Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lipotes_20vexillifer_20[refseq_20GCF_5F000442215.1_202013-07-31] 30,713 sequences; 2,429,212,129 total letters Query= NC_031048.1 Length=41918 Score E Sequences producing significant alignments: (Bits) Value seq7504 105 2e-18 seq12372 95.1 3e-15 >seq7504 Length=9783 Score = 105 bits (116), Expect = 2e-18 Identities = 206/297 (69%), Gaps = 17/297 (6%) Strand=Plus/Minus Query 26908 GCCATTCATGCCCACGTTGATTTCAGTGGTGTAGCGCTCAACGCCTTGCTGATCAGTCCA 26967 ||| || ||| | ||| ||||||||||||||||||||| | ||| | | || ||| Sbjct 3118 GCCGTTGATGTCAACGATGATTTCAGTGGTGTAGCGCTTGATGCCGTCTTTTTC---CCA 3062 Query 26968 TTTACGGGTTCGCAGACCGCCTTCAATGAA-CACCTTGCTG-CCTTTGCGCAGGTATTCA 27025 | |||||| |||| |||||| ||| | ||| ||| |||||||||||||| || Sbjct 3061 CTCACGGGTCTGCAGCTTGCCTTCGATGTAGCAC--TGCGAACCTTTGCGCAGGTACTCG 3004 Query 27026 CCAGCGATTTCCGCCAGCTTGCCGAAGAT-GACAACGCGGTGCCATTCCGTCTGCT---- 27080 || || || || || | ||||||||| | |||| | ||||||||||| || ||| Sbjct 3003 CCGGCAATCTCAGCAACCTTGCCGAACAGCGACA-CACGGTGCCATTCGGTACGCTCGAC 2945 Query 27081 CTTTTGGTTCGCCTGTGGCCTTATCTTTCCACTTTTCGGTTGTGGCAATGCTGAGATTGG 27140 ||| ||| || ||| ||| || |||| | ||| | || || | ||| || |||| Sbjct 2944 CTTCTGGCCCGACTG----CTTGTCGGTCCATTGCTCGCTGGTTGCCAGGCTCAGGTTGG 2889 Query 27141 CAACTGCGCCACCTGACGGCATGTAGCGCACTTCTGGATCGTTGCCTAAATTACCGA 27197 || || ||| |||| |||||| ||||| ||||| | ||| | |||||| Sbjct 2888 TCACGGCATTACCGTTGGGCAGGTAGCGGACTTCGGGATCCTGGCCACAGGTACCGA 2832 >seq12372 Length=38393 Score = 95.1 bits (104), Expect = 3e-15 Identities = 190/278 (68%), Gaps = 13/278 (5%) Strand=Plus/Minus Query 26908 GCCATTCATGCCCACGTTGATTTCAGTGGTGTAGCGCTCAACGCCTTGCTGATCAGTCCA 26967 ||| || ||| | || |||||||||||||||| |||| | ||| | || || ||| Sbjct 38303 GCCGTTGATGTCGACAATGATTTCAGTGGTGTAACGCTTGATGCCGTCCTTCTC---CCA 38247 Query 26968 TTTACGGGTTCGCAGACCGCCTTCAATGAACACCTTGCTGCCTTTGCGCAGGTATTCACC 27027 | |||||| |||| |||||| ||| | | | |||||||||||||| || || Sbjct 38246 CTCGCGGGTTTGCAGCTTGCCTTCGATGTAGCATTGGGAACCTTTGCGCAGGTACTCGCC 38187 Query 27028 AGCGATTTCCGCCAGCTTGCCGAAGAT-GACAACGCGGTGCCATTCCGTCTGCT----CT 27082 ||||| || |||| ||||||||| | |||| |||||||||| || || ||| || Sbjct 38186 GGCGATCTCGGCCACCTTGCCGAACAACGACA-CGCGGTGCCACTCGGTGCGCTCGACCT 38128 Query 27083 TTTGGTTCGCCTGTGGCCTTATCTTTCCACTTTTCGGTTGTGGCAATGCTGAGATTGGCA 27142 | || || || ||| || |||||| ||| | ||||| | |||||| || | Sbjct 38127 TCTG----CCCGGTTTGCTTGTCGGTCCACTGCTCGCTGGTGGCCAGGCTGAGGTTAGTT 38072 Query 27143 ACTGCGCCACCTGACGGCATGTAGCGCACTTCTGGATC 27180 || ||| || |||| ||| || ||||| || || Sbjct 38071 ACCGCGTTGCCGTTTGGCAGGTAACGGACTTCGGGGTC 38034 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 133967122103280