Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Lipotes_20vexillifer_20[refseq_20GCF_5F000442215.1_202013-07-31]
30,713 sequences; 2,429,212,129 total letters
Query= NC_030909.1
Length=50183
Score E
Sequences producing significant alignments: (Bits) Value
seq6053 205 3e-48
seq6890 176 1e-39
seq15544 113 1e-20
seq25380 100 9e-17
seq9320 100 9e-17
seq24407 95.1 4e-15
seq4066 93.3 1e-14
seq7520 87.8 6e-13
>seq6053
Length=4391
Score = 205 bits (226), Expect = 3e-48
Identities = 208/270 (77%), Gaps = 6/270 (2%)
Strand=Plus/Plus
Query 33922 CCCGGAGCGAGCTGCTCGAATCGCGAGTACTTACCCAGGAACGCGCACCGGACAGTGC-- 33979
||||| || | | |||||| || | |||||| || | |||||| || ||| ||
Sbjct 529 CCCGGCGCCAAGTTCTCGAAACGGGTGTACTTGCCGATGAACGCCAGGCGCACAAAGCCA 588
Query 33980 -TTGGCTCGCCGTTGCGGTGCTTCGCGATGATCAACTCAGCCACGCCGCGGTACTGGGTG 34038
||||| ||||| || || || ||||||| | || |||||||| || || |||
Sbjct 589 ATTGGC---CCGTTACGCTGTTTGCCGATGATGATTTCCGCCACGCCTTTGTGCTCGGTT 645
Query 34039 TCCGGGTGATAGACCTCGTCTCGGTACACGAACATGATCACGTCGGCGTCCTGCTCGATC 34098
|| |||||||| |||||||| ||||||||||||||||| ||||||||||||||||||||
Sbjct 646 TCGGGGTGATACACCTCGTCGCGGTACACGAACATGATGACGTCGGCGTCCTGCTCGATT 705
Query 34099 GCCCCGGACTCGCGCAGGTCCGACATCATCGGTCGCTTGTTCGGCCGCTGCTCCAGGGAG 34158
|| ||||| || |||| ||| || ||| ||| || |||||||| ||||||||||| |||
Sbjct 706 GCACCGGATTCACGCAAGTCGGAGTTCACCGGGCGTTTGTTCGGGCGCTGCTCCAGAGAG 765
Query 34159 CGGTTGAGCTGCGACAGCACGATCACGGGG 34188
|||||||||||||| || | || || |||
Sbjct 766 CGGTTGAGCTGCGAGAGGGCAATGACCGGG 795
>seq6890
Length=6377
Score = 176 bits (194), Expect = 1e-39
Identities = 160/202 (79%), Gaps = 0/202 (0%)
Strand=Plus/Minus
Query 33987 GCCGTTGCGGTGCTTCGCGATGATCAACTCAGCCACGCCGCGGTACTGGGTGTCCGGGTG 34046
||||||||| ||| ||||||| | ||| || | ||| ||| | ||| | ||||||
Sbjct 5025 GCCGTTGCGTGCCTTGCCGATGATGATCTCGGCAATGCCTTTGTATTCGGTCTGCGGGTG 4966
Query 34047 ATAGACCTCGTCTCGGTACACGAACATGATCACGTCGGCGTCCTGCTCGATCGCCCCGGA 34106
||| |||||||| ||||| ||||||||||| ||||| |||||||| ||||| || |||||
Sbjct 4965 ATACACCTCGTCGCGGTAAACGAACATGATGACGTCTGCGTCCTGTTCGATTGCTCCGGA 4906
Query 34107 CTCGCGCAGGTCCGACATCATCGGTCGCTTGTTCGGCCGCTGCTCCAGGGAGCGGTTGAG 34166
|| || | ||| || | ||||| ||||||||||| || ||||| ||||| ||||||||
Sbjct 4905 TTCCCGTAAGTCTGAGTTGATCGGGCGCTTGTTCGGACGTTGCTCTAGGGATCGGTTGAG 4846
Query 34167 CTGCGACAGCACGATCACGGGG 34188
|||||| ||| ||| ||| |||
Sbjct 4845 CTGCGATAGCGCGACCACTGGG 4824
>seq15544
Length=893
Score = 113 bits (124), Expect = 1e-20
Identities = 92/112 (82%), Gaps = 0/112 (0%)
Strand=Plus/Minus
Query 34077 CACGTCGGCGTCCTGCTCGATCGCCCCGGACTCGCGCAGGTCCGACATCATCGGTCGCTT 34136
|||||||||||||||||||||||| ||||| || |||| ||| || ||| ||| |||||
Sbjct 893 CACGTCGGCGTCCTGCTCGATCGCTCCGGATTCCCGCAAGTCGGAGTTCACCGGACGCTT 834
Query 34137 GTTCGGCCGCTGCTCCAGGGAGCGGTTGAGCTGCGACAGCACGATCACGGGG 34188
||| || || || |||||||| ||||||||||| |||| | | | ||| |||
Sbjct 833 GTTGGGACGTTGTTCCAGGGAACGGTTGAGCTGGGACAACGCCACCACCGGG 782
>seq25380
Length=2650
Score = 100 bits (110), Expect = 9e-17
Identities = 133/182 (73%), Gaps = 2/182 (1%)
Strand=Plus/Minus
Query 40028 TCCCACTTCAGCGTCACGGTGCCGTCGTCATTGAAGACCATGTCGATGCCGTCCGTCTCG 40087
|||||| | |||||||| || |||| || |||||| |||||||||||||||||||||
Sbjct 787 TCCCACCTTAGCGTCACCGTCTCGTCATCGTTGAAGGTAATGTCGATGCCGTCCGTCTCG 728
Query 40088 GATAGCAGTTCCATCACCTGATCCCACGCTTCATCCGGATCCGTGTCCAGGCGATGGATC 40147
| |||| |||| |||| ||||| | |||| || || ||||| ||||| |||
Sbjct 727 GCCAGCAAGCCCATTACCTCGCCCCACTCCCTATCCCCGTCGGTATCCAGCCGATGAATC 668
Query 40148 GTCACCGTGCGCAGGTCCTGCG-CTTTCGGTGAGTTGATCATCTCCGATATGCGGAGCCC 40206
||||| |||| | || |||| | ||||| |||||||| | || | || |||||
Sbjct 667 TTCACCCAGCGCCGCTCTTGCGAAAATGGGTGA-TTGATCATTCCTGAAACTCGCAGCCC 609
Query 40207 CA 40208
||
Sbjct 608 CA 607
>seq9320
Length=497
Score = 100 bits (110), Expect = 9e-17
Identities = 114/153 (75%), Gaps = 0/153 (0%)
Strand=Plus/Minus
Query 47915 CTGTACCAGGCGGCTGTTGAGTTCGTCCGCGAAACCCGGCGAGCGTCGATTTCGGCGATC 47974
|||||| | | || || ||||||| | ||| | ||| || ||||| |||||||| |
Sbjct 254 CTGTACGACGAAGCCGTACAGTTCGTGCTCGAGAGCCGCCGCGCGTCCATTTCGGCCGTA 195
Query 47975 CAGCGCAAGCTGAAGATCGGCTACAACCGCGCAGCCCGCATCATCGAGCGGATGGAGAAA 48034
|| |||||||| ||||||||||||||||| || |||||||| ||||| ||||| |
Sbjct 194 CAACGCAAGCTAAAGATCGGCTACAACCGGGCGGCCCGCATGATCGAAGCCATGGAAATG 135
Query 48035 GAAGGCGTAGTCACAGCGGCCGACAGCAACGGC 48067
| ||||| || || || |||||||||||
Sbjct 134 GCTGGCGTGGTGACTCCGATGAACAGCAACGGC 102
>seq24407
Length=4395
Score = 95.1 bits (104), Expect = 4e-15
Identities = 94/122 (77%), Gaps = 0/122 (0%)
Strand=Plus/Minus
Query 35894 TGAAACGTTACATCGCCGTTTCCGCAACGCAGGCACAACAGCATGATGTAACGGCGCTGG 35953
||||||||| || ||||| | ||| ||||| || ||||||| | ||||||||
Sbjct 3548 TGAAACGTTTCAATACCGTTACTGCATTCAAGGCAAAAGAGCATGACCAAGCGGCGCTGC 3489
Query 35954 TCGACCTCGCTCAGCATCTGGACCTTCGGGTCGGTGGCGAACTCCGCGTACATGCGGAAC 36013
| ||||||||| ||||||||| || ||||| ||||||||||| | ||||| ||||||
Sbjct 3488 ATGGCCTCGCTCATCATCTGGACTTTGGGGTCTGTGGCGAACTCGCCATACATCCGGAAC 3429
Query 36014 CA 36015
||
Sbjct 3428 CA 3427
>seq4066
Length=2962
Score = 93.3 bits (102), Expect = 1e-14
Identities = 139/193 (72%), Gaps = 6/193 (3%)
Strand=Plus/Minus
Query 40019 TCCTGTTCCTCCCACTTCAGCGTCACGGTGCCGTCGTCATTGAAGACCATGTCGATGCCG 40078
||||| | ||||||| ||| |||||| ||||||||||||||| || || | ||
Sbjct 469 TCCTGCTGCTCCCACCTCACTGTCACGCTGCCGTCGTCATTGAGCGTCAGTTCAAGCTCG 410
Query 40079 TCCGTCTCG--GATAGCAGTTCCATCACCTGATCCCACGCTTCATCCGGATCCGTGTCCA 40136
||||||||| ||| || | || ||||| |||||| | ||| ||||||| ||
Sbjct 409 TCCGTCTCGGTGATTACACT--CAGCACCTCGTCCCACTCCCGATCACCGTCCGTGTACA 352
Query 40137 GGCGATGGATCGTCACCGTGCGCAGGTCCTGCGCTTTC-GGTGAGTTGATCATCTCCGAT 40195
|||||| ||||||||| |||| | |||| || | ||||| ||||||||| ||
Sbjct 351 AGCGATGAATCGTCACCCAGCGCTGAGCCTGAGCGACCGGGTGA-TTGATCATCGATGAG 293
Query 40196 ATGCGGAGCCCCA 40208
| ||| |||||||
Sbjct 292 ACGCGCAGCCCCA 280
>seq7520
Length=222
Score = 87.8 bits (96), Expect = 6e-13
Identities = 83/105 (79%), Gaps = 2/105 (2%)
Strand=Plus/Plus
Query 11876 ACGCCGGCTCGATGGCCGGCGTTCGGGAGGATTTGCAGCAGTTGCTGCTCAGTGATAGGC 11935
|||||||| |||||||||||||||| || ||||||||||||||||| || ||||||
Sbjct 70 ACGCCGGCATTGCGGCCGGCGTTCGGGAGTATCTGCAGCAGTTGCTGCTCGGTAATAGGC 129
Query 11936 ATTCTGATCTCCAGGCACAAAAAAGCCCGCAGAGT--GCGGGCTG 11978
|| ||||||||| || ||||||||| | | ||||||||
Sbjct 130 ATGGCTTTCTCCAGGCGTAATAAAGCCCGCTCAATTGGCGGGCTG 174
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 160405476071370
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |