Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lipotes_20vexillifer_20[refseq_20GCF_5F000442215.1_202013-07-31] 30,713 sequences; 2,429,212,129 total letters Query= NC_030909.1 Length=50183 Score E Sequences producing significant alignments: (Bits) Value seq6053 205 3e-48 seq6890 176 1e-39 seq15544 113 1e-20 seq25380 100 9e-17 seq9320 100 9e-17 seq24407 95.1 4e-15 seq4066 93.3 1e-14 seq7520 87.8 6e-13 >seq6053 Length=4391 Score = 205 bits (226), Expect = 3e-48 Identities = 208/270 (77%), Gaps = 6/270 (2%) Strand=Plus/Plus Query 33922 CCCGGAGCGAGCTGCTCGAATCGCGAGTACTTACCCAGGAACGCGCACCGGACAGTGC-- 33979 ||||| || | | |||||| || | |||||| || | |||||| || ||| || Sbjct 529 CCCGGCGCCAAGTTCTCGAAACGGGTGTACTTGCCGATGAACGCCAGGCGCACAAAGCCA 588 Query 33980 -TTGGCTCGCCGTTGCGGTGCTTCGCGATGATCAACTCAGCCACGCCGCGGTACTGGGTG 34038 ||||| ||||| || || || ||||||| | || |||||||| || || ||| Sbjct 589 ATTGGC---CCGTTACGCTGTTTGCCGATGATGATTTCCGCCACGCCTTTGTGCTCGGTT 645 Query 34039 TCCGGGTGATAGACCTCGTCTCGGTACACGAACATGATCACGTCGGCGTCCTGCTCGATC 34098 || |||||||| |||||||| ||||||||||||||||| |||||||||||||||||||| Sbjct 646 TCGGGGTGATACACCTCGTCGCGGTACACGAACATGATGACGTCGGCGTCCTGCTCGATT 705 Query 34099 GCCCCGGACTCGCGCAGGTCCGACATCATCGGTCGCTTGTTCGGCCGCTGCTCCAGGGAG 34158 || ||||| || |||| ||| || ||| ||| || |||||||| ||||||||||| ||| Sbjct 706 GCACCGGATTCACGCAAGTCGGAGTTCACCGGGCGTTTGTTCGGGCGCTGCTCCAGAGAG 765 Query 34159 CGGTTGAGCTGCGACAGCACGATCACGGGG 34188 |||||||||||||| || | || || ||| Sbjct 766 CGGTTGAGCTGCGAGAGGGCAATGACCGGG 795 >seq6890 Length=6377 Score = 176 bits (194), Expect = 1e-39 Identities = 160/202 (79%), Gaps = 0/202 (0%) Strand=Plus/Minus Query 33987 GCCGTTGCGGTGCTTCGCGATGATCAACTCAGCCACGCCGCGGTACTGGGTGTCCGGGTG 34046 ||||||||| ||| ||||||| | ||| || | ||| ||| | ||| | |||||| Sbjct 5025 GCCGTTGCGTGCCTTGCCGATGATGATCTCGGCAATGCCTTTGTATTCGGTCTGCGGGTG 4966 Query 34047 ATAGACCTCGTCTCGGTACACGAACATGATCACGTCGGCGTCCTGCTCGATCGCCCCGGA 34106 ||| |||||||| ||||| ||||||||||| ||||| |||||||| ||||| || ||||| Sbjct 4965 ATACACCTCGTCGCGGTAAACGAACATGATGACGTCTGCGTCCTGTTCGATTGCTCCGGA 4906 Query 34107 CTCGCGCAGGTCCGACATCATCGGTCGCTTGTTCGGCCGCTGCTCCAGGGAGCGGTTGAG 34166 || || | ||| || | ||||| ||||||||||| || ||||| ||||| |||||||| Sbjct 4905 TTCCCGTAAGTCTGAGTTGATCGGGCGCTTGTTCGGACGTTGCTCTAGGGATCGGTTGAG 4846 Query 34167 CTGCGACAGCACGATCACGGGG 34188 |||||| ||| ||| ||| ||| Sbjct 4845 CTGCGATAGCGCGACCACTGGG 4824 >seq15544 Length=893 Score = 113 bits (124), Expect = 1e-20 Identities = 92/112 (82%), Gaps = 0/112 (0%) Strand=Plus/Minus Query 34077 CACGTCGGCGTCCTGCTCGATCGCCCCGGACTCGCGCAGGTCCGACATCATCGGTCGCTT 34136 |||||||||||||||||||||||| ||||| || |||| ||| || ||| ||| ||||| Sbjct 893 CACGTCGGCGTCCTGCTCGATCGCTCCGGATTCCCGCAAGTCGGAGTTCACCGGACGCTT 834 Query 34137 GTTCGGCCGCTGCTCCAGGGAGCGGTTGAGCTGCGACAGCACGATCACGGGG 34188 ||| || || || |||||||| ||||||||||| |||| | | | ||| ||| Sbjct 833 GTTGGGACGTTGTTCCAGGGAACGGTTGAGCTGGGACAACGCCACCACCGGG 782 >seq25380 Length=2650 Score = 100 bits (110), Expect = 9e-17 Identities = 133/182 (73%), Gaps = 2/182 (1%) Strand=Plus/Minus Query 40028 TCCCACTTCAGCGTCACGGTGCCGTCGTCATTGAAGACCATGTCGATGCCGTCCGTCTCG 40087 |||||| | |||||||| || |||| || |||||| ||||||||||||||||||||| Sbjct 787 TCCCACCTTAGCGTCACCGTCTCGTCATCGTTGAAGGTAATGTCGATGCCGTCCGTCTCG 728 Query 40088 GATAGCAGTTCCATCACCTGATCCCACGCTTCATCCGGATCCGTGTCCAGGCGATGGATC 40147 | |||| |||| |||| ||||| | |||| || || ||||| ||||| ||| Sbjct 727 GCCAGCAAGCCCATTACCTCGCCCCACTCCCTATCCCCGTCGGTATCCAGCCGATGAATC 668 Query 40148 GTCACCGTGCGCAGGTCCTGCG-CTTTCGGTGAGTTGATCATCTCCGATATGCGGAGCCC 40206 ||||| |||| | || |||| | ||||| |||||||| | || | || ||||| Sbjct 667 TTCACCCAGCGCCGCTCTTGCGAAAATGGGTGA-TTGATCATTCCTGAAACTCGCAGCCC 609 Query 40207 CA 40208 || Sbjct 608 CA 607 >seq9320 Length=497 Score = 100 bits (110), Expect = 9e-17 Identities = 114/153 (75%), Gaps = 0/153 (0%) Strand=Plus/Minus Query 47915 CTGTACCAGGCGGCTGTTGAGTTCGTCCGCGAAACCCGGCGAGCGTCGATTTCGGCGATC 47974 |||||| | | || || ||||||| | ||| | ||| || ||||| |||||||| | Sbjct 254 CTGTACGACGAAGCCGTACAGTTCGTGCTCGAGAGCCGCCGCGCGTCCATTTCGGCCGTA 195 Query 47975 CAGCGCAAGCTGAAGATCGGCTACAACCGCGCAGCCCGCATCATCGAGCGGATGGAGAAA 48034 || |||||||| ||||||||||||||||| || |||||||| ||||| ||||| | Sbjct 194 CAACGCAAGCTAAAGATCGGCTACAACCGGGCGGCCCGCATGATCGAAGCCATGGAAATG 135 Query 48035 GAAGGCGTAGTCACAGCGGCCGACAGCAACGGC 48067 | ||||| || || || ||||||||||| Sbjct 134 GCTGGCGTGGTGACTCCGATGAACAGCAACGGC 102 >seq24407 Length=4395 Score = 95.1 bits (104), Expect = 4e-15 Identities = 94/122 (77%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 35894 TGAAACGTTACATCGCCGTTTCCGCAACGCAGGCACAACAGCATGATGTAACGGCGCTGG 35953 ||||||||| || ||||| | ||| ||||| || ||||||| | |||||||| Sbjct 3548 TGAAACGTTTCAATACCGTTACTGCATTCAAGGCAAAAGAGCATGACCAAGCGGCGCTGC 3489 Query 35954 TCGACCTCGCTCAGCATCTGGACCTTCGGGTCGGTGGCGAACTCCGCGTACATGCGGAAC 36013 | ||||||||| ||||||||| || ||||| ||||||||||| | ||||| |||||| Sbjct 3488 ATGGCCTCGCTCATCATCTGGACTTTGGGGTCTGTGGCGAACTCGCCATACATCCGGAAC 3429 Query 36014 CA 36015 || Sbjct 3428 CA 3427 >seq4066 Length=2962 Score = 93.3 bits (102), Expect = 1e-14 Identities = 139/193 (72%), Gaps = 6/193 (3%) Strand=Plus/Minus Query 40019 TCCTGTTCCTCCCACTTCAGCGTCACGGTGCCGTCGTCATTGAAGACCATGTCGATGCCG 40078 ||||| | ||||||| ||| |||||| ||||||||||||||| || || | || Sbjct 469 TCCTGCTGCTCCCACCTCACTGTCACGCTGCCGTCGTCATTGAGCGTCAGTTCAAGCTCG 410 Query 40079 TCCGTCTCG--GATAGCAGTTCCATCACCTGATCCCACGCTTCATCCGGATCCGTGTCCA 40136 ||||||||| ||| || | || ||||| |||||| | ||| ||||||| || Sbjct 409 TCCGTCTCGGTGATTACACT--CAGCACCTCGTCCCACTCCCGATCACCGTCCGTGTACA 352 Query 40137 GGCGATGGATCGTCACCGTGCGCAGGTCCTGCGCTTTC-GGTGAGTTGATCATCTCCGAT 40195 |||||| ||||||||| |||| | |||| || | ||||| ||||||||| || Sbjct 351 AGCGATGAATCGTCACCCAGCGCTGAGCCTGAGCGACCGGGTGA-TTGATCATCGATGAG 293 Query 40196 ATGCGGAGCCCCA 40208 | ||| ||||||| Sbjct 292 ACGCGCAGCCCCA 280 >seq7520 Length=222 Score = 87.8 bits (96), Expect = 6e-13 Identities = 83/105 (79%), Gaps = 2/105 (2%) Strand=Plus/Plus Query 11876 ACGCCGGCTCGATGGCCGGCGTTCGGGAGGATTTGCAGCAGTTGCTGCTCAGTGATAGGC 11935 |||||||| |||||||||||||||| || ||||||||||||||||| || |||||| Sbjct 70 ACGCCGGCATTGCGGCCGGCGTTCGGGAGTATCTGCAGCAGTTGCTGCTCGGTAATAGGC 129 Query 11936 ATTCTGATCTCCAGGCACAAAAAAGCCCGCAGAGT--GCGGGCTG 11978 || ||||||||| || ||||||||| | | |||||||| Sbjct 130 ATGGCTTTCTCCAGGCGTAATAAAGCCCGCTCAATTGGCGGGCTG 174 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 160405476071370