Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Lipotes_20vexillifer_20[refseq_20GCF_5F000442215.1_202013-07-31]
30,713 sequences; 2,429,212,129 total letters
Query= NC_031078.1
Length=50082
Score E
Sequences producing significant alignments: (Bits) Value
seq30298 179 1e-40
seq1156 125 2e-24
>seq30298
Length=5331
Score = 179 bits (198), Expect = 1e-40
Identities = 185/242 (76%), Gaps = 0/242 (0%)
Strand=Plus/Minus
Query 40166 GAAGTCGATGTCAACGTCGGGCATGGACACGCGCTCGGGGTTCAGGAACCGCTCGAAGAT 40225
|||||||| ||| | ||||||||||||||| ||||| ||||||||||| |||||||| |
Sbjct 2220 GAAGTCGACGTCGAAGTCGGGCATGGACACCCGCTCAGGGTTCAGGAAGCGCTCGAACAG 2161
Query 40226 GAGCCCGTGCGGGATGGGGTCCAGGTCTGTGATGCCGAGGCAGTAGGCGACCAGCGAACC 40285
|| ||| | | ||||| ||||| ||||| ||| |||||| |||||||||||
Sbjct 2160 CAGGTCGTAGGCCAGCGGGTCGAGGTCGGTGATCTTGAGCACGTAGGCCACCAGCGAACC 2101
Query 40286 GGCAGCCGAGCCACGTCCGGGTCCGACCCACACGCCGTTCTCCTTGGCCCAGCCGATGAA 40345
||| ||||||| || || || || ||| |||||||| | ||||||||| ||||||
Sbjct 2100 TGCACCCGAGCCTCGGCCAGGCCCCACCGGTACGCCGTTGTTCTTGGCCCACTTGATGAA 2041
Query 40346 GTCGGCGACGACCAGGAAGTAGGACGGGAACCCCAGCTGGATGATCATGTCGATCTCGTA 40405
||| |||| ||||||||| ||||| |||| ||||||||| || || | |||| |
Sbjct 2040 GTCCATCACGATCAGGAAGTAACCGGGGAAGCCCATCTGGATGATGATATCCAGCTCGAA 1981
Query 40406 CT 40407
||
Sbjct 1980 CT 1979
Score = 93.3 bits (102), Expect = 1e-14
Identities = 105/141 (74%), Gaps = 0/141 (0%)
Strand=Plus/Minus
Query 39200 CTCCTTGGCCAGAACCTCGGGCTTCTTCTTGCCCATGGCTCGGCGGAGAAGGTCGGCCTG 39259
|| |||||||| |||||||||||||||||||||| || || || || | ||||||
Sbjct 3171 CTGCTTGGCCATTTCCTCGGGCTTCTTCTTGCCCATCGCCCGACGCAGCATGTCGGCGCC 3112
Query 39260 ACCCAGGCTGTACCCAGCGAGGATCTGTGCCGCCTTCTGCACCTGCTCCTGGTAGATGAC 39319
||||| | ||||||| || | | ||| || || | |||||||||||| || | ||
Sbjct 3111 ACCCAAGGTGTACCCCGCCATCACCTGGGCGATCTGCATCACCTGCTCCTGATACAGGAT 3052
Query 39320 CAGCCCGTAGGTCGGCCCCAG 39340
| |||||||| ||| ||||
Sbjct 3051 GATGCCGTAGGTTGGCGCCAG 3031
>seq1156
Length=1237
Score = 125 bits (138), Expect = 2e-24
Identities = 203/290 (70%), Gaps = 4/290 (1%)
Strand=Plus/Minus
Query 40116 CCGTACTTCTCGGTGACGTACCTGATCACGTCGCCCCGTCGCCGGTCATC--GAAGTCGA 40173
||||| || |||| |||||| |||||| | | || ||| ||| ||||||||
Sbjct 827 CCGTATTTTTCGGCCACGTACTCAATCACGCGGTCACG--GCCATCCATGCAGAAGTCGA 770
Query 40174 TGTCAACGTCGGGCATGGACACGCGCTCGGGGTTCAGGAACCGCTCGAAGATGAGCCCGT 40233
||| | |||||||||||| || || || |||||||||||||| ||||| | || | |
Sbjct 769 CGTCGAAGTCGGGCATGGAAACCCGTTCCGGGTTCAGGAACCGTTCGAACAGCAGGTCAT 710
Query 40234 GCGGGATGGGGTCCAGGTCTGTGATGCCGAGGCAGTAGGCGACCAGCGAACCGGCAGCCG 40293
| ||||| ||||| ||||| | |||||| |||||||| || ||| | |
Sbjct 709 ATTCAAGCGGGTCAAGGTCGGTGATCTTCTGTACGTAGGCCACCAGCGAGCCAGCACCTG 650
Query 40294 AGCCACGTCCGGGTCCGACCCACACGCCGTTCTCCTTGGCCCAGCCGATGAAGTCGGCGA 40353
| || || || || || ||| || ||||| | |||||||| ||| ||||| |
Sbjct 649 ACCCCCGACCAGGGCCTACCGGTACACCGTTGTTTTTGGCCCACTGGATAAAGTCCATTA 590
Query 40354 CGACCAGGAAGTAGGACGGGAACCCCAGCTGGATGATCATGTCGATCTCG 40403
||| ||||||||| |||||||||| |||||| || || || | ||||
Sbjct 589 CGATCAGGAAGTAACCGGGGAACCCCATCTGGATAATGATATCCAGCTCG 540
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 160082393947864
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |