Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lipotes_20vexillifer_20[refseq_20GCF_5F000442215.1_202013-07-31] 30,713 sequences; 2,429,212,129 total letters Query= NC_030842.1 Length=115510 Score E Sequences producing significant alignments: (Bits) Value seq17408 152 4e-32 seq26173 136 3e-27 >seq17408 Length=748846 Score = 152 bits (168), Expect = 4e-32 Identities = 132/164 (80%), Gaps = 0/164 (0%) Strand=Plus/Plus Query 27208 AGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGT 27267 || || |||| ||| || |||||||| ||||| || | ||||||||||||||| ||||| Sbjct 535766 AGGCCCGTGATGTGTGCGATCATGTAGGTGAGCAGGGCGTAGCTGGCGATGTTGAAGGGC 535825 Query 27268 ACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCATCGCTT 27327 || || || |||||||| || ||||||||||| ||||| || || ||||| || | Sbjct 535826 ACACCCAGGCCCATGTCTCCTGACCTCTGGTACAGCTGGCAGGACAGCTCACCGTTCACC 535885 Query 27328 ACGTAAAACTGACATATGGCGTGGCACGGAGGAAGAGCCATGAG 27371 ||||||||||| || | ||||||||||||||| || |||||||| Sbjct 535886 ACGTAAAACTGGCAAAGGGCGTGGCACGGAGGTAGGGCCATGAG 535929 Score = 82.4 bits (90), Expect = 6e-11 Identities = 119/168 (71%), Gaps = 0/168 (0%) Strand=Plus/Plus Query 27489 CATGTCCGTGTACTCTGCTCCGAAATGCCTCCATTGGAACCCGTACACCGGTCCCAGGTC 27548 ||| || |||| || || || ||||||||||| || || || || || || || | || Sbjct 539033 CATATCTTTGTATTCGGCCCCAAAATGCCTCCACTGAAAGCCATAAACTGGGCCTAAATC 539092 Query 27549 TCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTC 27608 || ||| | ||| ||| ||| ||||||| ||||||| ||| || ||||| | Sbjct 539093 CCCTTCTGCTCTGGTGGAGAATCCCAGGCTGTCCAAGAAGTCTCGGGACCCATTGGCAGC 539152 Query 27609 CCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCC 27656 |||||| || || ||||| || ||||| || | ||||||||| || Sbjct 539153 CCAGATTTTCACTCCCTTGGAAGACAGCTCCTTAGCGTTTGTGGATCC 539200 >seq26173 Length=4939203 Score = 136 bits (150), Expect = 3e-27 Identities = 337/502 (67%), Gaps = 17/502 (3%) Strand=Plus/Minus Query 27130 AGCTGAGTCTTCAGCGGTTCCACGTGATCCAGGTAGACGTGAGCGTCTCCCAGGGTGTGG 27189 ||||| | |||||| | || |||||||||||| | ||| || ||||||| ||||| Sbjct 2187561 AGCTGCATTTTCAGCAGCTCAGTGTGATCCAGGTAAATGTGTGCATCTCCCAAAGTGTGT 2187502 Query 27190 ACAAACTCTCCCGGTTCTAGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAG 27249 ||| | || || || | || || |||| ||| || |||||||| ||||| || | ||| Sbjct 2187501 ACAGAGTCACCTGGCTTCAGGCCTGTGATGTGTGCAATCATGTAGGTGAGCAGGGCATAG 2187442 Query 27250 CTGGCGATGTTAAAGGGTACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACAC 27309 ||||||||||| |||| || || || ||| |||| || ||| ||||||| ||||| || Sbjct 2187441 CTGGCGATGTTGAAGGACACACCCAGGCCCCTGTCTCCTGACTTCTGGTACAGCTG-CAG 2187383 Query 27310 GAGAGCTCTCCATCGCTTACGTAAAACTGACATATGGCGTGGCACGGAGGAA-------G 27362 || || | || | ||||| || || || | ||| |||||| | || | | Sbjct 2187382 GACAGTCATGGTTCAC-CACGTAGAAGTGGCAAAGGGCATGGCACAGGGGCAGGGTGGTG 2187324 Query 27363 AGCCATGAGGCCCAAGTCTTTGGGGTTCCAGGCGCACACGATGATGCGCCTGTCTTCTGG 27422 | ||||| | ||||| | ||||| || || | ||||| | |||||||| || Sbjct 2187323 GGGTATGAGAGGAAGATCTTT-CGATTCCAAGCACATAGAATGATTCTTCTGTCTTCAGG 2187265 Query 27423 GTTGTTCCTGATGAGGTCCACGGCGTTTTGCAGCTGATCCACCCCCATCCCCGAGT--AG 27480 |||| | |||| ||| | | |||||||| || || | || || || | | Sbjct 2187264 GTTGGTTTTGATTGTGTCAATCACCTTTTGCAGTTGGTCTGCTCCTTGACCTGAATAAAT 2187205 Query 27481 TCTACCCTCATGTCCGTGTACTCTGCTCCGAAATGCCTCCATTGGAACCCGTACACCGGT 27540 || | | || || |||| || || | ||| ||||||| || || | || || | Sbjct 2187204 TCAAATC-CACATCTTTGTATTCGGCCACCAAAAGCCTCCACTGAAAGCTATAAACTAGG 2187146 Query 27541 CCCAGGTCTCCCTCTTCCCTGTGCTCGA-AG-CCCCTCTTGTCCAAAAAGTCTCTGGAAC 27598 || | || || |||| || || | || || || ||||||| ||||||| ||| | Sbjct 2187145 CCTAAATCCCCTTCTT--CTTTGGTGGAGAGTACCAGGCTGTCCAAGAAGTCTCGGGACC 2187088 Query 27599 CGTTGGCGTCCCAGATCTTTAC 27620 || ||| |||||||| || || Sbjct 2187087 TGTAGGCATCCCAGATTTTCAC 2187066 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 369368888027903