Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lipotes_20vexillifer_20[refseq_20GCF_5F000442215.1_202013-07-31] 30,713 sequences; 2,429,212,129 total letters Query= NC_031078.1 Length=50082 Score E Sequences producing significant alignments: (Bits) Value seq30298 179 1e-40 seq1156 125 2e-24 >seq30298 Length=5331 Score = 179 bits (198), Expect = 1e-40 Identities = 185/242 (76%), Gaps = 0/242 (0%) Strand=Plus/Minus Query 40166 GAAGTCGATGTCAACGTCGGGCATGGACACGCGCTCGGGGTTCAGGAACCGCTCGAAGAT 40225 |||||||| ||| | ||||||||||||||| ||||| ||||||||||| |||||||| | Sbjct 2220 GAAGTCGACGTCGAAGTCGGGCATGGACACCCGCTCAGGGTTCAGGAAGCGCTCGAACAG 2161 Query 40226 GAGCCCGTGCGGGATGGGGTCCAGGTCTGTGATGCCGAGGCAGTAGGCGACCAGCGAACC 40285 || ||| | | ||||| ||||| ||||| ||| |||||| ||||||||||| Sbjct 2160 CAGGTCGTAGGCCAGCGGGTCGAGGTCGGTGATCTTGAGCACGTAGGCCACCAGCGAACC 2101 Query 40286 GGCAGCCGAGCCACGTCCGGGTCCGACCCACACGCCGTTCTCCTTGGCCCAGCCGATGAA 40345 ||| ||||||| || || || || ||| |||||||| | ||||||||| |||||| Sbjct 2100 TGCACCCGAGCCTCGGCCAGGCCCCACCGGTACGCCGTTGTTCTTGGCCCACTTGATGAA 2041 Query 40346 GTCGGCGACGACCAGGAAGTAGGACGGGAACCCCAGCTGGATGATCATGTCGATCTCGTA 40405 ||| |||| ||||||||| ||||| |||| ||||||||| || || | |||| | Sbjct 2040 GTCCATCACGATCAGGAAGTAACCGGGGAAGCCCATCTGGATGATGATATCCAGCTCGAA 1981 Query 40406 CT 40407 || Sbjct 1980 CT 1979 Score = 93.3 bits (102), Expect = 1e-14 Identities = 105/141 (74%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 39200 CTCCTTGGCCAGAACCTCGGGCTTCTTCTTGCCCATGGCTCGGCGGAGAAGGTCGGCCTG 39259 || |||||||| |||||||||||||||||||||| || || || || | |||||| Sbjct 3171 CTGCTTGGCCATTTCCTCGGGCTTCTTCTTGCCCATCGCCCGACGCAGCATGTCGGCGCC 3112 Query 39260 ACCCAGGCTGTACCCAGCGAGGATCTGTGCCGCCTTCTGCACCTGCTCCTGGTAGATGAC 39319 ||||| | ||||||| || | | ||| || || | |||||||||||| || | || Sbjct 3111 ACCCAAGGTGTACCCCGCCATCACCTGGGCGATCTGCATCACCTGCTCCTGATACAGGAT 3052 Query 39320 CAGCCCGTAGGTCGGCCCCAG 39340 | |||||||| ||| |||| Sbjct 3051 GATGCCGTAGGTTGGCGCCAG 3031 >seq1156 Length=1237 Score = 125 bits (138), Expect = 2e-24 Identities = 203/290 (70%), Gaps = 4/290 (1%) Strand=Plus/Minus Query 40116 CCGTACTTCTCGGTGACGTACCTGATCACGTCGCCCCGTCGCCGGTCATC--GAAGTCGA 40173 ||||| || |||| |||||| |||||| | | || ||| ||| |||||||| Sbjct 827 CCGTATTTTTCGGCCACGTACTCAATCACGCGGTCACG--GCCATCCATGCAGAAGTCGA 770 Query 40174 TGTCAACGTCGGGCATGGACACGCGCTCGGGGTTCAGGAACCGCTCGAAGATGAGCCCGT 40233 ||| | |||||||||||| || || || |||||||||||||| ||||| | || | | Sbjct 769 CGTCGAAGTCGGGCATGGAAACCCGTTCCGGGTTCAGGAACCGTTCGAACAGCAGGTCAT 710 Query 40234 GCGGGATGGGGTCCAGGTCTGTGATGCCGAGGCAGTAGGCGACCAGCGAACCGGCAGCCG 40293 | ||||| ||||| ||||| | |||||| |||||||| || ||| | | Sbjct 709 ATTCAAGCGGGTCAAGGTCGGTGATCTTCTGTACGTAGGCCACCAGCGAGCCAGCACCTG 650 Query 40294 AGCCACGTCCGGGTCCGACCCACACGCCGTTCTCCTTGGCCCAGCCGATGAAGTCGGCGA 40353 | || || || || || ||| || ||||| | |||||||| ||| ||||| | Sbjct 649 ACCCCCGACCAGGGCCTACCGGTACACCGTTGTTTTTGGCCCACTGGATAAAGTCCATTA 590 Query 40354 CGACCAGGAAGTAGGACGGGAACCCCAGCTGGATGATCATGTCGATCTCG 40403 ||| ||||||||| |||||||||| |||||| || || || | |||| Sbjct 589 CGATCAGGAAGTAACCGGGGAACCCCATCTGGATAATGATATCCAGCTCG 540 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 160082393947864