Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lipotes_20vexillifer_20[refseq_20GCF_5F000442215.1_202013-07-31] 30,713 sequences; 2,429,212,129 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq11056 100 2e-16 seq14731 93.3 3e-14 seq2328 93.3 3e-14 seq14188 91.5 1e-13 seq4839 89.7 3e-13 seq29157 86.0 4e-12 seq20241 86.0 4e-12 seq11297 86.0 4e-12 seq451 86.0 4e-12 seq10790 84.2 1e-11 >seq11056 Length=1110308 Score = 100 bits (110), Expect = 2e-16 Identities = 142/200 (71%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 || |||||||||||||| || ||||| ||||| || || ||||||||||| || | || Sbjct 356647 AATATGCAGATTTTCGTGAAGACCCTGACGGGGAAGACCATCACTCTCGAGGTCAAACCC 356706 Query 23668 ACGGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGAT 23727 |||| || | |||| ||| || || ||||| ||||| | || || || Sbjct 356707 TCGGATACAATAGAAAATGTAATGGCCAAGATCCAGGACAAGGAAGGAATTCCTCCTGAC 356766 Query 23728 CAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTAC 23787 || || | | || ||||| ||||| |||| |||||| | ||| ||| | || ||| Sbjct 356767 CAGCAAAGACTGATCTTTGCTGGCAAGCAACGGGAAGATGGACGTACTCTGTCTGACTAC 356826 Query 23788 AACATACAAAAAGAGTCCAC 23807 ||||| ||||| |||||||| Sbjct 356827 AACATTCAAAAGGAGTCCAC 356846 >seq14731 Length=2762340 Score = 93.3 bits (102), Expect = 3e-14 Identities = 156/226 (69%), Gaps = 0/226 (0%) Strand=Plus/Minus Query 23612 TGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACGG 23671 ||||||||||||| || ||||| ||||| || || ||||||||||| || || || ||| Sbjct 1525654 TGCAGATTTTCGTGAAGACCCTGACGGGGAAGACCATCACTCTCGAGGTCGAACCCTCGG 1525595 Query 23672 ACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAAC 23731 | | |||| |||| || | ||||| ||||| | | || || || | Sbjct 1525594 ATGTAATAGAAAATGTAAAGGCCAAGGTACAGGACAAGGAAGGAATTTCCCCTGACCAGC 1525535 Query 23732 AGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAACA 23791 | | | || ||||| |||| ||||||||||| | ||| ||||| || |||||| Sbjct 1525534 AAAGACTGATCTTTGCATGCAAGCAACTGGAAGATGGACGTACTTTGTCTGACCACAACA 1525475 Query 23792 TACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGG 23837 ||||| ||||||||| | ||| | || || ||| | || || || Sbjct 1525474 CTCAAAAGGAGTCCACACTTCATCTTGTGTTGAGGCTTCGTGGTGG 1525429 >seq2328 Length=1860655 Score = 93.3 bits (102), Expect = 3e-14 Identities = 152/218 (70%), Gaps = 1/218 (0%) Strand=Plus/Minus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 || |||||||||||||| || ||||| ||||| || || ||||||||||| || || || Sbjct 1240238 AATATGCAGATTTTCGTGAAGACCCTGACGGGGAAGACCATCACTCTCGAGGTCGAACCC 1240179 Query 23668 ACGGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGAT 23727 | || || |||| |||| || || ||||| |||| | || || || Sbjct 1240178 TCAGATACAACAGAAAACGTAAAGGCCAAGATCCAGGACAAGGAAGTAATTCCTCCTGAC 1240119 Query 23728 CAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTAC 23787 || || | | || ||||| ||||| || |||||||| | ||| ||||| || ||| Sbjct 1240118 CAGCA-AGACTGATCTTTGCTGGCAAGCACCTGGAAGATGGACGTACTTTGTCTGACTAC 1240060 Query 23788 AACATACAAAAAGAGTCCACATTACATTTAGTTTTAAG 23825 |||| ||||| |||||||| | ||| | || || || Sbjct 1240059 AACACTCAAAAGGAGTCCACTCTTCATCTTGTGTTGAG 1240022 >seq14188 Length=5250308 Score = 91.5 bits (100), Expect = 1e-13 Identities = 139/198 (70%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 || |||||||||||||| || ||||| ||||| || || ||||||||||| || || || Sbjct 4004303 AATATGCAGATTTTCGTGAAGACCCTGACGGGGAAGACCATCACTCTCGAGGTCGAACCC 4004244 Query 23668 ACGGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGAT 23727 |||| || | |||| | || || || ||||| ||||| | || || || Sbjct 4004243 TCGGATACAATAGAAAACGTGAAGGCCAAGATCCAGGACAAGGAAGGAATTCCTCCTGAC 4004184 Query 23728 CAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTAC 23787 || || | | || ||||| ||||| |||||||||| | ||| ||| | || || Sbjct 4004183 CAGCAAAGACTGATCTTTGCTGGCAAGTAACTGGAAGATGGACGTACTCTGTCTGACCAC 4004124 Query 23788 AACATACAAAAAGAGTCC 23805 |||| ||||| |||||| Sbjct 4004123 AACACTCAAAAGGAGTCC 4004106 >seq4839 Length=4080137 Score = 89.7 bits (98), Expect = 3e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| || ||||| || || || || ||||| || || || || ||| Sbjct 528962 ATGCAGATCTTCGTGAAGACCCTGACCGGTAAGACCATCACCCTGGAGGTGGAGCCCAGT 529021 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| | || | | || || || ||||| || || | || || || || Sbjct 529022 GACACCATCGAGAACGTGAAGGCCAAGATCCAGGACAAGGAGGGCATCCCCCCTGACCAG 529081 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 ||| | || || ||||| |||||||| |||||||| | |||||| | ||||||||| Sbjct 529082 CAGAGGTTGATCTTTGCGGGCAAACAGCTGGAAGATGGCCGCACTCTTTCTGATTACAAC 529141 Query 23791 ATACAAAAAGAGTCCAC 23807 || || |||||||| || Sbjct 529142 ATCCAGAAAGAGTCGAC 529158 Score = 89.7 bits (98), Expect = 3e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| || ||||| || || || || ||||| || || || || ||| Sbjct 529418 ATGCAGATCTTCGTGAAGACCCTGACCGGTAAGACCATCACCCTGGAGGTGGAGCCCAGT 529477 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| | || | | || || || ||||| || || | || || || || Sbjct 529478 GACACCATCGAGAACGTGAAGGCCAAGATCCAGGACAAGGAGGGCATCCCCCCTGACCAG 529537 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 ||| | || || ||||| |||||||| |||||||| | |||||| | ||||||||| Sbjct 529538 CAGAGGTTGATCTTTGCGGGCAAACAGCTGGAAGATGGCCGCACTCTTTCTGATTACAAC 529597 Query 23791 ATACAAAAAGAGTCCAC 23807 || || |||||||| || Sbjct 529598 ATCCAGAAAGAGTCGAC 529614 Score = 86.0 bits (94), Expect = 4e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| || ||||| || || || || ||||| || || || || ||| Sbjct 528734 ATGCAGATCTTCGTGAAGACCCTGACCGGTAAGACCATCACCCTGGAGGTGGAGCCCAGT 528793 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| | || | | || || || ||||| || || | || || || || Sbjct 528794 GACACCATCGAGAACGTGAAGGCCAAGATCCAGGACAAGGAGGGCATCCCCCCTGACCAG 528853 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 ||| | | || |||||||| ||||| |||||||| | |||||| | ||||||||| Sbjct 528854 CAGAGGCTGATTTTTGCCGGGAAACAGCTGGAAGATGGCCGCACTCTTTCTGATTACAAC 528913 Query 23791 ATACAAAAAGAGTCCAC 23807 || || |||||||| || Sbjct 528914 ATCCAGAAAGAGTCGAC 528930 Score = 86.0 bits (94), Expect = 4e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| || ||||| || || || || ||||| || || || || ||| Sbjct 529190 ATGCAGATCTTCGTGAAGACCCTGACCGGTAAGACCATCACCCTGGAGGTGGAGCCCAGT 529249 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| | || | | || || || ||||| || || | || || || || Sbjct 529250 GACACCATCGAGAACGTGAAGGCCAAGATCCAGGACAAGGAGGGCATCCCCCCTGACCAG 529309 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 ||| | | || |||||||| ||||| |||||||| | |||||| | ||||||||| Sbjct 529310 CAGAGGCTCATCTTTGCCGGGAAACAGCTGGAAGATGGCCGCACTCTTTCTGATTACAAC 529369 Query 23791 ATACAAAAAGAGTCCAC 23807 || || |||||||| || Sbjct 529370 ATCCAGAAAGAGTCGAC 529386 >seq29157 Length=6873498 Score = 86.0 bits (94), Expect = 4e-12 Identities = 139/200 (70%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 || |||||||||||| | || ||||| || || || || ||||||||| | ||||| | Sbjct 2566607 AAGATGCAGATTTTCATGAAGACCCTGACAGGGAAGACCATCACTCTCAAGGTTGAACCT 2566548 Query 23668 ACGGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGAT 23727 | || || | |||| |||| || || || |||||||| | || || || Sbjct 2566547 TCAGATACAATAGAAAATGTAAAGGCCAAGATCCAAGATAAAGAAGGAATCCCTCCTGAC 2566488 Query 23728 CAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTAC 23787 || || | | || ||||| ||||| |||||||| || | | ||||| || ||| Sbjct 2566487 CAGCAAAGACTGATCTTTGCTGGCAAGCAACTGGAGGATGGCCATACTTTGTCTGACTAC 2566428 Query 23788 AACATACAAAAAGAGTCCAC 23807 ||||| ||||| |||||||| Sbjct 2566427 AACATTCAAAAGGAGTCCAC 2566408 >seq20241 Length=2711202 Score = 86.0 bits (94), Expect = 4e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| || ||||| || || || || ||||| || || || || ||| Sbjct 1753354 ATGCAGATCTTCGTGAAGACCCTGACCGGCAAGACCATCACCCTGGAGGTGGAGCCCAGT 1753295 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| | || | | || || || || || ||||| | || || || || Sbjct 1753294 GACACCATCGAGAACGTGAAGGCCAAGATCCAGGATAAGGAAGGCATCCCCCCTGACCAG 1753235 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 ||| | | || ||||| |||||||| |||||||| | |||||| | ||||||||| Sbjct 1753234 CAGAGGCTCATCTTTGCAGGCAAACAGCTGGAAGATGGCCGCACTCTCTCTGATTACAAC 1753175 Query 23791 ATACAAAAAGAGTCCAC 23807 || || |||||||| || Sbjct 1753174 ATCCAGAAAGAGTCGAC 1753158 Score = 86.0 bits (94), Expect = 4e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| || ||||| || || || || ||||| || || || || ||| Sbjct 1753582 ATGCAGATCTTCGTGAAGACCCTGACCGGCAAGACCATCACCCTGGAGGTGGAGCCCAGT 1753523 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| | || | | || || || || || ||||| | || || || || Sbjct 1753522 GACACCATCGAGAACGTGAAGGCCAAGATCCAGGATAAGGAAGGCATCCCCCCTGACCAG 1753463 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 ||| | | || ||||| |||||||| |||||||| | |||||| | ||||||||| Sbjct 1753462 CAGAGGCTCATCTTTGCAGGCAAACAGCTGGAAGATGGCCGCACTCTCTCTGATTACAAC 1753403 Query 23791 ATACAAAAAGAGTCCAC 23807 || || |||||||| || Sbjct 1753402 ATCCAGAAAGAGTCGAC 1753386 Score = 86.0 bits (94), Expect = 4e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| || ||||| || || || || ||||| || || || || ||| Sbjct 1753810 ATGCAGATCTTCGTGAAGACCCTGACCGGCAAGACCATCACCCTGGAGGTGGAGCCCAGT 1753751 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| | || | | || || || || || ||||| | || || || || Sbjct 1753750 GACACCATCGAGAACGTGAAGGCCAAGATCCAGGATAAGGAAGGCATCCCCCCTGACCAG 1753691 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 ||| | | || ||||| |||||||| |||||||| | |||||| | ||||||||| Sbjct 1753690 CAGAGGCTCATCTTTGCAGGCAAACAGCTGGAAGATGGCCGCACTCTCTCTGATTACAAC 1753631 Query 23791 ATACAAAAAGAGTCCAC 23807 || || |||||||| || Sbjct 1753630 ATCCAGAAAGAGTCGAC 1753614 >seq11297 Length=1864957 Score = 86.0 bits (94), Expect = 4e-12 Identities = 148/214 (69%), Gaps = 1/214 (0%) Strand=Plus/Minus Query 23612 TGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACGG 23671 ||| ||||||| | || ||||| || |||| | | ||||||||||| || || || || Sbjct 1109855 TGCGGATTTTCATGAAGACCCTGACAGGAAGACC-ATCACTCTCGAGGTCGAACCCTTGG 1109797 Query 23672 ACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAAC 23731 | || | |||| |||| || || ||||| ||||| | | || || || | Sbjct 1109796 ATACAATAGAAAATGTAAAGGCTAAGATCCAGGACAAGGAAGGAATTTCCCCTGACCAGC 1109737 Query 23732 AGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAACA 23791 | | | || ||||| ||||| ||||||||||| | ||| ||||| || ||| ||| Sbjct 1109736 AAAGACTGATCTTTGCTGGCAAGCAACTGGAAGATGGACGTACTTTGTTTGACTACCACA 1109677 Query 23792 TACAAAAAGAGTCCACATTACATTTAGTTTTAAG 23825 | ||||| |||||||| | ||| | || || || Sbjct 1109676 TTCAAAAGGAGTCCACCCTTCATATCGTGTTGAG 1109643 >seq451 Length=5792110 Score = 86.0 bits (94), Expect = 4e-12 Identities = 148/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||||||||| || ||||| ||||| || || |||||||||| || || || || Sbjct 1082767 ATGCAGATTTTCGTGAAGACCCTGACGGGGAAGACCGTCACTCTCGAGGTCGAACCCTCG 1082826 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 || | | |||| |||| || || ||||| ||||| | || || || || Sbjct 1082827 GATATGATAGAAAACGTAAAGGCCAAGATCCAGGACAAGGAAGGAATTCCTCCTGACCAG 1082886 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 || | || ||||| ||||| |||| |||||| | ||| ||| | || ||||| Sbjct 1082887 CAAAGACCGATCTTTGCTGGCAAGCAACGGGAAGATGGACGTACTCTGTCTGACCACAAC 1082946 Query 23791 ATACAAAAAGAGTCCACATTACATTTAGTTTTAAG 23825 | ||||| |||||||| | ||| | || || || Sbjct 1082947 ACTCAAAAGGAGTCCACCCTTCATCTTGTGTTGAG 1082981 >seq10790 Length=2053270 Score = 84.2 bits (92), Expect = 1e-11 Identities = 139/198 (70%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| |||| || ||||| ||||| || || ||||| || || || || ||| Sbjct 1303135 ATGCAGATCTTCGGGAAGACCCTGACGGGCAAGACCATCACCCTGGAGGTGGAGCCCAGT 1303194 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| | | ||| | || | || | | || |||||||| | || || || || Sbjct 1303195 GACACCATCAAGAATGTGAAGGCCAAGA-TCCAGGATAAAGAAGGCATCCCCCCTGACCA 1303253 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||| | | | ||||| |||||||| |||||||||| ||||| | |||||||| Sbjct 1303254 GCAGAGGCTCACGTTTGCAGGCAAACAGCTGGAAGACGGCTGCACTATTTCTGATTACAA 1303313 Query 23790 CATACAAAAAGAGTCCAC 23807 ||| || |||||||| || Sbjct 1303314 CATCCAGAAAGAGTCTAC 1303331 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 337883078042204