Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Lipotes_20vexillifer_20[refseq_20GCF_5F000442215.1_202013-07-31]
30,713 sequences; 2,429,212,129 total letters
Query= NC_031033.1
Length=217124
Score E
Sequences producing significant alignments: (Bits) Value
seq23530 183 4e-41
seq20687 132 7e-26
seq12120 123 3e-23
seq15277 120 4e-22
seq5470 93.3 6e-14
>seq23530
Length=2024980
Score = 183 bits (202), Expect = 4e-41
Identities = 277/393 (70%), Gaps = 1/393 (0%)
Strand=Plus/Plus
Query 48330 GCCCAATCAGCCTT-CTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGAGAAAGtt 48388
|||||||| ||||| |||||||||||||||| |||| || | || || ||||| || |
Sbjct 954646 GCCCAATCTGCCTTTCTTCTTTACACAAGGCGTTGTCTCAACGGCGTTGAAGAGGAATTC 954705
Query 48389 tttttCATTGCTATCTTTAACGTAAGTATCTATTAAAAGACTATACATTTCGGAGTGAAT 48448
|||| ||| |||||||| |||||| || | | ||||| |||||||| || || ||
Sbjct 954706 CCTTTCTTTGGAATCTTTAATGTAAGTGTCAGTGAGGAGACTGTACATTTCAGAATGTAT 954765
Query 48449 ATTTTCAATTGCCATCTGAAATCCGTAAAAACATCTCGCTTCTGTGATCTGTACCTCCGT 48508
||||| || || || || || || || || | | ||||| || ||||| || ||
Sbjct 954766 GTTTTCCATGGCAATTTGGAAGCCATAGAAGTAACGGGCTTCCGTAATCTGAACTTCTTG 954825
Query 48509 ACAAAATCGTTCAGCCAAATTCTCATTTACTATTCCATCACTAGCAGCAAAAAATGCTAA 48568
| || || || |||| || ||||||||||| |||||||| || ||| | || || |
Sbjct 954826 GCTAAGCCGCTCCACCAAGTTTTCATTTACTATGCCATCACTTGCTGCAGAGAAAGCCAG 954885
Query 48569 TACATGTTTAATAAAATATTTTTCGTTGGAAGTCAGTTTATTCCAGTCATTGATATCTTT 48628
||| || | | |||||| | || | | |||| | ||||| | || || ||
Sbjct 954886 AACACGTGAAGTGAAATATCTCTCCTCAGGCTTCAGGGCTTCCCAGTGCTGAATGTCCTT 954945
Query 48629 TGATATATCTACTTCTTCAGCTGTCCAAAATGATGCCTCTGCTTTTTTATACATATTCCA 48688
|| | || || || ||||||||||| || || ||||| ||||| |||||| | |||
Sbjct 954946 GGAAAGGTCCACCTCCTCAGCTGTCCAGAAGGAAGCCTCCGCTTTCCTATACACCTGCCA 955005
Query 48689 TATATCACTGTATTGGATTGGGAAAATAACAAA 48721
| ||||| ||||| || || || || |||||
Sbjct 955006 AACATCACGGTATTCCATAGGAAAGATGACAAA 955038
>seq20687
Length=1308170
Score = 132 bits (146), Expect = 7e-26
Identities = 109/133 (82%), Gaps = 0/133 (0%)
Strand=Plus/Minus
Query 77127 TGAAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTATATGGTTCCACAGAT 77186
||||||||||| ||||| ||||| |||||||| || ||||||||||| ||||| | ||
Sbjct 999335 TGAAATTCTCCTGACAAGACTCTGCGAGTGTAGATGTTACTGGTATAAGGTTCAATTGAC 999276
Query 77187 TCATTGTTTCCCAAAATTTGAGCAGTAGAAGCAGTTGGCATAGGTGCCACCAATAAACTA 77246
||||| |||||||| || |||||||| |||||||| ||||| || || | | ||||||
Sbjct 999275 TCATTATTTCCCAATATCTGAGCAGTTGAAGCAGTAGGCATCGGGGCAATGAGTAAACTG 999216
Query 77247 TTTCTGAGACCAT 77259
||||| | |||||
Sbjct 999215 TTTCTTACACCAT 999203
Score = 129 bits (142), Expect = 8e-25
Identities = 131/171 (77%), Gaps = 0/171 (0%)
Strand=Plus/Minus
Query 76849 TCCATCCGTAGAAATGCATGCTTGTCAGTTTGGAATAACTAGGATCGGCTATATGAATAT 76908
|||| |||||||| ||||| || || |||||| ||| |||| || || ||||| || |
Sbjct 1001579 TCCAGCCGTAGAAGTGCATACTAGTGAGTTTGCCATAGTTAGGCTCAGCAATATGTATGT 1001520
Query 76909 TCATCGACTGACTTTGATCGATGAAAGCTCCTCTATCAGCCGCCATTTTTATAATGGTCT 76968
||| ||||| |||||||| |||||||||||||| || || ||||| || | ||||| |
Sbjct 1001519 TCAAAGACTGGCTTTGATCAATGAAAGCTCCTCTCTCGGCTGCCATCTTGAGTATGGTTT 1001460
Query 76969 TTTGAGGAATTTCCCAAATAGTTTTGAAAACTTGTTTGATATCATCTGGAA 77019
| |||| |||||||| | ||| || ||| ||| || | ||||| ||||
Sbjct 1001459 TCTGAGAGATTTCCCACACAGTCTTATAAAGTTGCTTCAGGTCATCAGGAA 1001409
Score = 111 bits (122), Expect = 2e-19
Identities = 109/141 (77%), Gaps = 0/141 (0%)
Strand=Plus/Minus
Query 78399 GTTCCTGCATTAAATAATGTCGGAGATGCATGCGTAAACCATTTTTCAGAAAGTAGATTG 78458
|| || ||||| || | || ||||| |||||||||||||| | |||||||| || |||
Sbjct 981562 GTGCCAGCATTGAAGAGAGTGGGAGAGGCATGCGTAAACCACCTCTCAGAAAGAAGGTTG 981503
Query 78459 TATGTTTCAATAGCTGATTCTATGTCCCATTGATGAATTCCTACCGCTACACGCATCAAC 78518
|||||||||||||| | || || || || || || || || | ||| | |||||||
Sbjct 981502 TATGTTTCAATAGCAGCATCAATATCTTCTTTGTGGATGCCCACAGATACCCTCATCAAC 981443
Query 78519 ATATGCTGAGGTCTTTCAACC 78539
|||||||| ||||||||| ||
Sbjct 981442 ATATGCTGTGGTCTTTCAGCC 981422
Score = 89.7 bits (98), Expect = 7e-13
Identities = 109/149 (73%), Gaps = 0/149 (0%)
Strand=Plus/Minus
Query 78003 ACTCGTTTCATAAAGAGATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTATGT 78062
||||||||||| |||||||| || ||||| || |||| || || || | || | ||
Sbjct 989759 ACTCGTTTCATGAAGAGATCCGGAATCCAAAGGGCAAAGAAGAGGTCCCTGGCACGCTGC 989700
Query 78063 TCTTCATTTCCTGTATTCTTTTTAAGATCGAGAAACTCCATAATATCAGAATGCCATGGT 78122
||||| |||||||| ||||| || | ||| || ||||| | || || ||||||| ||
Sbjct 989699 TCTTCCTTTCCTGTGTTCTTCTTTAAATCAAGGAACTCAAAGATGTCTAAATGCCAAGGC 989640
Query 78123 TCTAGATATATTGCCATAACTCCAGGTCG 78151
|| || || || || | | ||||||||
Sbjct 989639 TCCAGGTAAATGGCAAATGCCCCAGGTCG 989611
>seq12120
Length=1614126
Score = 123 bits (136), Expect = 3e-23
Identities = 203/290 (70%), Gaps = 7/290 (2%)
Strand=Plus/Minus
Query 45876 TCCAGTGGATCCAAATCCT--TGAGCGTCTCTTTCAGTACCATCTAGAGATTGCACTTCC 45933
||||||||| ||||| ||| ||| | | |||||||| |||||| | ||| ||||||
Sbjct 1445337 TCCAGTGGAACCAAAACCTCCTGAAC--CCCTTTCAGTGTCATCTAAAACTTGAACTTCC 1445280
Query 45934 TTCAGATCAGGATAATATATACGTTGATAGATTAGTTGAGCTATTCTATCACCCGTATTT 45993
| | || || ||| |||| |||| | | || || || || ||| ||||||| | ||
Sbjct 1445279 TCTATTTCTGGGTAAAATATCCGTTCACAAATGAGCTGTGCAGTTCGATCACCCTTTTTG 1445220
Query 45994 ATTTCAAATATATCTTTTCCATTATTGATCAGAATGACTCCAATTGTCCCTCTATAATCT 46053
| ||| | | ||||| ||| ||| | ||| | || |||| | ||||||||||||
Sbjct 1445219 ACTTCGAGCTTTTCTTTGCCAAAATTAAACAGTACAACACCAACATTTCCTCTATAATCT 1445160
Query 46054 TCATCTATTACTCCCCCTCCCACATC---GATACCTTTTAGAGACAGTCCAGATCTAGGA 46110
|||||||| || || |||| ||||| || |||| || || ||||| | |||
Sbjct 1445159 TCATCTATGACACCAGCTCCTACATCTATGAAGTGTTTTGCAGCCAAGCCAGAACGTGGA 1445100
Query 46111 GCTATTCTTCCATAACAGAATTTGGGCATAGACATCCGAATATCTGTTTT 46160
|||| ||| ||||| || || || | || ||| |||| ||||||||
Sbjct 1445099 GCTACTCTCCCATAGCACCCATTAGGAAGAGCTATCTGAATGTCTGTTTT 1445050
>seq15277
Length=4737824
Score = 120 bits (132), Expect = 4e-22
Identities = 98/119 (82%), Gaps = 0/119 (0%)
Strand=Plus/Plus
Query 48165 TCATCTCTACTAATTAATTCGTTAGAAAATGTGAGACCGGGCATTAGTCCACGTTTTTTG 48224
|| ||||| ||||| | ||| || ||||||||||| |||||||| ||||| |||||||||
Sbjct 3367422 TCGTCTCTGCTAATAAGTTCATTGGAAAATGTGAGGCCGGGCATCAGTCCTCGTTTTTTG 3367481
Query 48225 AGCCAAAATATTGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACGGCCGCAAATGC 48283
||||| ||||| | || ||||| ||||||||||| || ||||| || || ||||| ||
Sbjct 3367482 AGCCAGAATATCGATGCAAAAGAACCAGAAAAGAAGATTCCTTCCACTGCGGCAAAGGC 3367540
Score = 89.7 bits (98), Expect = 7e-13
Identities = 104/138 (75%), Gaps = 3/138 (2%)
Strand=Plus/Plus
Query 47795 TTAAAAGTCAACATCTAAAGAAAAATGATTATCT-TCTTGA--GACATAACTCCCATTTT 47851
||| |||||| |||| || | ||| ||| ||| || | ||||| |||||||| |
Sbjct 3365689 TTAGAAGTCAGCATCCAAGGTAAAGGTATTCTCTGTCGTACTGGACATCACTCCCATCCT 3365748
Query 47852 TTGATATTCACCCACACGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATATTTTC 47911
||||| || || || | ||||| || || ||||| || ||||||| ||| ||||| ||
Sbjct 3365749 CTGATACTCGCCTACTCTCTTCTCAAAGAAGTTAGTCTTCCCTTCCAGTGAAATATTCTC 3365808
Query 47912 CATAAAATCAAATGGATT 47929
|||||| |||||||||||
Sbjct 3365809 CATAAAGTCAAATGGATT 3365826
>seq5470
Length=1740762
Score = 93.3 bits (102), Expect = 6e-14
Identities = 147/209 (70%), Gaps = 4/209 (2%)
Strand=Plus/Plus
Query 45876 TCCAGTGGATCCAAATCCT--TGAGCGTCTCTTTCAGTACCATCTAGAGATTGCACTTCC 45933
||||||||| |||| ||| ||| | | |||||||| |||||| | ||| ||||||
Sbjct 165315 TCCAGTGGAAGCAAAACCTCCTGAAC--CCCTTTCAGTGTCATCTAAAACTTGAACTTCC 165372
Query 45934 TTCAGATCAGGATAATATATACGTTGATAGATTAGTTGAGCTATTCTATCACCCGTATTT 45993
| | || || ||| |||| || | | | || || || || |||| ||||| | | ||
Sbjct 165373 TCTATTTCTGGGTAAAATATGCGGTCACAAATGAGATGTGCAATTCGATCACACTTCTTG 165432
Query 45994 ATTTCAAATATATCTTTTCCATTATTGATCAGAATGACTCCAATTGTCCCTCTATAATCT 46053
| |||||| | ||||| ||| ||| | ||| | | |||| | ||||||||||||
Sbjct 165433 ACTTCAAACTTTTCTTTGCCAAAATTAAACAGTACAATACCAACGTTTCCTCTATAATCT 165492
Query 46054 TCATCTATTACTCCCCCTCCCACATCGAT 46082
|||| ||| || | |||| ||||| ||
Sbjct 165493 TCATTTATGACACTGGCTCCGACATCTAT 165521
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 694402107964320
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |