Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lipotes_20vexillifer_20[refseq_20GCF_5F000442215.1_202013-07-31] 30,713 sequences; 2,429,212,129 total letters Query= NC_030919.1 Length=42418 Score E Sequences producing significant alignments: (Bits) Value seq9203 358 2e-94 >seq9203 Length=13179 Score = 358 bits (396), Expect = 2e-94 Identities = 666/970 (69%), Gaps = 12/970 (1%) Strand=Plus/Minus Query 1799 TGTAAATTCTACCAATATATTCTCCAAGAATACCTATTCCTATCAATTGAACGCCACCCA 1858 |||| || | || |||||||| || || | ||| || ||||||||||||| |||||| | Sbjct 11488 TGTATATGCGCCCGATATATTCACCCAGCACACCAATACCTATCAATTGAATGCCACCAA 11429 Query 1859 GGAAAAGAACAGAAACAAGAAGAGACGGGTAGCCAGGAACATTATTTCCAAATATTAATT 1918 | || |||| || || || || || || || ||||| ||| ||| || | || | || Sbjct 11428 GAAACAGAATGGAGACGAGTAGCGATGGATAACCAGGCACAGCATTACCCCAGATAACTT 11369 Query 1919 TATCAATAATCATCCATGCACCGTAAAGGAATGA-CA--TACCTGCAATAAACAATCCAA 1975 ||||||| | ||| | ||| || | ||||| || || || | |||||| || | Sbjct 11368 TATCAATTACCATGAAGCTACCATACAAAAATGAGCAGGTA---GCCACAAACAACCCTA 11312 Query 1976 TGTAAGTCCATATGCGGAGCGGAAATGTTGAGAAAGAAGTTATTCCCTCCAGCGCCAGGT 2035 || ||||||| | || || | | ||| || |||||||| || | |||||| | Sbjct 11311 AATATGTCCATACTCTTAGAGGTACAGATGAAAAGCTGGTTATTCCTTCAATCGCCAGAT 11252 Query 2036 TCCATAATTTCCAGCCGTTGAATTTCGAATCACCGGCCACGCGTTCGGCACGGGCATATT 2095 |||||||||||||||| || || || ||||| || || | ||| || | | |||| Sbjct 11251 TCCATAATTTCCAGCCATTAAACTTTGAATCCCCAGCAGACCTTTCTGCTCTAGAGTATT 11192 Query 2096 TAACAACATCCGTTTTTCCGCCAACCCAACTGAGCACACCC--TTCATAAACAAGTTGCG 2153 ||| | || | ||||||| |||| ||| | | || ||||||||||| ||||| Sbjct 11191 CAACCAGTTCAATATTTCCGCTTGCCCA--TGACAATATCCCTTTCATAAACAAATTGCG 11134 Query 2154 TTCTGGCATTTGTTTGATGTTCTCGACAACCGCACGGCTCATTAACCGAAAGTCGCCAAC 2213 || |||| | || | || ||||| || | | ||||| || || || || || Sbjct 11133 CTCAGGCAGCAGCTTAACATTTTCGACTGCCTCTCTTGACATTAGTCGGAAATCACCTAC 11074 Query 2214 ATTTTCTTCGATTTTTGGATTGCTGATTTTATTGTG-CAGCTTATAAAACCACTCAGCTG 2272 ||| ||||| ||| | || | |||||||||||||| || || |||||||||||| |||| Sbjct 11073 ATTCTCTTCAATTCTCGGCGTACTGATTTTATTGTGGCATCT-ATAAAACCACTCGGCTG 11015 Query 2273 TCTTACGCTTCATGCGCCCGTCAGTTGAGCGGTCTGAGCGCTTAGCCAGCACCATATCCG 2332 | || | |||| | || | ||||| || | ||||| || | ||| | ||| | Sbjct 11014 TTTTCCTTTTCAACCAGTTTTCTTTAGAGCGATCAGTACGCTTGGCTAACACTACATCAG 10955 Query 2333 CGCCAGCCTGCCACTTCTCAATGAGATGAGGGATAACTTCTATCGGATCCTGTAAATCGA 2392 | || |||||| || ||| || | || || ||||| || |||||||| | ||| | Sbjct 10954 CCCCTAACTGCCATTTTCTAATAAGCTCTGGAATTACTTCAATGGGATCCTGAAGATCTA 10895 Query 2393 CATCAATAGGAATGACCGCATCCCCGGTTGCATGGTCGAGACCCGCGAAAAGAGCAGGTT 2452 ||||||| ||||| || ||||| || || |||| || | ||| || || || || || | Sbjct 10894 CATCAATTGGAATTACAGCATCTCCAGTCGCATATTCTATACCAGCAAATAGCGCTGGCT 10835 Query 2453 CTTTACCGAAGTTTCGCGTAAACGAAAGCGGAATAACGAGCGGATCAGATGCAGCTATTT 2512 |||||||||| ||||| || || |||| || || || ||| | | || || Sbjct 10834 CTTTACCGAAATTTCGGGTGAAGCTTAGCGCCATCACTAGACAATCTGCAGTCGCATATT 10775 Query 2513 TGTTAATTATTGATTCAGTCGCATCTTTACTACCATCATTAATAAAAACGATCTCAATTT 2572 | ||||| || | || || ||||| | |||||| ||||| || || | || || | || Sbjct 10774 TATTAATAATCAACTCTGTTGCATCGTGACTACCGTCATTTATGAAGATTATTTCTACTT 10715 Query 2573 CATATTCTTTTAGCTCATTAAACTCACGTACCGTTTTATAGAAAATCGGTATCGTGTCTT 2632 |||| || | | ||| || ||||| || | ||||||||| || ||||| | |||| Sbjct 10714 CATACTCGCTCAACTCTTTGTTTTCACGAACGGCTTTATAGAAGATAGGTATTGCATCTT 10655 Query 2633 CTTCGTTAAAAACTGGAACGACAAGAGAGATTTTCATCTTATATCCCTGAAAACAATGAA 2692 |||| || ||||| || || || | || |||||||| || |||| | |||||||| | Sbjct 10654 CTTCATTGAAAACAGGTACAACCAATGATATTTTCATTTTTTATCTTTAAAAACAATCAG 10595 Query 2693 TCTGGAATAGATAAAGCCGCATACCAGGCTAATTGCCGAGAAAGTGATAAGGGTAATCAA 2752 | | || || | || || | || ||||||||| || || || || || || | | Sbjct 10594 TTTTGAGTAAAAGAATCCCACAATCAAGCTAATTGCAGAAAATGTTATCAGCGTTAAAAT 10535 Query 2753 TGGTGGCAAG 2762 ||| | |||| Sbjct 10534 TGGCGTCAAG 10525 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 135566538556280