Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lipotes_20vexillifer_20[refseq_20GCF_5F000442215.1_202013-07-31] 30,713 sequences; 2,429,212,129 total letters Query= NC_029079.1 Length=75339 Score E Sequences producing significant alignments: (Bits) Value seq1734 320 8e-83 seq8977 293 1e-74 >seq1734 Length=3873 Score = 320 bits (354), Expect = 8e-83 Identities = 565/816 (69%), Gaps = 17/816 (2%) Strand=Plus/Plus Query 66089 CATTCCCACCGGCTCTATCGCTCTGGACGGCGCTCTGGGCATCGGGGGGTACCCGAGGGG 66148 |||| ||||||||||| | | |||||| ||| ||||| ||||| || || | || Sbjct 373 CATTTCCACCGGCTCTCTGGGGCTGGACATCGCGCTGGGTATCGGCGGTCTGCCAAAAGG 432 Query 66149 CCGGGTGGTGGAAATCTACGGCCCAGAATCTTCAGGGAAGTCAACTCTGTGTCTCCACGC 66208 ||| | || |||||||||||||| ||||| ||||| || | || || ||| | Sbjct 433 CCGTATCGTCGAAATCTACGGCCCGGAATCGTCAGGTAAAACCACGCTCACGCTCTCGGT 492 Query 66209 GGTGGCCAATGCCCAGAAGGCCGGTGGCAACGCTGCCTACATCGACGCTGAGCACTCCCT 66268 | ||| | |||||||| || | || | ||| | | |||| || ||||| | || Sbjct 493 CATCGCCGAAGCCCAGAAAAGTGGCGCCACCTGTGCGTTCGTCGATGCCGAGCATGCTCT 552 Query 66269 GGACCCTGAGTACGCCAAGGCG--CTCGGTGTGGACCTCGACAACCTCGTGGTGGTTCAG 66326 || || |||||||| ||| || || || || | ||| |||| |||| ||| Sbjct 553 TGATCCGGAGTACGCT--GGCAAACTGGGCGTCAACGTAGACGACCTGCTGGTTTCGCAG 610 Query 66327 CCGGACACTGGCGAGCAGGCCCTGGAGATCGTTGACCTCCTCGTCAAGTCTGGCGA-GCT 66385 || ||||| || |||||||| ||||| || ||| | | || ||| | | || Sbjct 611 CCTGACACGGGTGAGCAGGCGCTGGAAATTACCGACATGTTGGTACGGTC---CAATGCG 667 Query 66386 GTCCA--TCGTCGTCGTTGACTCTGTGGCGGCCCTGGTGCCGCGCGCCGAGCTCGAAGGC 66443 ||| | || || |||| ||||| |||||||| ||||| || || || |||||||| Sbjct 668 GTCGACGTCATCATCGTCGACTCCGTGGCGGCGCTGGTACCCAAGGCTGAAATCGAAGGC 727 Query 66444 GACATCGGGGACAGTCACGTCGGCCTGCACGCGCGCCTCATGTCGCAGGCCATGCGCAAG 66503 || || || |||| ||||| ||| |||| || || || ||||| ||||| |||||||| Sbjct 728 GAAATGGGTGACATGCACGTGGGCTTGCAGGCTCGTCTGATGTCCCAGGCGCTGCGCAAG 787 Query 66504 CTCACCGGCACCATCTCCAGCACCAACACGCTGACGCTCTGGGTCAACCAGTTGCGCGAG 66563 ||||||| | |||| | | ||||| ||| ||| |||||||| | || | Sbjct 788 ATCACCGGTAACATCAAGAACGCCAACTGCCTGGTTATCTTCATCAACCAGATCCGTATG 847 Query 66564 AAGATCGGCA--ACGTGGGCTACGGCCCGAACGAGACCACCACGGGCGGCAAGGCTTTGA 66621 ||||||||| | || | || ||||| || |||||||| |||||||| || ||| Sbjct 848 AAGATCGGCGTGATGTTCGGTA--GCCCG---GAAACCACCACCGGCGGCAACGCACTGA 902 Query 66622 GGTTCTACGCCTCAGTCCGCATGGATGTCCGTCGCATCGCCACCGAGAAGGAAGGCGATG 66681 |||||| ||||| || ||| |||| |||| |||| || | | ||||||||||| | Sbjct 903 AGTTCTATGCCTCGGTTCGCCTGGACATCCGCCGCACCGGTGCAGTCAAGGAAGGCGACG 962 Query 66682 AGGCTGTCGGCAACCGCACCCGGGTGAAGGTCGTCAAGAACAAGCTGGCCCCGCCGCACC 66741 ||| || || | ||||| || ||| |||||||||||||| |||| || ||| || Sbjct 963 AGGTGGTGGGTAGTGAAACCCGCGTCAAGATCGTCAAGAACAAGGTGGCGCCACCGTTCC 1022 Query 66742 GCAATGCCGAGTTCTCCGTCGTGTACGGGGAGGGCATCTCGCGTGAGGTCGAACTCCTCG 66801 | | || || ||| | ||||||| |||| |||| ||| | | ||| || ||| Sbjct 1023 GTCAAGCGGAATTCCAGATTCTGTACGGCAAGGGTATCTACCGTAACGGTGAAATCATCG 1082 Query 66802 ACCTGGCCGTGTCGCAGGGCCTGGTGAAGAAGTCGGGCGCCTGGTTCAAGTACGGGGACA 66861 | |||| |||||| ||||||||||| |||| ||||||||||||| || ||| | || Sbjct 1083 ATCTGGGCGTGTCTCAGGGCCTGGTCGAGAAATCGGGCGCCTGGTACAGCTACCAAGGCA 1142 Query 66862 AGAACGTCGCCCAGGGCAAGCCCAAGGCCGTCCAGT 66897 | || ||| ||||||||| | || || | | ||| Sbjct 1143 ACAAGATCGGTCAGGGCAAGGCGAATGCTGCCAAGT 1178 >seq8977 Length=2429 Score = 293 bits (324), Expect = 1e-74 Identities = 569/836 (68%), Gaps = 13/836 (2%) Strand=Plus/Minus Query 66090 ATTCCCACCGGCTCTATCGCTCTGGACGGCGCTCTGGGCATCGGGGGGTACCCGAGGGGC 66149 ||| |||| |||||| | | ||||||| ||| || ||||| || || || | ||| Sbjct 2110 ATTTCCACTGGCTCTCTGGGTCTGGACATCGCGCTCGGCATTGGCGGCCTGCCAAAAGGC 2051 Query 66150 CGGGTGGTGGAAATCTACGGCCCAGAATCTTCAGGGAAGTCAACTCTGTGTCTCCACGCG 66209 || | || ||||||||||| || |||||||| || || | || ||| || | | Sbjct 2050 CGTATCGTTGAAATCTACGGTCCTGAATCTTCCGGTAAAACCACCCTGACCCTGTCGGTG 1991 Query 66210 GTGGCCAATGCCCAGAAGGCCGGTGGCAACGCTGCCTACATCGACGCTGAGCACTCCCTG 66269 | ||| | || ||||| || | || | ||| | | ||||||| |||||| ||||| Sbjct 1990 ATTGCCCAGGCGCAGAAAATGGGCGCCACCTGTGCGTTCGTCGACGCCGAGCACGCCCTG 1931 Query 66270 GACCCTGAGTACGCCAAGGC--GCTCGGTGTGGACCTCGACAACCTCGTGGTGGTTCAGC 66327 || ||||| |||||| ||| ||| || || || | || |||| |||| |||| Sbjct 1930 GATCCTGAATACGCC--GGCAAGCTGGGCGTCAACGTTGATGACCTGCTGGTTTCCCAGC 1873 Query 66328 CGGACACTGGCGAGCAGGCCCTGGAGATCGTTGACCTCCTCGTCAAGTCTGGCGAGCTGT 66387 ||||||| |||||||| |||||||| ||| ||| | || || || || | Sbjct 1872 CGGACACCGGCGAGCAAGCCCTGGAAATCACCGACATGCTGGTGCGCTCCAACGCCATCG 1813 Query 66388 CCATCGTCGTCGTTGACTCTGTGGCGGCCCTGGTGCCGCGCGCCGAGCTCGAAGGCGACA 66447 | | |||| || ||||| ||||| |||||||| || || || |||||||||| | Sbjct 1812 ACGTGATCGTGGTCGACTCCGTGGCTGCCCTGGTACCCAAGGCTGAAATCGAAGGCGAAA 1753 Query 66448 TCGGGGACAGTCACGTCGGCCTGCACGCGCGCCTCATGTCGCAGGCCATGCGCAAGCTCA 66507 | || |||| ||||| |||||||| || ||||| ||||| ||||| |||| || ||| Sbjct 1752 TGGGCGACATGCACGTGGGCCTGCAAGCCCGCCTGATGTCCCAGGCGCTGCGTAAAATCA 1693 Query 66508 CCGGCACCATCTCCAGCACCAACACGCTGACGCTCTGGGTCAACCAGTTGCGCGAGAAGA 66567 |||| | |||| | | ||||| ||| | ||| |||||||| | || ||||| Sbjct 1692 CCGGTAACATCAAGAACGCCAACTGCCTGGTGATCTTCATCAACCAGATCCGTATGAAGA 1633 Query 66568 TCGGCAACGTGGGCTACGGCCCGAACGAGACCACCACGGGCGGCAAGGCTTTGAGGTTCT 66627 ||||| || | | ||||| || |||||||| || || || || ||| ||||| Sbjct 1632 TCGGCGTGATGTTCGGCAGCCCG---GAAACCACCACCGGTGGTAACGCGCTGAAGTTCT 1576 Query 66628 ACGCCTCAGTCCGCATGGATGTCCGTCGCATCGCCACCGAGAAGGAAGGCGATGAGGCTG 66687 |||| || ||||| ||||| |||| || | | | | | ||||||||| || |||| || Sbjct 1575 ACGCTTCGGTCCGTCTGGATATCCGCCGTACTGGCGCGGTGAAGGAAGGTGACGAGGTTG 1516 Query 66688 TCGGCAACCGCACCCGGGTGAAGGTCGTCAAGAACAAGCTGGCCCCGCCGCACCGCAATG 66747 | || | | ||||| || |||||||| |||||||| | |||||||| ||| | | Sbjct 1515 TTGGTAGCGAAACCCGCGTCAAGGTCGTGAAGAACAAAGTTGCCCCGCCATTCCGTCAGG 1456 Query 66748 CCGAGTTCTCCGTCGTGTACGGGGAGGGCATCTCGCGTGAGGTCGAACTCCTCGACCTGG 66807 | |||||| | | ||||| |||| |||| | | | ||| | ||||||||| Sbjct 1455 CTGAGTTCCAGATTCTCTACGGCAAGGGTATCTACCTGAACGGCGAGATGATCGACCTGG 1396 Query 66808 CCGTGTCGCAGGGCCTGGTGAAGAAGTCGGGCGCCTGGT---TCAAGTACGGGGACAAGA 66864 ||| ||| || | || ||||||| || ||||||| | | |||| ||||| Sbjct 1395 GCGTACTGCACGGTTTCGTCGAGAAGTCCGGTGCCTGGTATGCCTACAACGGCAGCAAGA 1336 Query 66865 ACGTCGCCCAGGGCAAGCCCAAGGCCGTCCAGTGGCTCAAGGCCAACCCGGACATC 66920 ||| ||||||||| |||| | | | ||| || || |||||||| ||| Sbjct 1335 ---TCGGTCAGGGCAAGGCCAACTCGGCCAAGTTCCTGGCGGATAACCCGGATATC 1283 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 240869805132900