Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Lipotes_20vexillifer_20[refseq_20GCF_5F000442215.1_202013-07-31]
30,713 sequences; 2,429,212,129 total letters
Query= NC_028976.1
Length=50113
Score E
Sequences producing significant alignments: (Bits) Value
seq30298 159 1e-34
seq1156 143 9e-30
>seq30298
Length=5331
Score = 159 bits (176), Expect = 1e-34
Identities = 178/238 (75%), Gaps = 0/238 (0%)
Strand=Plus/Minus
Query 39514 GAAGTCGATGTCCACGTCGGGCATGGAGACGCGCTCAGGGTTCAGGAACCGCTCGAAGAT 39573
|||||||| ||| | |||||||||||| || ||||||||||||||||| |||||||| |
Sbjct 2220 GAAGTCGACGTCGAAGTCGGGCATGGACACCCGCTCAGGGTTCAGGAAGCGCTCGAACAG 2161
Query 39574 GAGCCCGTGAGGGATGGGGTCCAGGTCGGTGATCCCGAGGGCGTACGCGGCCAGCGAGCC 39633
|| ||| | | ||||| |||||||||||| ||| |||| || ||||||| ||
Sbjct 2160 CAGGTCGTAGGCCAGCGGGTCGAGGTCGGTGATCTTGAGCACGTAGGCCACCAGCGAACC 2101
Query 39634 AGCCGCAGAGCCACGCCCAGGGCCGACCCACACACCGTTCTCCTTCGCCCAGCCGATGAA 39693
|| | ||||| || ||||| || ||| || ||||| | ||| ||||| ||||||
Sbjct 2100 TGCACCCGAGCCTCGGCCAGGCCCCACCGGTACGCCGTTGTTCTTGGCCCACTTGATGAA 2041
Query 39694 GTCGGCGACGACGAGGAAGTACGACGGGAACCCCATCTGGTTGATCATGTCGATCTCG 39751
||| |||| |||||||| ||||| ||||||||| |||| || || | ||||
Sbjct 2040 GTCCATCACGATCAGGAAGTAACCGGGGAAGCCCATCTGGATGATGATATCCAGCTCG 1983
Score = 105 bits (116), Expect = 2e-18
Identities = 285/424 (67%), Gaps = 19/424 (4%)
Strand=Plus/Minus
Query 38548 CTCCTTGGCCAGCACCTCGGGCTTCTTCTTGCCCATGGCGCGACGGAGAAGGTCGGCCTG 38607
|| |||||||| |||||||||||||||||||||| || ||||| || | ||||||
Sbjct 3171 CTGCTTGGCCATTTCCTCGGGCTTCTTCTTGCCCATCGCCCGACGCAGCATGTCGGCGCC 3112
Query 38608 ACCGAGGGTGTACCCGGCCAGGATCTGCGCCGCCTTCTGCACCTGCTCCTGGTAGATGAT 38667
||| | ||||||||| |||| | ||| || || | |||||||||||| || | |||
Sbjct 3111 ACCCAAGGTGTACCCCGCCATCACCTGGGCGATCTGCATCACCTGCTCCTGATACAGGAT 3052
Query 38668 GAGCCCGAAGGTCGGGTCCAGGATCTCGGC--CAG--CGGC-TCCTCCACCTCGGG--GT 38720
|| ||| |||| || |||| | |||| ||| || | | || || || |
Sbjct 3051 GATGCCGTAGGTTGGCGCCAGCA--CCGGCTGCAGGCCGTCGTACTGATAGTCCGGATGC 2994
Query 38721 GGATCGGCGTGATCTCCTGCTGCCCGTTCTTGCGGAGGGCGTAGTTCGTGTGCGA-GCCC 38779
|| | ||| | ||| | |||| ||||||| | | || |||| | | ||||
Sbjct 2993 GGGTAGGC--CAGCTCGGCACGTCCGTGCTTGCGGTTGATGAAG-TCGTCCACCATGCCC 2937
Query 38780 ATGCCCATCGGACCCGGACGGTACAGCGCCACGACGGCGGAGATGTCCTCGAACTGGTCC 38839
|| ||| || || ||| |||||||||| | |||| || || |||| |||
Sbjct 2936 GACTGCAGCGGGCCGGGGCGGAACAGCGCCACCAAGGCGATGAGATCTTCGAGGCAGTCG 2877
Query 38840 GGCTTCAGCAGGCGGAGCAGGGAGCGCATCGCGCCGC-CG--TCGAGCTGGAACACCGAG 38896
||||| ||| || ||| ||| ||||| || ||||||||||||||||
Sbjct 2876 GGCTTGAGCTTCTTGATCAGCTCTTTCAT---GCCGCGCGATTCGAGCTGGAACACCGCT 2820
Query 38897 AGCGTGTCGCCCCTGGCCAGCAGCTCGTACGTCGCGGGGTCATCCAGCGGGATGTTCTCG 38956
|| ||| || | || ||||||||| ||| | ||||||| ||||||||| |||
Sbjct 2819 GTGGTTTCGGCCTTCTGCAACAGCTCGTAGGTCTTGCGGTCATCGAGCGGGATGAAGTCG 2760
Query 38957 ATGT 38960
||||
Sbjct 2759 ATGT 2756
>seq1156
Length=1237
Score = 143 bits (158), Expect = 9e-30
Identities = 207/290 (71%), Gaps = 4/290 (1%)
Strand=Plus/Minus
Query 39464 CCGTACTTCTCGGTGACGTACCGGATCACGTCGCCACGGCGACGGTCATC--GAAGTCGA 39521
||||| || |||| |||||| |||||| | |||||| | ||| ||||||||
Sbjct 827 CCGTATTTTTCGGCCACGTACTCAATCACGCGGTCACGGCCATC--CATGCAGAAGTCGA 770
Query 39522 TGTCCACGTCGGGCATGGAGACGCGCTCAGGGTTCAGGAACCGCTCGAAGATGAGCCCGT 39581
||| | |||||||||||| || || || |||||||||||||| ||||| | || | |
Sbjct 769 CGTCGAAGTCGGGCATGGAAACCCGTTCCGGGTTCAGGAACCGTTCGAACAGCAGGTCAT 710
Query 39582 GAGGGATGGGGTCCAGGTCGGTGATCCCGAGGGCGTACGCGGCCAGCGAGCCAGCCGCAG 39641
| ||||| |||||||||||| | |||| || ||||||||||||| | |
Sbjct 709 ATTCAAGCGGGTCAAGGTCGGTGATCTTCTGTACGTAGGCCACCAGCGAGCCAGCACCTG 650
Query 39642 AGCCACGCCCAGGGCCGACCCACACACCGTTCTCCTTCGCCCAGCCGATGAAGTCGGCGA 39701
| || || |||||||| ||| |||||||| | || ||||| ||| ||||| |
Sbjct 649 ACCCCCGACCAGGGCCTACCGGTACACCGTTGTTTTTGGCCCACTGGATAAAGTCCATTA 590
Query 39702 CGACGAGGAAGTACGACGGGAACCCCATCTGGTTGATCATGTCGATCTCG 39751
||| |||||||| ||||||||||||||| | || || || | ||||
Sbjct 589 CGATCAGGAAGTAACCGGGGAACCCCATCTGGATAATGATATCCAGCTCG 540
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 160181557767950
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |