Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lipotes_20vexillifer_20[refseq_20GCF_5F000442215.1_202013-07-31] 30,713 sequences; 2,429,212,129 total letters Query= NC_028976.1 Length=50113 Score E Sequences producing significant alignments: (Bits) Value seq30298 159 1e-34 seq1156 143 9e-30 >seq30298 Length=5331 Score = 159 bits (176), Expect = 1e-34 Identities = 178/238 (75%), Gaps = 0/238 (0%) Strand=Plus/Minus Query 39514 GAAGTCGATGTCCACGTCGGGCATGGAGACGCGCTCAGGGTTCAGGAACCGCTCGAAGAT 39573 |||||||| ||| | |||||||||||| || ||||||||||||||||| |||||||| | Sbjct 2220 GAAGTCGACGTCGAAGTCGGGCATGGACACCCGCTCAGGGTTCAGGAAGCGCTCGAACAG 2161 Query 39574 GAGCCCGTGAGGGATGGGGTCCAGGTCGGTGATCCCGAGGGCGTACGCGGCCAGCGAGCC 39633 || ||| | | ||||| |||||||||||| ||| |||| || ||||||| || Sbjct 2160 CAGGTCGTAGGCCAGCGGGTCGAGGTCGGTGATCTTGAGCACGTAGGCCACCAGCGAACC 2101 Query 39634 AGCCGCAGAGCCACGCCCAGGGCCGACCCACACACCGTTCTCCTTCGCCCAGCCGATGAA 39693 || | ||||| || ||||| || ||| || ||||| | ||| ||||| |||||| Sbjct 2100 TGCACCCGAGCCTCGGCCAGGCCCCACCGGTACGCCGTTGTTCTTGGCCCACTTGATGAA 2041 Query 39694 GTCGGCGACGACGAGGAAGTACGACGGGAACCCCATCTGGTTGATCATGTCGATCTCG 39751 ||| |||| |||||||| ||||| ||||||||| |||| || || | |||| Sbjct 2040 GTCCATCACGATCAGGAAGTAACCGGGGAAGCCCATCTGGATGATGATATCCAGCTCG 1983 Score = 105 bits (116), Expect = 2e-18 Identities = 285/424 (67%), Gaps = 19/424 (4%) Strand=Plus/Minus Query 38548 CTCCTTGGCCAGCACCTCGGGCTTCTTCTTGCCCATGGCGCGACGGAGAAGGTCGGCCTG 38607 || |||||||| |||||||||||||||||||||| || ||||| || | |||||| Sbjct 3171 CTGCTTGGCCATTTCCTCGGGCTTCTTCTTGCCCATCGCCCGACGCAGCATGTCGGCGCC 3112 Query 38608 ACCGAGGGTGTACCCGGCCAGGATCTGCGCCGCCTTCTGCACCTGCTCCTGGTAGATGAT 38667 ||| | ||||||||| |||| | ||| || || | |||||||||||| || | ||| Sbjct 3111 ACCCAAGGTGTACCCCGCCATCACCTGGGCGATCTGCATCACCTGCTCCTGATACAGGAT 3052 Query 38668 GAGCCCGAAGGTCGGGTCCAGGATCTCGGC--CAG--CGGC-TCCTCCACCTCGGG--GT 38720 || ||| |||| || |||| | |||| ||| || | | || || || | Sbjct 3051 GATGCCGTAGGTTGGCGCCAGCA--CCGGCTGCAGGCCGTCGTACTGATAGTCCGGATGC 2994 Query 38721 GGATCGGCGTGATCTCCTGCTGCCCGTTCTTGCGGAGGGCGTAGTTCGTGTGCGA-GCCC 38779 || | ||| | ||| | |||| ||||||| | | || |||| | | |||| Sbjct 2993 GGGTAGGC--CAGCTCGGCACGTCCGTGCTTGCGGTTGATGAAG-TCGTCCACCATGCCC 2937 Query 38780 ATGCCCATCGGACCCGGACGGTACAGCGCCACGACGGCGGAGATGTCCTCGAACTGGTCC 38839 || ||| || || ||| |||||||||| | |||| || || |||| ||| Sbjct 2936 GACTGCAGCGGGCCGGGGCGGAACAGCGCCACCAAGGCGATGAGATCTTCGAGGCAGTCG 2877 Query 38840 GGCTTCAGCAGGCGGAGCAGGGAGCGCATCGCGCCGC-CG--TCGAGCTGGAACACCGAG 38896 ||||| ||| || ||| ||| ||||| || |||||||||||||||| Sbjct 2876 GGCTTGAGCTTCTTGATCAGCTCTTTCAT---GCCGCGCGATTCGAGCTGGAACACCGCT 2820 Query 38897 AGCGTGTCGCCCCTGGCCAGCAGCTCGTACGTCGCGGGGTCATCCAGCGGGATGTTCTCG 38956 || ||| || | || ||||||||| ||| | ||||||| ||||||||| ||| Sbjct 2819 GTGGTTTCGGCCTTCTGCAACAGCTCGTAGGTCTTGCGGTCATCGAGCGGGATGAAGTCG 2760 Query 38957 ATGT 38960 |||| Sbjct 2759 ATGT 2756 >seq1156 Length=1237 Score = 143 bits (158), Expect = 9e-30 Identities = 207/290 (71%), Gaps = 4/290 (1%) Strand=Plus/Minus Query 39464 CCGTACTTCTCGGTGACGTACCGGATCACGTCGCCACGGCGACGGTCATC--GAAGTCGA 39521 ||||| || |||| |||||| |||||| | |||||| | ||| |||||||| Sbjct 827 CCGTATTTTTCGGCCACGTACTCAATCACGCGGTCACGGCCATC--CATGCAGAAGTCGA 770 Query 39522 TGTCCACGTCGGGCATGGAGACGCGCTCAGGGTTCAGGAACCGCTCGAAGATGAGCCCGT 39581 ||| | |||||||||||| || || || |||||||||||||| ||||| | || | | Sbjct 769 CGTCGAAGTCGGGCATGGAAACCCGTTCCGGGTTCAGGAACCGTTCGAACAGCAGGTCAT 710 Query 39582 GAGGGATGGGGTCCAGGTCGGTGATCCCGAGGGCGTACGCGGCCAGCGAGCCAGCCGCAG 39641 | ||||| |||||||||||| | |||| || ||||||||||||| | | Sbjct 709 ATTCAAGCGGGTCAAGGTCGGTGATCTTCTGTACGTAGGCCACCAGCGAGCCAGCACCTG 650 Query 39642 AGCCACGCCCAGGGCCGACCCACACACCGTTCTCCTTCGCCCAGCCGATGAAGTCGGCGA 39701 | || || |||||||| ||| |||||||| | || ||||| ||| ||||| | Sbjct 649 ACCCCCGACCAGGGCCTACCGGTACACCGTTGTTTTTGGCCCACTGGATAAAGTCCATTA 590 Query 39702 CGACGAGGAAGTACGACGGGAACCCCATCTGGTTGATCATGTCGATCTCG 39751 ||| |||||||| ||||||||||||||| | || || || | |||| Sbjct 589 CGATCAGGAAGTAACCGGGGAACCCCATCTGGATAATGATATCCAGCTCG 540 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 160181557767950