| |||| || | | || || || | | |||||| || || | | || Sbjct 1890 GTGCTGACCATATGCGGGATATTGAATTGCGAAATCAATAACAGCCTGTTCAGTAGTATC 1831 Query 25289 ATCAACACGATTTTTTAAGTTGGGAACGCGTCTATTTTGATTCAGCAATGCTTCAACACC 25348 ||| ||||| |||||||| || || || || | | ||| | || ||| |||| | | Sbjct 1830 ATCTACACGGTTTTTTAAATTTGGTACTCGACGGGACTTATTAATCAGTGCGTCAATATC 1771 Query 25349 ACCTTGCTCAACCGCTTGTTGATAACGATAGAATGTATCTCGGCTCATTCCCATTACTTT 25408 ||| || || || ||||| ||||| |||||||||| | ||||| ||||| Sbjct 1770 ACCAGACTTCACTAATTCCTGATAGCGATAAAATGTATCTCTTGAAACCCCCATCACTTT 1711 Query 25409 GCAGGCTTGAGAAATATTACCCAGTTCTTCTGCTAAATTTAATAAACCGGTCTTGTGTTT 25468 ||| ||| || | ||| || ||||| |||||||| | | ||| |||||||| Sbjct 1710 GCATGCTCTGGATACATTCTGAAGCTCTTCAGCTAAATTAAGCAGACCTACTTTGTGTTT 1651 Query 25469 AATGAGAGGGTTGTTAGAATAAAACAT--GAGAGTTTCCTTTTTGTTTAGATTGA-TTTT 25525 ||||| | ||||||| || ||||| || |||| || ||||||| |||| | ||| Sbjct 1650 AATGATTTGATTGTTAGTATGCAACATAAGAAAGTTACC--TTTGTTT-GATTAAGATTT 1594 Query 25526 TGACACTCATATTCTAAACGGGAAACTCTCACTTTTTAGAGTGAATTGTCAGATCAAGTC 25585 ||||| | | || ||| ||| |||| || |||||| || | ||| ||||||||| Sbjct 1593 CGACAC-CTTTATCAAAATGGGTAACTTTCTCTTTTTCAAGAAGAATGTACGATCAAGTC 1535 Query 25586 TGATCTTCTACA 25597 ||| || |||| Sbjct 1534 TGAACTAATACA 1523 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 114281504399756