Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lipotes_20vexillifer_20[refseq_20GCF_5F000442215.1_202013-07-31] 30,713 sequences; 2,429,212,129 total letters Query= NC_030929.1 Length=49033 Score E Sequences producing significant alignments: (Bits) Value seq5804 343 5e-90 seq20693 260 4e-65 seq18817 205 3e-48 seq7971 138 4e-28 seq7154 116 1e-21 seq30539 100 9e-17 seq15500 84.2 7e-12 seq21567 80.6 8e-11 seq7520 80.6 8e-11 >seq5804 Length=1936 Score = 343 bits (380), Expect = 5e-90 Identities = 612/888 (69%), Gaps = 4/888 (0%) Strand=Plus/Minus Query 7046 AATGAAGACCACGCCCACCTACAAGACGCTCCTCTCGCTTTCCTATGGGCTGCCTCCAGC 7105 || |||||||| |||||||||| || || || || | ||||| | || ||| Sbjct 1186 AACGAAGACCATGCCCACCTACTGGATGCAGACATCCGGGTCATGTGGGCGTCGTCGAGC 1127 Query 7106 TTCACCAAGCAGGGGAGGACGGTACTGGGTCAGTGCGAAGAGGTGACGTTCCGCTGTGGA 7165 ||| |||||||||| | || || ||||| ||| ||| |||| |||||||| || Sbjct 1126 TTCGCCAAGCAGGGCCGCACAGTCCTGGGGCAGGCCGAGCAGGTAGCGTTCCGCGCCGGT 1067 Query 7166 GCCTGGCAGAAGGGTAGGCAGGAACAGCAGATGATCCGTTGGTTCGGATACCTGCCGAGG 7225 | ||||||||||| || ||| || |||||| ||||||||| ||||| Sbjct 1066 GGCTGGCAGAAGGCCCGGATGGAGCAACAGATGCGTGATTGGTTCGGTGGTGTGCCGGCC 1007 Query 7226 TTTCTGATCACCCTGGCTGCTGACTACTGCTCCCAGTGCTCCGACGCGGAGTTCTGCGCA 7285 || | |||||||||||||||||||||||| |||||||| |||| | || ||||| || Sbjct 1006 TTCATCATCACCCTGGCTGCTGACTACTGCGCCCAGTGCAGCGACACCGACTTCTGTGCC 947 Query 7286 TTGGTCGAGCATGAGCTCTACCACATCTGCCAAGAGCAC-AACCAATATGGCGAGCCCAA 7344 |||| ||||||||||| ||||||||| || | ||| | |||| ||| |||| Sbjct 946 CTGGTAGAGCATGAGCTGTACCACATC-GCACACGCCACGGATAAATACGGCCAGCCAGC 888 Query 7345 GTTCACCGAGGAGGGCTTTCCAAAGCTGAAGCTCCGCGGGCATGACGTCGAGGAGTTCGT 7404 || ||| ||||||| || |||||| || | || || || || |||||||||||||| Sbjct 887 CTTTACCAAGGAGGGAGCGCCGAAGCTGGAGATGCGTGGTCACGATGTCGAGGAGTTCGT 828 Query 7405 CGGCGTGGTGAGGCGGTACGGCCCAAGCAAGGACGTGCAGTATCTCATCGACGCTGCTAG 7464 ||| ||||| | || ||||| | ||| ||||| || | | || || || | Sbjct 827 CGGTGTGGTACGCCGCTACGGTGCGAGCCCTGACGTTCAAGCGTTGGTGGATGCAGCAAA 768 Query 7465 CAGGCCTCCAGAGGTGGCCAAAATTAACATTTCGAGAGCCTGCGGTACGTGCCTGCTGAA 7524 || || | ||||||| ||| | ||||| ||||| || ||||| || || ||||| || Sbjct 767 CAAACCCGCCGAGGTGGGGAAACTGAACATATCGAGGGCTTGCGGAACCTGTCTGCTCAA 708 Query 7525 GTCGGCAT-AGCCACGACAGGCCCATGACAGGAAGAAAAACGATGGCAACCCTGAACAGC 7583 | ||| | | | ||||||| | ||| ||| || || | |||||| |||| | | Sbjct 707 GCTGGCCTGATTCTGGACAGGCTCTGGAC-GGATGAGAATCTATGGCAGCCCTTCAAAAT 649 Query 7584 GACGTGAAGGCGTTCATCGTTCAGGCGCTGGCCTGTTTCGATACGCCATCCCAGGTTGCG 7643 ||||||||||| || || |||||||| ||||| || ||||| ||||| || ||||| | Sbjct 648 GACGTGAAGGCCTTTATTGTTCAGGCCCTGGCGTGCTTCGACACGCCTTCACAGGTCGTT 589 Query 7644 GAATCGGTCAAGAAGGAATTCGGCATCGAGGTCAGTCGGCAGCAGATCGAGTCGCACGAC 7703 ||| | ||| |||| |||| || | | ||| | || |||||| | || | || || Sbjct 588 GAAGCTGTCCAGAAAGAATATGGGGTTGTGGTAACCCGCCAGCAGGTGGAAACACATGAT 529 Query 7704 CCGAACAAGGTGTGCAGCAAGGGCCTTGCCGCGAAGTGGCGGATCCTCTTCGAGGACACC 7763 || | ||| | | || ||||| || | ||| || | ||||| || ||| Sbjct 528 CCTACGAAGACATCGGGTAAAGGCCTGGCAAAGCGCTGGGTGACGATGTTCGAAGATACC 469 Query 7764 CGCAAGCGCTTCCGCGAGGAGATCGCCGACATCCCGATCGCCAACCGCGCCTACCGACTG 7823 || ||||| || ||||| |||| || || |||||||| ||||||||||||| ||| || Sbjct 468 CGGAAGCGGTTTCGCGAAGAGACAGCTGATATCCCGATTGCCAACCGCGCCTTCCGCCTT 409 Query 7824 AGGGCATTGGGTCGGATGGCTGAGCGCGCCGAGGGCATGCGAAACATGGCCCTGGCTGCC 7883 | || || || | | ||| | || ||| ||| ||||| | |||||| Sbjct 408 CGTGCCATGAACCGTTTCGTGGAGAGGGCTGAGTCGATGAAGAACATCGGCCTGGCCATG 349 Query 7884 CAGCTTTACGAGCAGGCCGCCAAGGAGTCGGGTGGCATGTACAGCAAC 7931 ||| | |||||| ||||| || || | |||| ||| ||| |||| Sbjct 348 CAGATCCTCGAGCAAGCCGCGAAAGAAACCGGTGACATTTACGTCAAC 301 >seq20693 Length=30642 Score = 260 bits (288), Expect = 4e-65 Identities = 293/389 (75%), Gaps = 5/389 (1%) Strand=Plus/Plus Query 33002 CGCATGGTGATGTTAGCTGTAGATATCAAGGCATTGTCCTGCGGGGCTTTGCGGGATGG- 33060 |||||||||||||| ||||| || |||||| ||||||||||||| || | | || Sbjct 8305 CGCATGGTGATGTTTGCTGTGGAGATCAAGTGCTTGTCCTGCGGGGGTTCCAGAGGTGTA 8364 Query 33061 -TTACGCGCCTTCCTCTGCTTCCTGTACCAATTCCGTACCAGTTTTAACCCTGGTCTGTA 33119 ||| || | || || | | ||| |||||| | ||| ||| || | || | | | Sbjct 8365 TTTAGGCCCTCTCGTCAGTT--CTGGGCCAATTTTGGGCCA-TTTCGACTCGGGGCGGCA 8421 Query 33120 GCTTCTCCAACTCGCTCCAATCCGAGGCGGAGTTCAGCCACTTGGCATAGGTCGATAGCA 33179 ||||||||| ||| ||||| ||| ||| |||| | | ||| || || ||||| || ||| Sbjct 8422 GCTTCTCCAGCTCCCTCCAGTCCAAGGAGGAGCTGATCCATTTCGCGTAGGTAGAGAGCT 8481 Query 33180 GCATCTGCACGCTGTGGCCTAGCTGTCCAGCGATAAACGCAGGGTTCATGCCAGCCATCA 33239 ||||| ||||||| ||| ||||| | ||||| ||||| |||||||| |||| ||||| Sbjct 8482 ACATCTCGACGCTGTAGCCGAGCTGGCTCGCGATGAACGCGGGGTTCATCCCAGACATCA 8541 Query 33240 GGCACATGGTCGCGTATGTGTGGCGGGTGTCATACTGCCGGCGCCTTCGGATGGATAGAG 33299 |||||||||| ||||| |||||||||||||| ||||| ||||| |||||| || | Sbjct 8542 GGCACATGGTTGCGTAGGTGTGGCGGGTGTCGTACTGACGGCGTTCACGGATGTTCAGCG 8601 Query 33300 CATCAAGCGCGGCGTGGAAGTGCTTTATGGTAACACTTGGCTCCTTGATCCACAGCCCGC 33359 | | ||||| | | |||||| || |||||||||||||| |||||||||||||| | Sbjct 8602 CCTTCAGCGCCGATTTGAAGTGGCGGATTGTAACACTTGGCTCGTTGATCCACAGCCCAC 8661 Query 33360 CTTTGCTGGGCGGGAATACGAACGGGCTG 33388 ||||||| || |||| ||||| || ||| Sbjct 8662 CTTTGCTAGGTTGGAACACGAAGGGACTG 8690 >seq18817 Length=1047 Score = 205 bits (226), Expect = 3e-48 Identities = 250/341 (73%), Gaps = 0/341 (0%) Strand=Plus/Minus Query 47629 CCTGGGTGAGTTTGGCGTGCTTGCGCGCGGCCTTGATGCGGTCTTTGAGTTCCATCCGAA 47688 |||| |||| ||||||||| |||||| ||||| | || ||||||| |||||||| Sbjct 826 CCTGATTGAGCTTGGCGTGCCGGCGCGCTGCCTTTAAACGATCTTTGAATTCCATCCAGC 767 Query 47689 AAGTATCAGGGGCGTTCCCATATCCTTGCAAATGAGTATTCCCCTGGGATACCTTATGAG 47748 ||||| | ||| | |||||||||||||||||| |||||||| | ||| |||| | Sbjct 766 GAGTATTACGGGTGCTCCCATATCCTTGCAAATCGGTATTCCCATAACCTACTATATGGG 707 Query 47749 TATTCCCATAAGGAGGGATGCTATGACCACCATCTACAAAGAGCTCGTCGCCCATTTTGG 47808 ||||||| || |||||| |||| ||| || || || || ||||| ||| || || Sbjct 706 TATTCCCGTATGGAGGGGCAGCATGAACACTATTTATAAGGACCTCGTTGCCTTCTTCGG 647 Query 47809 GACTCAAGACGAGACCGCCGCGAAGCTCGGCGTTGACCAAAGCACTGTGTCTGGATGGGT 47868 ||||| || | ||||| | |||||| || || |||||||| || || || ||||| Sbjct 646 CACTCAGGAGGTCACCGCTGAAAAGCTCAAAGTCGATCAAAGCACCGTTTCCGGGTGGGT 587 Query 47869 CCGGGGAAAGCACGGGATGTCTCCTGTTGTTGCGAAGCGGGCTCAGGTTCTGACCGACGG 47928 |||| ||||||||| |||||||| || ||||| ||||| || ||| |||||| || Sbjct 586 TCGGGAAAAGCACGGAATGTCTCCAGTGGTTGCCAAGCGAGCGGAGGCGTTGACCGGAGG 527 Query 47929 GAAATTCAAGAAAGAGGACCTGTGTCCGGCTTTCCCGTGGG 47969 ||||| ||||| ||| |||||| | || || |||| Sbjct 526 CGCTTTCAAAAAAGAATCCCTTTGTCCGTCGTTTCCCTGGG 486 >seq7971 Length=25187 Score = 138 bits (152), Expect = 4e-28 Identities = 376/571 (66%), Gaps = 11/571 (2%) Strand=Plus/Plus Query 33774 TGATCAGACCGTCCTTCACAGCGGAATCTAGGATCGTCGACAGCTTGAACATCGCGTTTC 33833 ||||||| |||||| |||||| || ||||| ||||||||||| | ||| || || | Sbjct 5375 TGATCAGCCCGTCCAGCACAGCTGAGCGGAGGATTGTCGACAGCTTCACCATGGCATTGC 5434 Query 33834 GCTTCACGCCTGGCGACGTCCACTCGATGCTGCTGATGATTCGGCGCAAGAGGGTAGGGG 33893 | || ||| || ||| ||||| ||| | ||| ||| || | | || || || | Sbjct 5435 GTTTAACGGATGCCGATGTCCAGGTGATCGAGGTGACGATCCGCCTAAGAAGCGTGGGCG 5494 Query 33894 TGATCTGATCAAGCCGGGCTACTGCTAGATGTGGCATCCAGTATTGGTTGAGGATGCTCT 33953 ||||| |||| | || | | || || || |||| ||| || | || | | ||| | Sbjct 5495 TGATCAGATCTATACGTACCAAGGCGAGGTGGGGCACCCAATACAGATTCAAGGTGCCTT 5554 Query 33954 TGTAGTTCTTGCGTGTCCCAAGCACGATCTCTCGGCTGTCTAGCCAGAGTTGAGCATGCT 34013 ||||||| | || || | ||||||| |||||||| | ||| | |||||| | || Sbjct 5555 TGTAGTTGAGCCTCGTGCCCGCCGCGATCTCCCGGCTGTCCAACCACAATTGAGCGTACT 5614 Query 34014 CACCGAACAGGGGGATTTGGCTGCTGACCGATTCCGCAATCGCAGACCCGGGGAAGAACT 34073 | |||||| || | || | || || ||| | || | || |||| | Sbjct 5615 CGCCGAACGTTGGTAC---GCCACCCAC-GACAGCGC-----CGGAGCTAGGAAAGAGTT 5665 Query 34074 CTGCATACCGGGCTTCATCCATGATGCCCAGCTTGATT-GCCTGGACTACCTGATCTCTA 34132 | || ||| | | | || | | | || || || | ||| ||| | ||||| | Sbjct 5666 CCGCGTACTTGTCATGGTCGAGTAGGTTGAGTTTTATCAGGCTGTT-TACTTTATCTCGA 5724 Query 34133 AGACCGGATGCAGTCTTAATCCCTTTTTGCGTCGCGGGATAGGGGAGTGTTTCGCACTTC 34192 || |||||||| ||| || |||||||| |||||||||||||| || || || | | | Sbjct 5725 AGCTGGGATGCAGCCTTGATGCCTTTTTGTGTCGCGGGATAGGGAAGGGTCTCACTCCTG 5784 Query 34193 CTTGTTCCGTTCCACATGAAGCGGATACGGATAGAGTTGCCGATGACTTCCACCCCGGTG 34252 | | || | ||||||||| | || |||| ||| | | ||| || | || | | Sbjct 5785 CGAGCACCTTCCCACATGAACCTGAGCCGGAGCGAGCCGTAGTGGACGTCGATGCCAGGG 5844 Query 34253 GGCATACCCAAAGGCTTTCGAGCCATTCGTCGTATCTCCGTCGACTGTAGATTATTTTCC 34312 || | | ||| ||||||| ||||||||||| || ||| | |||||||| ||| | Sbjct 5845 GGTAAATCCATTGGCTTTCCAGCCATTCGTCATACCTCTTTTTGCTGTAGATAATTCGGC 5904 Query 34313 CGTTGACCTTGTTCCAGACGCCTTCTGGAAT 34343 || || ||| |||| ||||| || ||||| Sbjct 5905 CGCTGTGCTTCATCCATACGCCCTCGGGAAT 5935 Score = 91.5 bits (100), Expect = 5e-14 Identities = 127/178 (71%), Gaps = 0/178 (0%) Strand=Plus/Plus Query 33114 TCTGTAGCTTCTCCAACTCGCTCCAATCCGAGGCGGAGTTCAGCCACTTGGCATAGGTCG 33173 |||| ||||| |||| ||| ||| || || ||||| | ||| ||||| |||| Sbjct 4718 TCTGGAGCTTTTCCAGCTCCTGCCAGTCATTGGACGAGTTAATCCAACGTGCATAAGTCG 4777 Query 33174 ATAGCAGCATCTGCACGCTGTGGCCTAGCTGTCCAGCGATAAACGCAGGGTTCATGCCAG 33233 ||| |||||||||||||| || || |||||| ||||| || || ||||| | || | Sbjct 4778 ATAAGAGCATCTGCACGCTATGCCCGAGCTGTTGGGCGATGAATGCGGGGTTGAGACCGG 4837 Query 33234 CCATCAGGCACATGGTCGCGTATGTGTGGCGGGTGTCATACTGCCGGCGCCTTCGGAT 33291 ||| | ||| || ||||| || || |||||| || |||| | |||| |||||| Sbjct 4838 ACATTAAGCATATTGTCGCATAGGTATGGCGGCAGTTATACGGTGGGCGATATCGGAT 4895 >seq7154 Length=3927 Score = 116 bits (128), Expect = 1e-21 Identities = 90/107 (84%), Gaps = 0/107 (0%) Strand=Plus/Minus Query 33176 AGCAGCATCTGCACGCTGTGGCCTAGCTGTCCAGCGATAAACGCAGGGTTCATGCCAGCC 33235 ||||||| |||||||||||| || || || | ||||| || || ||||||||||| ||| Sbjct 652 AGCAGCACCTGCACGCTGTGCCCGAGTTGCGCGGCGATGAATGCCGGGTTCATGCCGGCC 593 Query 33236 ATCAGGCACATGGTCGCGTATGTGTGGCGGGTGTCATACTGCCGGCG 33282 | |||||||||||||||||| |||||||| ||||| ||| ||| ||| Sbjct 592 ACCAGGCACATGGTCGCGTACGTGTGGCGCGTGTCGTACAGCCTGCG 546 >seq30539 Length=7398 Score = 100 bits (110), Expect = 9e-17 Identities = 167/240 (70%), Gaps = 11/240 (5%) Strand=Plus/Minus Query 5352 GCAGTCGTCTCTGCCTTGGCGGCGGAAACCATCGACAACACTGCAAAGCAAGCCTGGCAG 5411 ||||| ||||| ||| | || || ||| ||||||||||||| |||||||| |||||| Sbjct 586 GCAGTTGTCTCGGCCCTCGCCGCCGAAGCCATCGACAACACCAGCAAGCAAGCATGGCAG 527 Query 5412 AAGCTCTACCAGCCAGGGTATGCCGAGAGTGAGGGTTTAGCTGGGCTGATCAGGGGCTCG 5471 ||||| ||| | | | | | || || | ||| | |||| | | || ||| Sbjct 526 AAGCTGTACAACTCGGCCGACGAGGA-AGAGGGGGGAGACCTGGC---AACTCTGGTTCG 471 Query 5472 AACACGTCAGGC-------ATCAAGCGCATCGATGCTGATTGCTGGGTGCACGCCCGGCT 5524 | | || ||| ||| | |||| | | ||||||||||| |||||||| Sbjct 470 ATCCCGCGGGGCTGACGCCATCGATCGCACGCAAGTGGATTGCTGGGTATCTGCCCGGCT 411 Query 5525 GCACAGTCAGCTCAAGCCTAGGCACTGGAACGCGCTTGTGGCGAAGTACAGCACCCACCG 5584 ||| || |||| |||| | ||||||| | ||||||||||||||||||||||| ||||| Sbjct 410 GCATAGCGCGCTCGAGCCGAAGCACTGGGATGCGCTTGTGGCGAAGTACAGCACGCACCG 351 >seq15500 Length=493 Score = 84.2 bits (92), Expect = 7e-12 Identities = 184/271 (68%), Gaps = 6/271 (2%) Strand=Plus/Plus Query 31688 GTACCGCGGGCGCGGGCTGCTGCAGATCACCGGCCGGGCGAACTACCGCGCCGCCGGCGA 31747 ||| ||||||||||||||| | ||| ||||||| || || ||||| ||| |||||| Sbjct 193 GTATCGCGGGCGCGGGCTGATCCAGGTCACCGGGCGCGCCAACTATGCCGCGTGCGGCGA 252 Query 31748 CGGGCTGGGCC-AGCCGCTG--GAGCAGGAACCCGAGCTTCTCGAGCAACCGGAGTGGGC 31804 | || |||| || | ||| | |||| || || | || ||| || || || Sbjct 253 GGCCCTTGGCCTAGAC-CTGATCAACAGG--CCTGAATTGCTTGAGATGCCCCAGAACGC 309 Query 31805 GGCGATCTCGGCGGCCTGGTGGTGGGCCAGTCACGGCTTGAACGACCTGGCCGACCGCGG 31864 || || || |||||||||| ||| | | | | ||| ||||| ||||| || | || Sbjct 310 CGCTATGTCAGCGGCCTGGTTCTGGTCGACTAAGGGCCTGAACACGCTGGCGGATCAGGG 369 Query 31865 CGAGTTCGCCGCCATCACTCGGCGCATCAACGGCGGCACGAACGGCCAGGCGGAGCGCCT 31924 |||||| ||||| ||||||||| || || | ||| ||||| || |||| Sbjct 370 TCAGTTCGAGAAGATCACCAAGCGCATCAATGGTGGGCTCACCGGACAGGCCGACCGCCA 429 Query 31925 GGCGCTGTGGGAGCGGGCGAAGAGGGTGCTG 31955 |||||||| || |||| || ||||||| Sbjct 430 GGCGCTGTACGACAAGGCGCTGAAGGTGCTG 460 >seq21567 Length=1250 Score = 80.6 bits (88), Expect = 8e-11 Identities = 83/109 (76%), Gaps = 0/109 (0%) Strand=Plus/Plus Query 4556 GCGCGGAAGGCTATCGCCGACCGAGAGCGGCGGGAGATCAAGGTTCGGAAGGAGAGGCTG 4615 || || ||||| | |||||| ||||| || |||||||| || ||||||| |||| Sbjct 1117 GCCCGCAAGGCCCTGGCCGACATCGAGCGCAAAGATATCAAGGTCCGCAAGGAGAAGCTG 1176 Query 4616 AAGAGTAAGGCGGATCACCTGCGCGAGGCTCAGCAGGCATTCAACGAAT 4664 ||||||| |||||| ||||| || | |||||||||||||||| || Sbjct 1177 AAGAGTAGGGCGGACCACCTCAAAGACACGCAGCAGGCATTCAACGCAT 1225 >seq7520 Length=222 Score = 80.6 bits (88), Expect = 8e-11 Identities = 75/93 (81%), Gaps = 2/93 (2%) Strand=Plus/Minus Query 31331 CATGCCCATCACTGAGCAGCAGTTGCTGCATATCCTCCCGAACGCCGGCTCGAGGGCCGG 31390 |||||| || || |||||||| ||||||| || ||||||||||||||| | ||||| Sbjct 132 CATGCCTATTACCGAGCAGCAACTGCTGCAGATACTCCCGAACGCCGGCCGCAATGCCGG 73 Query 31391 CGTTTTTGTTGGTGCGCTGAACCGCGG-GATGA 31422 |||||||||| || |||||| |||| ||||| Sbjct 72 CGTTTTTGTTCCTGTGCTGAA-TGCGGCGATGA 41 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 156726818229470