Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lipotes_20vexillifer_20[refseq_20GCF_5F000442215.1_202013-07-31] 30,713 sequences; 2,429,212,129 total letters Query= NC_030940.1 Length=32637 Score E Sequences producing significant alignments: (Bits) Value seq13800 194 4e-45 seq17834 147 5e-31 seq8615 95.1 3e-15 seq18487 93.3 9e-15 >seq13800 Length=12474 Score = 194 bits (214), Expect = 4e-45 Identities = 115/120 (96%), Gaps = 0/120 (0%) Strand=Plus/Plus Query 2850 CTGGGGGCCTATAGCTCAGTCGGTTAGAGCAGAGGACTCATAATCCTTTGGTCCACGGTT 2909 ||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 8287 CTGAGGGCCTATAGCTCAGTTGGTTAGAGCAGAGGACTCATAATCCTTTGGTCCACGGTT 8346 Query 2910 CGAGTCCGTGTGGGCCCACCACCTTCAAAGCCGCGCACTGCGCGGCTTTCGCCTTTCTGG 2969 ||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||| Sbjct 8347 CGAGTCCGTGTGGGCCCACCATATTCAAAGCCGCGCACTGCGCGGCTTTCGGCTTTCTGG 8406 >seq17834 Length=378 Score = 147 bits (162), Expect = 5e-31 Identities = 105/121 (87%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 2850 CTGGGGGCCTATAGCTCAGTCGGTTAGAGCAGAGGACTCATAATCCTTTGGTCCACGGTT 2909 ||| |||||||||||||||| ||||||||||| ||||||||||||| |||||| |||| Sbjct 156 CTGAGGGCCTATAGCTCAGTTGGTTAGAGCAGGGGACTCATAATCCCTTGGTCGTAGGTT 97 Query 2910 CGAGTCCGTGTGGGCCCACCACCTTCAAAGCCGCGCACTGCGCGGCTTTCGCCTTTCTGG 2969 ||||||| |||||||||||| ||||||||||||| ||||||||||| || | ||||| Sbjct 96 CGAGTCCTACTGGGCCCACCACACTCAAAGCCGCGCATTGCGCGGCTTTTGCGTATCTGG 37 Query 2970 C 2970 | Sbjct 36 C 36 >seq8615 Length=1762 Score = 95.1 bits (104), Expect = 3e-15 Identities = 67/77 (87%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 2854 GGGCCTATAGCTCAGTCGGTTAGAGCAGAGGACTCATAATCCTTTGGTCCACGGTTCGAG 2913 |||||||||||||||| ||||||||||| ||||||||||||| ||||||| |||| || Sbjct 371 GGGCCTATAGCTCAGTTGGTTAGAGCAGCGGACTCATAATCCGTTGGTCCCGTGTTCAAG 430 Query 2914 TCCGTGTGGGCCCACCA 2930 || |||||||||||| Sbjct 431 TCACGGTGGGCCCACCA 447 >seq18487 Length=4867 Score = 93.3 bits (102), Expect = 9e-15 Identities = 92/119 (77%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 9264 CCGTACCGCCGAAAAGTTCGTAGTGCGCCTACCTGACGGCATGCGCGATCGGGTCGCGGA 9323 ||| || || || |||||||| || ||||| || ||||| ||||| || || |||| || Sbjct 4480 CCGCACTGCTGACAAGTTCGTCGTTCGCCTGCCAGACGGGATGCGTGAGCGCATCGCCGA 4539 Query 9324 GACTGCGCGGGACAACCATCGCAGCATGAATTCGGAGATCATCGCCCGCTTGGAACAGA 9382 | || || || |||| ||||||||||| ||||||||||| || ||| |||| |||| Sbjct 4540 GGTAGCACGCAACCACCACCGCAGCATGAACTCGGAGATCATTGCACGCCTGGAGCAGA 4598 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 104278753902694