Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lipotes_20vexillifer_20[refseq_20GCF_5F000442215.1_202013-07-31] 30,713 sequences; 2,429,212,129 total letters Query= NC_031019.1 Length=41809 Score E Sequences producing significant alignments: (Bits) Value seq9203 358 2e-94 >seq9203 Length=13179 Score = 358 bits (396), Expect = 2e-94 Identities = 666/970 (69%), Gaps = 12/970 (1%) Strand=Plus/Minus Query 29135 TGTAAATTCTACCAATATATTCTCCAAGAATACCTATTCCTATCAATTGAACGCCACCCA 29194 |||| || | || |||||||| || || | ||| || ||||||||||||| |||||| | Sbjct 11488 TGTATATGCGCCCGATATATTCACCCAGCACACCAATACCTATCAATTGAATGCCACCAA 11429 Query 29195 GGAAAAGAACAGAAACAAGAAGAGACGGGTAGCCAGGAACATTATTTCCAAATATTAATT 29254 | || |||| || || || || || || || ||||| ||| ||| || | || | || Sbjct 11428 GAAACAGAATGGAGACGAGTAGCGATGGATAACCAGGCACAGCATTACCCCAGATAACTT 11369 Query 29255 TATCAATAATCATCCATGCACCGTAAAGGAATGA-CA--TACCTGCAATAAACAATCCAA 29311 ||||||| | ||| | ||| || | ||||| || || || | |||||| || | Sbjct 11368 TATCAATTACCATGAAGCTACCATACAAAAATGAGCAGGTA---GCCACAAACAACCCTA 11312 Query 29312 TGTAAGTCCATATGCGGAGCGGAAATGTTGAGAAAGAAGTTATTCCCTCCAGCGCCAGGT 29371 || ||||||| | || || | | ||| || |||||||| || | |||||| | Sbjct 11311 AATATGTCCATACTCTTAGAGGTACAGATGAAAAGCTGGTTATTCCTTCAATCGCCAGAT 11252 Query 29372 TCCATAATTTCCAGCCGTTGAATTTCGAATCACCGGCCACGCGTTCGGCACGGGCATATT 29431 |||||||||||||||| || || || ||||| || || | ||| || | | |||| Sbjct 11251 TCCATAATTTCCAGCCATTAAACTTTGAATCCCCAGCAGACCTTTCTGCTCTAGAGTATT 11192 Query 29432 TAACAACATCCGTTTTTCCGCCAACCCAACTGAGCACACCC--TTCATAAACAAGTTGCG 29489 ||| | || | ||||||| |||| ||| | | || ||||||||||| ||||| Sbjct 11191 CAACCAGTTCAATATTTCCGCTTGCCCA--TGACAATATCCCTTTCATAAACAAATTGCG 11134 Query 29490 TTCTGGCATTTGTTTGATGTTCTCGACAACCGCACGGCTCATTAACCGAAAGTCGCCAAC 29549 || |||| | || | || ||||| || | | ||||| || || || || || Sbjct 11133 CTCAGGCAGCAGCTTAACATTTTCGACTGCCTCTCTTGACATTAGTCGGAAATCACCTAC 11074 Query 29550 ATTTTCTTCGATTTTTGGATTGCTGATTTTATTGTG-CAGCTTATAAAACCACTCAGCTG 29608 ||| ||||| ||| | || | |||||||||||||| || || |||||||||||| |||| Sbjct 11073 ATTCTCTTCAATTCTCGGCGTACTGATTTTATTGTGGCATCT-ATAAAACCACTCGGCTG 11015 Query 29609 TCTTACGCTTCATGCGCCCGTCAGTTGAGCGGTCTGAGCGCTTAGCCAGCACCATATCCG 29668 | || | |||| | || | ||||| || | ||||| || | ||| | ||| | Sbjct 11014 TTTTCCTTTTCAACCAGTTTTCTTTAGAGCGATCAGTACGCTTGGCTAACACTACATCAG 10955 Query 29669 CGCCAGCCTGCCACTTCTCAATGAGATGAGGGATAACTTCTATCGGATCCTGTAAATCGA 29728 | || |||||| || ||| || | || || ||||| || |||||||| | ||| | Sbjct 10954 CCCCTAACTGCCATTTTCTAATAAGCTCTGGAATTACTTCAATGGGATCCTGAAGATCTA 10895 Query 29729 CATCAATAGGAATGACCGCATCCCCGGTTGCATGGTCGAGACCCGCGAAAAGAGCAGGTT 29788 ||||||| ||||| || ||||| || || |||| || | ||| || || || || || | Sbjct 10894 CATCAATTGGAATTACAGCATCTCCAGTCGCATATTCTATACCAGCAAATAGCGCTGGCT 10835 Query 29789 CTTTACCGAAGTTTCGCGTAAACGAAAGCGGAATAACGAGCGGATCAGATGCAGCTATTT 29848 |||||||||| ||||| || || |||| || || || ||| | | || || Sbjct 10834 CTTTACCGAAATTTCGGGTGAAGCTTAGCGCCATCACTAGACAATCTGCAGTCGCATATT 10775 Query 29849 TGTTAATTATTGATTCAGTCGCATCTTTACTACCATCATTAATAAAAACGATCTCAATTT 29908 | ||||| || | || || ||||| | |||||| ||||| || || | || || | || Sbjct 10774 TATTAATAATCAACTCTGTTGCATCGTGACTACCGTCATTTATGAAGATTATTTCTACTT 10715 Query 29909 CATATTCTTTTAGCTCATTAAACTCACGTACCGTTTTATAGAAAATCGGTATCGTGTCTT 29968 |||| || | | ||| || ||||| || | ||||||||| || ||||| | |||| Sbjct 10714 CATACTCGCTCAACTCTTTGTTTTCACGAACGGCTTTATAGAAGATAGGTATTGCATCTT 10655 Query 29969 CTTCGTTAAAAACTGGAACGACAAGAGAGATTTTCATCTTATATCCCTGAAAACAATGAA 30028 |||| || ||||| || || || | || |||||||| || |||| | |||||||| | Sbjct 10654 CTTCATTGAAAACAGGTACAACCAATGATATTTTCATTTTTTATCTTTAAAAACAATCAG 10595 Query 30029 TCTGGAATAGATAAAGCCGCATACCAGGCTAATTGCCGAGAAAGTGATAAGGGTAATCAA 30088 | | || || | || || | || ||||||||| || || || || || || | | Sbjct 10594 TTTTGAGTAAAAGAATCCCACAATCAAGCTAATTGCAGAAAATGTTATCAGCGTTAAAAT 10535 Query 30089 TGGTGGCAAG 30098 ||| | |||| Sbjct 10534 TGGCGTCAAG 10525 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 133618449316526