Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Lipotes_20vexillifer_20[refseq_20GCF_5F000442215.1_202013-07-31]
30,713 sequences; 2,429,212,129 total letters
Query= NC_030656.1
Length=133492
Score E
Sequences producing significant alignments: (Bits) Value
seq23530 158 1e-33
seq12120 118 9e-22
seq5470 118 9e-22
seq15277 113 4e-20
seq20974 98.7 8e-16
>seq23530
Length=2024980
Score = 158 bits (174), Expect = 1e-33
Identities = 289/420 (69%), Gaps = 9/420 (2%)
Strand=Plus/Plus
Query 4717 CTTTGTCTTTAATCCATTTTAATGCCCAGTTAGCTTTT-TTCTTAACGCACGGAATTGTG 4775
||||||||| |||| || ||||| | || ||| ||||| || || || ||||
Sbjct 954623 CTTTGTCTTCGATCCGGCGCAAGGCCCAATCTGCCTTTCTTCTTTACACAAGGCGTTGTC 954682
Query 4776 TATATAGCGTTAAATA---ATTTACTTTTTTCAAATGGG-TCTTGAATATAAGTGTCTAT 4831
| | ||||| || | ||| |||| || ||| |||| ||| |||||||| |
Sbjct 954683 TCAACGGCGTTGAAGAGGAATTCCCTTTCTT----TGGAATCTTTAATGTAAGTGTCAGT 954738
Query 4832 TAGTAGGCTATACATTTCAGAATGTATATTTTCTATAGCAATCTGAAATCCGTAAAAGCA 4891
|| || || ||||||||||||||||| ||||| || ||||| || || || || ||| |
Sbjct 954739 GAGGAGACTGTACATTTCAGAATGTATGTTTTCCATGGCAATTTGGAAGCCATAGAAGTA 954798
Query 4892 TCTAGCTTCTGTTACTTGAACTTCGTTACAAAATCTTTCTACTAAGTTTTCGTTTACTAT 4951
| ||||| || | |||||||| | | || | || || |||||||| ||||||||
Sbjct 954799 ACGGGCTTCCGTAATCTGAACTTCTTGGCTAAGCCGCTCCACCAAGTTTTCATTTACTAT 954858
Query 4952 ACCGTCACTGGCTGCAAAAAACGCCAAAACATGAGATATAAAGTACTGTTCGTCAGGCTT 5011
|| ||||| |||||| | || |||| |||| | || | || || || ||||||||
Sbjct 954859 GCCATCACTTGCTGCAGAGAAAGCCAGAACACGTGAAGTGAAATATCTCTCCTCAGGCTT 954918
Query 5012 AAGTTTTTTCCAGTGGGGCAAATCTTTAGTTAAATCAACTTCTTCAACAGTCCAAAACGA 5071
|| || |||||| | | || || | | || || || ||| | ||||| || ||
Sbjct 954919 CAGGGCTTCCCAGTGCTGAATGTCCTTGGAAAGGTCCACCTCCTCAGCTGTCCAGAAGGA 954978
Query 5072 CGCTTCCGCTTTTTTGTACATAGACCAAATATCAGGATACTGAATCGGAAGTATGACAAA 5131
|| |||||||| | |||| ||||| |||| | || | || |||| ||||||||
Sbjct 954979 AGCCTCCGCTTTCCTATACACCTGCCAAACATCACGGTATTCCATAGGAAAGATGACAAA 955038
>seq12120
Length=1614126
Score = 118 bits (130), Expect = 9e-22
Identities = 213/308 (69%), Gaps = 5/308 (2%)
Strand=Plus/Plus
Query 31765 AGCGCTAGTTAAAACCGATATTCAAATTTCTTTACCTTCAGGGTGCTACGGACGAATAGC 31824
||| || || ||||| || ||||| || || | ||| |||||||| || || ||||
Sbjct 1445040 AGCTCTTGTGAAAACAGACATTCAGATAGCTCTTCCTAATGGGTGCTATGGGAGAGTAGC 1445099
Query 31825 TCCTAGATCTGGATTGGCAGTTAAACACTTTATCGACGTGGGTGCGGGTGTTATAGATTC 31884
||| | ||||| ||||| | |||||||| || || || || || ||||| ||||||
Sbjct 1445100 TCCACGTTCTGGCTTGGCTGCAAAACACTTCATAGATGTAGGAGCTGGTGTCATAGATGA 1445159
Query 31885 AGACTATAGAGGAAACGTTGGAATTGTGTTGTTTAATTTTGG--AGAAAAATCATACAGT 31942
||| ||||||||||| ||||| |||| ||||||||||||| | |||| | ||
Sbjct 1445160 AGATTATAGAGGAAATGTTGGTGTTGTACTGTTTAATTTTGGCAAAGAAAAGCTCGAAG- 1445218
Query 31943 ATAAAAAAGGGCGATAGGGTAGCTCAACTAATTTGCGAAAAAATAGAAATGCCCCAAATA 32002
| |||||||| ||| | || || || ||||| ||| ||| || |||||
Sbjct 1445219 -TCAAAAAGGGTGATCGAACTGCACAGCTCATTTGTGAACGGATATTTTACCCAGAAATA 1445277
Query 32003 GAAGTAGCTAATTATCTAGATTGCACGAAAAGAGGCGCTAAAGGCTTTGGATCTACCGGA 32062
|| | || | | | ||||| ||| |||| || | ||| ||||| || || |||
Sbjct 1445278 GAGGAAGTTCAAGTTTTAGATGACACTGAAAGGGGTTCAGGAGGTTTTGGTTCCACTGGA 1445337
Query 32063 AATTAATT 32070
|| |||||
Sbjct 1445338 AA-TAATT 1445344
>seq5470
Length=1740762
Score = 118 bits (130), Expect = 9e-22
Identities = 123/161 (76%), Gaps = 3/161 (2%)
Strand=Plus/Minus
Query 31775 AAAACCGATATTCAAATTTCTTTACCTTCAGGGTGCTACGGACGAATAGCTCCTAGATCT 31834
|||||||| ||||| || || | ||||| |||||||| || || ||||| | | ||
Sbjct 165602 AAAACCGACATTCAGATAGCTCTTCCTTCTGGGTGCTATGGGAGAGTAGCTGCACGTGCT 165543
Query 31835 GGATTGGCAGTTAAACACTTTATCGACGTGGGTGCGGGTGTTATAGATTCAGACTATAGA 31894
|| ||||| | |||||||| || || || || || |||| ||| || ||| ||||||
Sbjct 165542 GGCTTGGCTGCAAAACACTTCATAGATGTCGGAGCCAGTGTCATAAATGAAGATTATAGA 165483
Query 31895 GGAAACGTTGGAATTGTGTTGTTTAATTTTGG---AGAAAA 31932
||||||||||| ||||| ||||||||||||| ||||||
Sbjct 165482 GGAAACGTTGGTATTGTACTGTTTAATTTTGGCAAAGAAAA 165442
>seq15277
Length=4737824
Score = 113 bits (124), Expect = 4e-20
Identities = 98/122 (80%), Gaps = 0/122 (0%)
Strand=Plus/Plus
Query 4572 TCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAATCCGGGCATTAAACCTCTCTTTTTA 4631
|||||||||||||| ||||| || ||||| || | |||||||| | |||| |||||
Sbjct 3367422 TCGTCTCTGCTAATAAGTTCATTGGAAAATGTGAGGCCGGGCATCAGTCCTCGTTTTTTG 3367481
Query 4632 AGCCAAAATATAGCGGCAAATGACCCAGAAAAGAATATGCCTTCTACGGCGGCAAACGCT 4691
||||| ||||| | ||||| || ||||||||||| || ||||| || |||||||| |||
Sbjct 3367482 AGCCAGAATATCGATGCAAAAGAACCAGAAAAGAAGATTCCTTCCACTGCGGCAAAGGCT 3367541
Query 4692 AC 4693
||
Sbjct 3367542 AC 3367543
Score = 84.2 bits (92), Expect = 2e-11
Identities = 81/104 (78%), Gaps = 0/104 (0%)
Strand=Plus/Plus
Query 4812 TCTTGAATATAAGTGTCTATTAGTAGGCTATACATTTCAGAATGTATATTTTCTATAGCA 4871
|||| ||| |||||||| || || || |||||||||||||||||||| || || || |||
Sbjct 3369377 TCTTTAATGTAAGTGTCAATGAGGAGACTATACATTTCAGAATGTATGTTCTCCATGGCA 3369436
Query 4872 ATCTGAAATCCGTAAAAGCATCTAGCTTCTGTTACTTGAACTTC 4915
|| || || || || || || | ||||| || | ||||||||
Sbjct 3369437 ATTTGGAAGCCATAGAAACAACGGGCTTCCGTAATCTGAACTTC 3369480
>seq20974
Length=1049469
Score = 98.7 bits (108), Expect = 8e-16
Identities = 100/130 (77%), Gaps = 3/130 (2%)
Strand=Plus/Plus
Query 4921 AAAATCTTTCTACTAAGTTTTCGTTTACTATACCGTCACTGGCTGCAAAAAACGCCAAAA 4980
|||||||| || || ||||| || || || || ||||||||||||||||| || || |
Sbjct 255286 AAAATCTT---ACCAAATTTTCATTCACAATTCCATCACTGGCTGCAAAAAAGGCTAAGA 255342
Query 4981 CATGAGATATAAAGTACTGTTCGTCAGGCTTAAGTTTTTTCCAGTGGGGCAAATCTTTAG 5040
||||| ||||| |||| || || | ||||| || |||||||| || | |||||| |
Sbjct 255343 TGTGAGAGATAAAATACTTCTCTTCTGATTTAAGCTTGTTCCAGTGAGGGAGATCTTTTG 255402
Query 5041 TTAAATCAAC 5050
|||||||||
Sbjct 255403 ATAAATCAAC 255412
Score = 82.4 bits (90), Expect = 7e-11
Identities = 65/78 (83%), Gaps = 0/78 (0%)
Strand=Plus/Plus
Query 4259 TTGGTATTCGGATACTCGCTTTTCGAAGAAATTAGTTTTGCCTTCTAACGAAATATTTTC 4318
||| || || || ||||| || || |||||||| ||||| || ||||| ||||| |||||
Sbjct 234127 TTGATACTCTGAAACTCGTTTCTCAAAGAAATTTGTTTTCCCCTCTAAAGAAATGTTTTC 234186
Query 4319 CATAAAATCAAACGGATT 4336
|||||||||||| |||||
Sbjct 234187 CATAAAATCAAAGGGATT 234204
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 426889749062429
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |