Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Lipotes_20vexillifer_20[refseq_20GCF_5F000442215.1_202013-07-31]
30,713 sequences; 2,429,212,129 total letters
Query= NC_030842.1
Length=115510
Score E
Sequences producing significant alignments: (Bits) Value
seq17408 152 4e-32
seq26173 136 3e-27
>seq17408
Length=748846
Score = 152 bits (168), Expect = 4e-32
Identities = 132/164 (80%), Gaps = 0/164 (0%)
Strand=Plus/Plus
Query 27208 AGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGT 27267
|| || |||| ||| || |||||||| ||||| || | ||||||||||||||| |||||
Sbjct 535766 AGGCCCGTGATGTGTGCGATCATGTAGGTGAGCAGGGCGTAGCTGGCGATGTTGAAGGGC 535825
Query 27268 ACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCATCGCTT 27327
|| || || |||||||| || ||||||||||| ||||| || || ||||| || |
Sbjct 535826 ACACCCAGGCCCATGTCTCCTGACCTCTGGTACAGCTGGCAGGACAGCTCACCGTTCACC 535885
Query 27328 ACGTAAAACTGACATATGGCGTGGCACGGAGGAAGAGCCATGAG 27371
||||||||||| || | ||||||||||||||| || ||||||||
Sbjct 535886 ACGTAAAACTGGCAAAGGGCGTGGCACGGAGGTAGGGCCATGAG 535929
Score = 82.4 bits (90), Expect = 6e-11
Identities = 119/168 (71%), Gaps = 0/168 (0%)
Strand=Plus/Plus
Query 27489 CATGTCCGTGTACTCTGCTCCGAAATGCCTCCATTGGAACCCGTACACCGGTCCCAGGTC 27548
||| || |||| || || || ||||||||||| || || || || || || || | ||
Sbjct 539033 CATATCTTTGTATTCGGCCCCAAAATGCCTCCACTGAAAGCCATAAACTGGGCCTAAATC 539092
Query 27549 TCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTC 27608
|| ||| | ||| ||| ||| ||||||| ||||||| ||| || ||||| |
Sbjct 539093 CCCTTCTGCTCTGGTGGAGAATCCCAGGCTGTCCAAGAAGTCTCGGGACCCATTGGCAGC 539152
Query 27609 CCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCC 27656
|||||| || || ||||| || ||||| || | ||||||||| ||
Sbjct 539153 CCAGATTTTCACTCCCTTGGAAGACAGCTCCTTAGCGTTTGTGGATCC 539200
>seq26173
Length=4939203
Score = 136 bits (150), Expect = 3e-27
Identities = 337/502 (67%), Gaps = 17/502 (3%)
Strand=Plus/Minus
Query 27130 AGCTGAGTCTTCAGCGGTTCCACGTGATCCAGGTAGACGTGAGCGTCTCCCAGGGTGTGG 27189
||||| | |||||| | || |||||||||||| | ||| || ||||||| |||||
Sbjct 2187561 AGCTGCATTTTCAGCAGCTCAGTGTGATCCAGGTAAATGTGTGCATCTCCCAAAGTGTGT 2187502
Query 27190 ACAAACTCTCCCGGTTCTAGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAG 27249
||| | || || || | || || |||| ||| || |||||||| ||||| || | |||
Sbjct 2187501 ACAGAGTCACCTGGCTTCAGGCCTGTGATGTGTGCAATCATGTAGGTGAGCAGGGCATAG 2187442
Query 27250 CTGGCGATGTTAAAGGGTACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACAC 27309
||||||||||| |||| || || || ||| |||| || ||| ||||||| ||||| ||
Sbjct 2187441 CTGGCGATGTTGAAGGACACACCCAGGCCCCTGTCTCCTGACTTCTGGTACAGCTG-CAG 2187383
Query 27310 GAGAGCTCTCCATCGCTTACGTAAAACTGACATATGGCGTGGCACGGAGGAA-------G 27362
|| || | || | ||||| || || || | ||| |||||| | || | |
Sbjct 2187382 GACAGTCATGGTTCAC-CACGTAGAAGTGGCAAAGGGCATGGCACAGGGGCAGGGTGGTG 2187324
Query 27363 AGCCATGAGGCCCAAGTCTTTGGGGTTCCAGGCGCACACGATGATGCGCCTGTCTTCTGG 27422
| ||||| | ||||| | ||||| || || | ||||| | |||||||| ||
Sbjct 2187323 GGGTATGAGAGGAAGATCTTT-CGATTCCAAGCACATAGAATGATTCTTCTGTCTTCAGG 2187265
Query 27423 GTTGTTCCTGATGAGGTCCACGGCGTTTTGCAGCTGATCCACCCCCATCCCCGAGT--AG 27480
|||| | |||| ||| | | |||||||| || || | || || || | |
Sbjct 2187264 GTTGGTTTTGATTGTGTCAATCACCTTTTGCAGTTGGTCTGCTCCTTGACCTGAATAAAT 2187205
Query 27481 TCTACCCTCATGTCCGTGTACTCTGCTCCGAAATGCCTCCATTGGAACCCGTACACCGGT 27540
|| | | || || |||| || || | ||| ||||||| || || | || || |
Sbjct 2187204 TCAAATC-CACATCTTTGTATTCGGCCACCAAAAGCCTCCACTGAAAGCTATAAACTAGG 2187146
Query 27541 CCCAGGTCTCCCTCTTCCCTGTGCTCGA-AG-CCCCTCTTGTCCAAAAAGTCTCTGGAAC 27598
|| | || || |||| || || | || || || ||||||| ||||||| ||| |
Sbjct 2187145 CCTAAATCCCCTTCTT--CTTTGGTGGAGAGTACCAGGCTGTCCAAGAAGTCTCGGGACC 2187088
Query 27599 CGTTGGCGTCCCAGATCTTTAC 27620
|| ||| |||||||| || ||
Sbjct 2187087 TGTAGGCATCCCAGATTTTCAC 2187066
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 369368888027903
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |