Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lipotes_20vexillifer_20[refseq_20GCF_5F000442215.1_202013-07-31] 30,713 sequences; 2,429,212,129 total letters Query= NC_030656.1 Length=133492 Score E Sequences producing significant alignments: (Bits) Value seq23530 158 1e-33 seq12120 118 9e-22 seq5470 118 9e-22 seq15277 113 4e-20 seq20974 98.7 8e-16 >seq23530 Length=2024980 Score = 158 bits (174), Expect = 1e-33 Identities = 289/420 (69%), Gaps = 9/420 (2%) Strand=Plus/Plus Query 4717 CTTTGTCTTTAATCCATTTTAATGCCCAGTTAGCTTTT-TTCTTAACGCACGGAATTGTG 4775 ||||||||| |||| || ||||| | || ||| ||||| || || || |||| Sbjct 954623 CTTTGTCTTCGATCCGGCGCAAGGCCCAATCTGCCTTTCTTCTTTACACAAGGCGTTGTC 954682 Query 4776 TATATAGCGTTAAATA---ATTTACTTTTTTCAAATGGG-TCTTGAATATAAGTGTCTAT 4831 | | ||||| || | ||| |||| || ||| |||| ||| |||||||| | Sbjct 954683 TCAACGGCGTTGAAGAGGAATTCCCTTTCTT----TGGAATCTTTAATGTAAGTGTCAGT 954738 Query 4832 TAGTAGGCTATACATTTCAGAATGTATATTTTCTATAGCAATCTGAAATCCGTAAAAGCA 4891 || || || ||||||||||||||||| ||||| || ||||| || || || || ||| | Sbjct 954739 GAGGAGACTGTACATTTCAGAATGTATGTTTTCCATGGCAATTTGGAAGCCATAGAAGTA 954798 Query 4892 TCTAGCTTCTGTTACTTGAACTTCGTTACAAAATCTTTCTACTAAGTTTTCGTTTACTAT 4951 | ||||| || | |||||||| | | || | || || |||||||| |||||||| Sbjct 954799 ACGGGCTTCCGTAATCTGAACTTCTTGGCTAAGCCGCTCCACCAAGTTTTCATTTACTAT 954858 Query 4952 ACCGTCACTGGCTGCAAAAAACGCCAAAACATGAGATATAAAGTACTGTTCGTCAGGCTT 5011 || ||||| |||||| | || |||| |||| | || | || || || |||||||| Sbjct 954859 GCCATCACTTGCTGCAGAGAAAGCCAGAACACGTGAAGTGAAATATCTCTCCTCAGGCTT 954918 Query 5012 AAGTTTTTTCCAGTGGGGCAAATCTTTAGTTAAATCAACTTCTTCAACAGTCCAAAACGA 5071 || || |||||| | | || || | | || || || ||| | ||||| || || Sbjct 954919 CAGGGCTTCCCAGTGCTGAATGTCCTTGGAAAGGTCCACCTCCTCAGCTGTCCAGAAGGA 954978 Query 5072 CGCTTCCGCTTTTTTGTACATAGACCAAATATCAGGATACTGAATCGGAAGTATGACAAA 5131 || |||||||| | |||| ||||| |||| | || | || |||| |||||||| Sbjct 954979 AGCCTCCGCTTTCCTATACACCTGCCAAACATCACGGTATTCCATAGGAAAGATGACAAA 955038 >seq12120 Length=1614126 Score = 118 bits (130), Expect = 9e-22 Identities = 213/308 (69%), Gaps = 5/308 (2%) Strand=Plus/Plus Query 31765 AGCGCTAGTTAAAACCGATATTCAAATTTCTTTACCTTCAGGGTGCTACGGACGAATAGC 31824 ||| || || ||||| || ||||| || || | ||| |||||||| || || |||| Sbjct 1445040 AGCTCTTGTGAAAACAGACATTCAGATAGCTCTTCCTAATGGGTGCTATGGGAGAGTAGC 1445099 Query 31825 TCCTAGATCTGGATTGGCAGTTAAACACTTTATCGACGTGGGTGCGGGTGTTATAGATTC 31884 ||| | ||||| ||||| | |||||||| || || || || || ||||| |||||| Sbjct 1445100 TCCACGTTCTGGCTTGGCTGCAAAACACTTCATAGATGTAGGAGCTGGTGTCATAGATGA 1445159 Query 31885 AGACTATAGAGGAAACGTTGGAATTGTGTTGTTTAATTTTGG--AGAAAAATCATACAGT 31942 ||| ||||||||||| ||||| |||| ||||||||||||| | |||| | || Sbjct 1445160 AGATTATAGAGGAAATGTTGGTGTTGTACTGTTTAATTTTGGCAAAGAAAAGCTCGAAG- 1445218 Query 31943 ATAAAAAAGGGCGATAGGGTAGCTCAACTAATTTGCGAAAAAATAGAAATGCCCCAAATA 32002 | |||||||| ||| | || || || ||||| ||| ||| || ||||| Sbjct 1445219 -TCAAAAAGGGTGATCGAACTGCACAGCTCATTTGTGAACGGATATTTTACCCAGAAATA 1445277 Query 32003 GAAGTAGCTAATTATCTAGATTGCACGAAAAGAGGCGCTAAAGGCTTTGGATCTACCGGA 32062 || | || | | | ||||| ||| |||| || | ||| ||||| || || ||| Sbjct 1445278 GAGGAAGTTCAAGTTTTAGATGACACTGAAAGGGGTTCAGGAGGTTTTGGTTCCACTGGA 1445337 Query 32063 AATTAATT 32070 || ||||| Sbjct 1445338 AA-TAATT 1445344 >seq5470 Length=1740762 Score = 118 bits (130), Expect = 9e-22 Identities = 123/161 (76%), Gaps = 3/161 (2%) Strand=Plus/Minus Query 31775 AAAACCGATATTCAAATTTCTTTACCTTCAGGGTGCTACGGACGAATAGCTCCTAGATCT 31834 |||||||| ||||| || || | ||||| |||||||| || || ||||| | | || Sbjct 165602 AAAACCGACATTCAGATAGCTCTTCCTTCTGGGTGCTATGGGAGAGTAGCTGCACGTGCT 165543 Query 31835 GGATTGGCAGTTAAACACTTTATCGACGTGGGTGCGGGTGTTATAGATTCAGACTATAGA 31894 || ||||| | |||||||| || || || || || |||| ||| || ||| |||||| Sbjct 165542 GGCTTGGCTGCAAAACACTTCATAGATGTCGGAGCCAGTGTCATAAATGAAGATTATAGA 165483 Query 31895 GGAAACGTTGGAATTGTGTTGTTTAATTTTGG---AGAAAA 31932 ||||||||||| ||||| ||||||||||||| |||||| Sbjct 165482 GGAAACGTTGGTATTGTACTGTTTAATTTTGGCAAAGAAAA 165442 >seq15277 Length=4737824 Score = 113 bits (124), Expect = 4e-20 Identities = 98/122 (80%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 4572 TCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAATCCGGGCATTAAACCTCTCTTTTTA 4631 |||||||||||||| ||||| || ||||| || | |||||||| | |||| ||||| Sbjct 3367422 TCGTCTCTGCTAATAAGTTCATTGGAAAATGTGAGGCCGGGCATCAGTCCTCGTTTTTTG 3367481 Query 4632 AGCCAAAATATAGCGGCAAATGACCCAGAAAAGAATATGCCTTCTACGGCGGCAAACGCT 4691 ||||| ||||| | ||||| || ||||||||||| || ||||| || |||||||| ||| Sbjct 3367482 AGCCAGAATATCGATGCAAAAGAACCAGAAAAGAAGATTCCTTCCACTGCGGCAAAGGCT 3367541 Query 4692 AC 4693 || Sbjct 3367542 AC 3367543 Score = 84.2 bits (92), Expect = 2e-11 Identities = 81/104 (78%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 4812 TCTTGAATATAAGTGTCTATTAGTAGGCTATACATTTCAGAATGTATATTTTCTATAGCA 4871 |||| ||| |||||||| || || || |||||||||||||||||||| || || || ||| Sbjct 3369377 TCTTTAATGTAAGTGTCAATGAGGAGACTATACATTTCAGAATGTATGTTCTCCATGGCA 3369436 Query 4872 ATCTGAAATCCGTAAAAGCATCTAGCTTCTGTTACTTGAACTTC 4915 || || || || || || || | ||||| || | |||||||| Sbjct 3369437 ATTTGGAAGCCATAGAAACAACGGGCTTCCGTAATCTGAACTTC 3369480 >seq20974 Length=1049469 Score = 98.7 bits (108), Expect = 8e-16 Identities = 100/130 (77%), Gaps = 3/130 (2%) Strand=Plus/Plus Query 4921 AAAATCTTTCTACTAAGTTTTCGTTTACTATACCGTCACTGGCTGCAAAAAACGCCAAAA 4980 |||||||| || || ||||| || || || || ||||||||||||||||| || || | Sbjct 255286 AAAATCTT---ACCAAATTTTCATTCACAATTCCATCACTGGCTGCAAAAAAGGCTAAGA 255342 Query 4981 CATGAGATATAAAGTACTGTTCGTCAGGCTTAAGTTTTTTCCAGTGGGGCAAATCTTTAG 5040 ||||| ||||| |||| || || | ||||| || |||||||| || | |||||| | Sbjct 255343 TGTGAGAGATAAAATACTTCTCTTCTGATTTAAGCTTGTTCCAGTGAGGGAGATCTTTTG 255402 Query 5041 TTAAATCAAC 5050 ||||||||| Sbjct 255403 ATAAATCAAC 255412 Score = 82.4 bits (90), Expect = 7e-11 Identities = 65/78 (83%), Gaps = 0/78 (0%) Strand=Plus/Plus Query 4259 TTGGTATTCGGATACTCGCTTTTCGAAGAAATTAGTTTTGCCTTCTAACGAAATATTTTC 4318 ||| || || || ||||| || || |||||||| ||||| || ||||| ||||| ||||| Sbjct 234127 TTGATACTCTGAAACTCGTTTCTCAAAGAAATTTGTTTTCCCCTCTAAAGAAATGTTTTC 234186 Query 4319 CATAAAATCAAACGGATT 4336 |||||||||||| ||||| Sbjct 234187 CATAAAATCAAAGGGATT 234204 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 426889749062429