Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lipotes_20vexillifer_20[refseq_20GCF_5F000442215.1_202013-07-31] 30,713 sequences; 2,429,212,129 total letters Query= NC_030394.2 Length=126965 Score E Sequences producing significant alignments: (Bits) Value seq17408 176 4e-39 seq26173 156 3e-33 seq27490 96.9 3e-15 seq4873 89.7 4e-13 >seq17408 Length=748846 Score = 176 bits (194), Expect = 4e-39 Identities = 138/165 (84%), Gaps = 0/165 (0%) Strand=Plus/Plus Query 29714 AGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGC 29773 || || |||| ||| || |||||||| ||||| || | ||||||||||||||| |||||| Sbjct 535766 AGGCCCGTGATGTGTGCGATCATGTAGGTGAGCAGGGCGTAGCTGGCGATGTTGAAGGGC 535825 Query 29774 ACCCCGAGCCCCATGTCCCCTGACCTCTGGTAGAGCTGGCACGAGAGCTCTCCGTCGCTC 29833 || || || |||||||| |||||||||||||| |||||||| || ||||| |||| | Sbjct 535826 ACACCCAGGCCCATGTCTCCTGACCTCTGGTACAGCTGGCAGGACAGCTCACCGTTCACC 535885 Query 29834 ACGTAAAACTGACACATGGCATGGCACGGAGGAAGGGCCATGAGA 29878 ||||||||||| || | ||| ||||||||||| |||||||||||| Sbjct 535886 ACGTAAAACTGGCAAAGGGCGTGGCACGGAGGTAGGGCCATGAGA 535930 >seq26173 Length=4939203 Score = 156 bits (172), Expect = 3e-33 Identities = 240/339 (71%), Gaps = 10/339 (3%) Strand=Plus/Minus Query 29636 AGCTGAATCCTCAGCGGTTCCACGTGGTCAAGGTAGACGTGAGCATCTCCCAGGGTGTGG 29695 ||||| || ||||| | || ||| || ||||| | ||| |||||||||| ||||| Sbjct 2187561 AGCTGCATTTTCAGCAGCTCAGTGTGATCCAGGTAAATGTGTGCATCTCCCAAAGTGTGT 2187502 Query 29696 ACAAACTCTCCCGGTTCTAGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAG 29755 ||| | || || || | || || |||| ||| || |||||||| ||||| || | ||| Sbjct 2187501 ACAGAGTCACCTGGCTTCAGGCCTGTGATGTGTGCAATCATGTAGGTGAGCAGGGCATAG 2187442 Query 29756 CTGGCGATGTTAAAGGGCACCCCGAGCCCCATGTCCCCTGACCTCTGGTAGAGCTGGCAC 29815 ||||||||||| |||| ||| || || ||| |||| |||||| ||||||| |||| ||| Sbjct 2187441 CTGGCGATGTTGAAGGACACACCCAGGCCCCTGTCTCCTGACTTCTGGTACAGCT-GCAG 2187383 Query 29816 GAGAGCTCTCCGTCGCTCACGTAAAACTGACACATGGCATGGCACGGAGGAA-------G 29868 || || || || |||||| || || || | |||||||||| | || | | Sbjct 2187382 GACAG-TCATGGTTCACCACGTAGAAGTGGCAAAGGGCATGGCACAGGGGCAGGGTGGTG 2187324 Query 29869 GGCCATGAGACCCAAGTCTTTGGGGTTCCAGGCACACACGATGATGCGCCTGTCTTCTGG 29928 || |||||| | ||||| | ||||| ||||| | ||||| | |||||||| || Sbjct 2187323 GGGTATGAGAGGAAGATCTTT-CGATTCCAAGCACATAGAATGATTCTTCTGTCTTCAGG 2187265 Query 29929 GTTGTTCCTGATGAGGTCCACGGCGTTTTGCAGCTGATC 29967 |||| | |||| ||| | | |||||||| || || Sbjct 2187264 GTTGGTTTTGATTGTGTCAATCACCTTTTGCAGTTGGTC 2187226 >seq27490 Length=5292111 Score = 96.9 bits (106), Expect = 3e-15 Identities = 178/259 (69%), Gaps = 8/259 (3%) Strand=Plus/Plus Query 114262 ATGAGCTCCAGACGGGGGATCTTTAAGCTCCCTGCTGAGGACTACGTTTAGCCTGTCTCT 114321 ||||||||| || || || || || || || ||||| |||| || | ||||| | Sbjct 4483402 ATGAGCTCCCTGTGGAGGTTCCTTGAGTTCTCTACTGAGAACTATATTAATTCTGTCCTT 4483461 Query 114322 CAGAGGTCTATTCTTTTCGGGGATGGAGAACCAAGTCTTTCTACCCATTATCACCACGTT 114381 | ||||| |||||| || || ||||||||||| || || |||||||| |||||| || Sbjct 4483462 TAAAGGTCGATTCTTCTCTGGAATGGAGAACCAGGTTTTCCTACCCATAATCACCGAATT 4483521 Query 114382 CTGCTTACCTCTGTCGGAAGACGTAGCGGTCAAGGCTCGAAAGTGTTTAAAATCTTTGCA 114441 ||| |||||| | ||||| || | ||||| | | || | | | || || Sbjct 4483522 CTGTTTACCTTCTCCTGAAGAGGTTGTGGTCATTCTTTGGAAATACCTGTATTCGTT--- 4483578 Query 114442 AAGTCTCACCGGATGCCACGGCAGATCTCCGTTGTTCCCGATGCCCATG-TCTGGACACG 114500 || | || |||| ||||| || ||||| || |||||||||||| ||||| ||| Sbjct 4483579 ---CCTGAGCGAGGGCCAGGGCAGGTCCCCGTTCTTGCCGATGCCCATGTTCTGG-GACG 4483634 Query 114501 CTGCCACGATACCGTTCAG 114519 | || | ||| | ||| || Sbjct 4483635 CAGCGATGATGCAGTTTAG 4483653 >seq4873 Length=1786275 Score = 89.7 bits (98), Expect = 4e-13 Identities = 111/152 (73%), Gaps = 0/152 (0%) Strand=Plus/Plus Query 114262 ATGAGCTCCAGACGGGGGATCTTTAAGCTCCCTGCTGAGGACTACGTTTAGCCTGTCTCT 114321 ||||| ||| || || || || || || || ||||| |||| || | ||||| | Sbjct 1550174 ATGAGGTCCCTGTGGAGGTTCCTTGAGTTCTCTACTGAGAACTATATTAATTCTGTCCTT 1550233 Query 114322 CAGAGGTCTATTCTTTTCGGGGATGGAGAACCAAGTCTTTCTACCCATTATCACCACGTT 114381 | ||||| |||||| || || ||||||||||| ||||| |||||||| ||||||| | Sbjct 1550234 TAAAGGTCGATTCTTCTCTGGAATGGAGAACCAGGTCTTCCTACCCATAATCACCAAATA 1550293 Query 114382 CTGCTTACCTCTGTCGGAAGACGTAGCGGTCA 114413 ||| |||||| | ||||| || | ||||| Sbjct 1550294 CTGTTTACCTTCTCCTGAAGAAGTTGTGGTCA 1550325 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 406011167148718