Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Lipotes_20vexillifer_20[refseq_20GCF_5F000442215.1_202013-07-31]
30,713 sequences; 2,429,212,129 total letters
Query= NC_028956.1
Length=52139
Score E
Sequences producing significant alignments: (Bits) Value
seq26652 491 1e-134
>seq26652
Length=3114
Score = 491 bits (544), Expect = 1e-134
Identities = 850/1217 (70%), Gaps = 30/1217 (2%)
Strand=Plus/Minus
Query 40661 ATTTGTAGAAGATCAAACCTAATCTGACAGTCCCCCGTTTTAAATTACCGTGTCTGTCAG 40720
||||||| || |||||||| |||||||||| ||| |||| ||| ||| |||||||
Sbjct 2722 ATTTGTACTAGCTCAAACCTGATCTGACAGTTACCCATTTTTTATT---GTGCCTGTCAG 2666
Query 40721 ATTAA-TTTGAGCTTAAATTCTTTTCCACCCAAATCCGTTTTCCATCAAGTAAGGTTGCC 40779
|||| |||||||| |||||||| || ||||||||||||||||||||||||| ||| |
Sbjct 2665 GTTAAATTTGAGCT-AAATTCTTCTCAGCCCAAATCCGTTTTCCATCAAGTAAAGTTTCA 2607
Query 40780 ATCGGTGTTCTGCCACAGCACATTTTTCCTTGATGTGTTCGATGGTGATTATAATACATT 40839
| ||||| | ||||||||||||||||||||||| || || | |||||| | |
Sbjct 2606 AGTGGTGTACGACCACAGCACATTTTTCCTTGATGAGTACGTTCAGTATTATAGAATTTC 2547
Query 40840 AACCACTCATCTAAATCCGCTTGTAATGTCGTTAAATCCG-TATAAATTTTCTTCCTAAA 40898
| ||| || |||| ||| |||||||| || | ||| | |||||| |||||||||||
Sbjct 2546 AGCCAATCGTCTAGATCAACTTGTAAT-TCTTCCAATGAGCTATAAAGCTTCTTCCTAAA 2488
Query 40899 TGCCACTTGGTAAAATTCTTGTAAGATTGTTTTATGGAACCGTTCGCAGATACCATTCGT 40958
| | ||| || || || || || || || |||||||| || || ||||||||||| ||
Sbjct 2487 CGTAATTTGATAGAACTCCTGCAAAATCGTCTTATGGAAACGCTCACAGATACCATTTGT 2428
Query 40959 CTGGGG--ATGCTTCACTTTCGTTTTCGTATGCTCTATGTCATTTATCGCTAAATAAAGC 41016
|| || | ||| | ||| || ||||| || || || ||||| | || | ||| | |
Sbjct 2427 TTGCGGCGAAGCTGC--TTTTGTCTTCGTGTGATCAATATCATTAACTGCCAGATACAAC 2370
Query 41017 TCATAATCGTGATTTTCTACCTTGCCACAATATTCACTTCCTCGGTCAGTTAATATGCGT 41076
||||| || || | ||||||||| || ||||| ||| | |||| ||| || | |||||
Sbjct 2369 TCATAGTCATGTTGTTCTACCTTACCGCAATACTCAGTACCTCTGTCTGTGAGGATGCGA 2310
Query 41077 AACATCGGTAAACCTTGGCTTTCAAAGTATGGTAACACTTTATCATTCAGCATATCCGCA 41136
| ||| ||||| | || || | || |||| ||||| |||||| || | ||| ||
Sbjct 2309 AGCATTGGTAAGTCCTGAGATTGATAGAATGGCAACACACGATCATTGAGTAAATCAGCC 2250
Query 41137 GCACTGATAGCGGTCTTCATTGTATAAAGTTTTGCAA---ACGCCACTTTACTGTAAGTA 41193
|| | || | || || ||||||| || || |||| ||| || || || |||||
Sbjct 2249 GCTGTAATCGGTGTTTTTGTTGTATAGAGCTT-GCAATGAACG--ACCTTGCTATAAGTG 2193
Query 41194 TCAATAAACGTTTGTTGATAAATACGACCCACTCCTTTGAGGTTGCCCACATAGAAAGTA 41253
|| || || ||||||||||| || || || || |||||||| || || ||||| || ||
Sbjct 2192 TCGATGAATGTTTGTTGATAGATTCGTCCAACACCTTTGAGATTCCCGACATAAAAGGTG 2133
Query 41254 TCTTGTGAGCCAAGATAGCCAGGGTGTACCGTTTCAATTTCACCACAGGCAATCTCATCT 41313
||||| | ||| | |||||| || || | ||||| ||||||||||| |||| |||||
Sbjct 2132 TCTTGCGCGCCTAAATAGCCTGGATGAGCTGTTTCGATTTCACCACAAGCAACGTCATCC 2073
Query 41314 TCTTTCTTACGCTCTAAGGCTTGTACCTGTGTTTCACTGAGTATAATACCTTGTTCTGCA 41373
|| | |||||| || | || | ||| ||| | | | |||||| | | ||||
Sbjct 2072 TCATGCTTACGTTCAAGTGCCGCAATCTGCTGATCATTTAATTCAATACCATCCTGTGCA 2013
Query 41374 ACCAGTTT---TTCCAGGGCGATTAATCTTTGCTTAAAATTGGCAAGATGATGACGTAAC 41430
|| ||| || || || |||| | | |||||| || | | || |||||| | |
Sbjct 2012 AC---TTTAGCCTCAAGTGCTTTTAAACGCTTCTTAAAGTTTTCTAAATCATGACGAAGC 1956
Query 41431 CAAATCGAACGTACACCTCCTGCTGAAACAAAGATGCCTTGTTTACGGAGTTCGTTACTC 41490
|| || || || || || | ||||||| || | || | || || | ||| ||||||
Sbjct 1955 CATATAGAGCGAACCCCACTCCCTGAAACGAATACACCCTTCTTGCGTAATTCATTACTC 1896
Query 41491 ACTCTTACCTGTCCAAATGCCGGGTTATCAAGAGCAAACTTCACAACAGCTTGCTCTATT 41550
| ||| ||| |||| || | | || || || | | |||||| || || |
Sbjct 1895 GTACGGTGCTGACCATATGCGGGATATTGAATTGCGAAATCAATAACAGCCTGTTCAGTA 1836
Query 41551 GCCTCATCAACACGATTTTTTAAGTTGGGAACGCGTCTATTTTGATTCAGCAATGCTTCA 41610
| ||||| ||||| |||||||| || || || || | | ||| | || ||| |||
Sbjct 1835 GTATCATCTACACGGTTTTTTAAATTTGGTACTCGACGGGACTTATTAATCAGTGCGTCA 1776
Query 41611 ACACCACCTTGCTCAACCGCTTGTTGATAACGATAGAATGTATCTCGGCTCATTCCCATT 41670
| | |||| || || || ||||| ||||| |||||||||| | |||||
Sbjct 1775 ATATCACCAGACTTCACTAATTCCTGATAGCGATAAAATGTATCTCTTGAAACCCCCATC 1716
Query 41671 ACTTTGCAGGCTTGAGAAATATTACCCAGTTCTTCTGCTAAATTTAATAAACCGGTCTTG 41730
|||||||| ||| || | ||| || ||||| |||||||| | | ||| |||
Sbjct 1715 ACTTTGCATGCTCTGGATACATTCTGAAGCTCTTCAGCTAAATTAAGCAGACCTACTTTG 1656
Query 41731 TGTTTAATGAGAGGGTTGTTAGAATAAAACAT--GAGAGTTTCCTTTTTGTTTAGATTGA 41788
|||||||||| | ||||||| || ||||| || |||| || ||||||| |||| |
Sbjct 1655 TGTTTAATGATTTGATTGTTAGTATGCAACATAAGAAAGTTACC--TTTGTTT-GATTAA 1599
Query 41789 -TTTTTGACACTCATATTCTAAACGGGAAACTCTCACTTTTTAGAGTGAATTGTCAGATC 41847
||| ||||| | | || ||| ||| |||| || |||||| || | ||| ||||
Sbjct 1598 GATTTCGACAC-CTTTATCAAAATGGGTAACTTTCTCTTTTTCAAGAAGAATGTACGATC 1540
Query 41848 AAGTCTGATCTTCTACA 41864
|||||||| || ||||
Sbjct 1539 AAGTCTGAACTAATACA 1523
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 166662393235506
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |