Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lipotes_20vexillifer_20[refseq_20GCF_5F000442215.1_202013-07-31] 30,713 sequences; 2,429,212,129 total letters Query= NC_031021.1 Length=41224 Score E Sequences producing significant alignments: (Bits) Value seq698 661 0.0 >seq698 Length=3433 Score = 661 bits (732), Expect = 0.0 Identities = 775/1043 (74%), Gaps = 6/1043 (1%) Strand=Plus/Plus Query 39229 ACGCCAGTTACCAGGAACGCAATTGGCACATGCTTACGGTCGACTACACGGTTCCAGTTG 39288 || ||||| |||||||| || || || | ||||| || || | || |||||||||||| Sbjct 191 ACACCAGTAACCAGGAAGGCGATCGGGATGTGCTTGCGCTCCATCACGCGGTTCCAGTTG 250 Query 39289 GCGGCGTTAGCCAGGTCCTGCCAGCTAGCGGAGCGGGCGGTAGTCTCGGTGCCGTTGCCG 39348 | ||| ||||| ||||||||| || ||||| | || |||||||||||||||||| Sbjct 251 GTGGCCAGCGCCAGATCCTGCCAGGAGGCAGAGCGCGGCGTGGTCTCGGTGCCGTTGCCG 310 Query 39349 GTGATTACAGCGCTGGTGAAGCTGTAACCAAACGGATGCAGCAACCACGTTTTACGAGTC 39408 ||||| || ||| ||||| || | ||| ||||||| ||| || || || || Sbjct 311 GTGATGGTGGCCGACAGGAAACTGTAGCCGAGCGGGTGCAGCAGCCAGGTCTTGCGGCTC 370 Query 39409 CACAGGGTTTCAACACCACCACCATTAGCACGAGATGCTTCACGTTCGTATTCCAGCGGC 39468 ||||| |||||| || ||||| ||| | |||| ||| || ||||| | || Sbjct 371 CACAGCACTTCAACGCCGCCACCGTTACCGCGAGCCTCTTGGCGCTCGTAGGCGGTTGGA 430 Query 39469 ATCTCAGGATTGCCTTCGCCGTAACCGATAGCACCCTGGCCGAAGATGATGGAGATGAAT 39528 |||||| |||||| |||||||||||||||||||| || ||||| | | |||||| Sbjct 431 TGCTCAGGGGAGCCTTCACCGTAACCGATAGCACCCTGACCAAAGATCACGCTGATGAAC 490 Query 39529 TTACGGCTAGTGTCCTGA-CCAACTACGGTCATGCTGTCATCGACGATGACGCGGTAACC 39587 || || | || || | || | |||||||| |||||||| | | |||||| || Sbjct 491 TTGCG-CGAGCTGCCGGTGCCGATCACGGTCATCTGGTCATCGATCACCAGGCGGTAGCC 549 Query 39588 CTGGTAGGTGGCGAACATGGTGTTGTTCTCAGCATCACGGATGAAGTCGATAAGCTGGGC 39647 ||||||||| |||| | ||||||||| ||||| ||||||||||||||||| | ||| Sbjct 550 CTGGTAGGTCGCGATCTGGGTGTTGTTGTCAGCGTCACGGATGAAGTCGATCATCTGCTT 609 Query 39648 TTTACGGGCCTGT--GCGTATACGAAGCTGTGCATTGCGATAGCACCGAGAACCTCACCG 39705 |||| || ||| | || |||||||| |||| || || | ||||| |||| ||| Sbjct 610 CTTAC--GCATGTCGCCATACACGAAGCTATGCACCGCCATGACGCCGAGCACCTGGCCG 667 Query 39706 CCGTTGCCCATCAATGCATCACCCATAGTCTGGGTAGCATCGATGAATGCACCTGCGTCG 39765 || | |||||||| ||||||||||| |||||||| || |||||||| || || || ||| Sbjct 668 CCAGTCCCCATCAACGCATCACCCATGGTCTGGGTCGCGTCGATGAAGGCGCCCGCATCG 727 Query 39766 AAGCCTGAAGTTGCAGAAACGTCAACAACCATGTCGTTCTGCTCGTGATACGCATCAGTA 39825 || || || || |||||||| | |||||||||||||| || |||||||||| Sbjct 728 AAACCGCCAGCAGCGGAAACGTCGATCACCATGTCGTTCTGGGTATGGAACGCATCAGTT 787 Query 39826 GCGGATACGTTGTCGTTGTACAGGCCGAGTGCAGTTGCAATAAGGCGACGCTGCGCCTGA 39885 ||| | |||||||||||| | || || | || || | || || ||||| ||||| Sbjct 788 GCGCCGATGTTGTCGTTGTAGATACCCAGAGAGGTGGCCAACAGCCGGCGCTGAGCCTGG 847 Query 39886 CGCTGCCAGAAGTTATCCAGACGGGATGCGACGGACTGCAACGGATTCTGGCTGGTAAGT 39945 |||||||||||||| ||||| || | || ||||| |||| ||| |||| |||||| || Sbjct 848 CGCTGCCAGAAGTTGTCCAGGCGAGCAGCAACGGATTGCAGCGGGTTCTTGCTGGTCAGC 907 Query 39946 TCTACAGTCAGGTCTGCCTGGCCGAAACCTTCGTTCAGATATGCAACGCGGGCCATCATT 40005 || ||||||||||| |||||||| ||||||||||| || || ||||| ||||||| ||| Sbjct 908 TCGACAGTCAGGTCGGCCTGGCCAAAACCTTCGTTGAGGTACGCAACACGGGCCAGCATA 967 Query 40006 TCACCGGTCTGAATAGCGCGCGGGGTCGCGATGTCCTGGTATACGTCATTCGAGTAGTTA 40065 || ||||| | ||| |||||| || | ||| ||| || || ||||||||||| Sbjct 968 TCGCCGGTTTCAATGTTGCGCGGCTCTGCCACGTCGGCGTACACATCGTTCGAGTAGTTC 1027 Query 40066 GGCTCGATAGAAGTATCGATAGCTTTCCAGAACGGCAGGTTAGCGATGTTAGACGGTCCG 40125 ||||||| || | ||||| | |||||| |||| | ||| |||||||| ||||| ||| Sbjct 1028 GGCTCGACGGATGCGTCGATCGACTTCCAGTACGGGATGTTCGCGATGTTCGACGGGCCG 1087 Query 40126 CGGGCAATCTCGGCAGCATACGGAGTTGGGGTCAAAATTCCGGAGTTGAAAAACGCGGTT 40185 || || ||||| ||||| ||||| |||||||| | ||| ||||| | ||| |||||||| Sbjct 1088 CGTGCGATCTCAGCAGCGTACGGGGTTGGGGTGAGAATGCCGGACTCGAAGAACGCGGTC 1147 Query 40186 TTCTCTACCGGGTCTTCCGTCATATAGGACGCCAGTACAGGGATATTGCCAGTTACGATG 40245 || || |||||||||| |||| || || | ||| || ||||| || || || | ||| Sbjct 1148 TTTTCAACCGGGTCTTGGGTCAGGTACGAGGTCAGCACCGGGATGTTACCGGTGATGATA 1207 Query 40246 TTACCAATAGTGGTGATTGCCAT 40268 ||||| || |||||||| | ||| Sbjct 1208 TTACCGATCGTGGTGATAGGCAT 1230 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 131747132066516