Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Lipotes_20vexillifer_20[refseq_20GCF_5F000442215.1_202013-07-31]
30,713 sequences; 2,429,212,129 total letters
Query= NC_031091.1
Length=43277
Score E
Sequences producing significant alignments: (Bits) Value
seq7971 201 3e-47
seq6273 194 5e-45
seq20693 120 8e-23
seq7154 93.3 1e-14
>seq7971
Length=25187
Score = 201 bits (222), Expect = 3e-47
Identities = 489/728 (67%), Gaps = 21/728 (3%)
Strand=Plus/Plus
Query 32627 TCAGTCGTACAGGCCGTAGCTCAGGTCGTCTGGGTCGCAGTCGATCACCAGAATGGCGTT 32686
|||||||| | |||||| || | |||||||| ||||||||||||| || | ||||||
Sbjct 14420 TCAGTCGTCGAAGCCGTAACTGAAATCGTCTGGATCGCAGTCGATCAGGAGCACGGCGTT 14479
Query 32687 GCCGAAGTACAGCGATGCCAGCATGCGCTCCCACTTCGAGTAGACCTGCATGTCGATCGC 32746
|||||||| ||||| |||| |||||| | |||||| ||| | |||||| | ||
Sbjct 14480 TCCGAAGTAGAGCGAAGCCAACATGCGTTTCCACTTGGAGCGAATGCGCATGTTTACGGC 14539
Query 32747 GATCTTCTTGTCATCGAGCTTGGCGCTATAGACTTCGCCGAACTGTACCTTTGGCT--TC 32804
|| |||||||| | ||| || || ||||||| | | ||||| | || |
Sbjct 14540 TATACGTTTGTCATCCAACTTCGCACTTAGGACTTCGGCTACCTGTATGCTCGGGAGGTG 14599
Query 32805 CAGCGATCCCCGGTCTCACGCTCGCCCTTGATGCTGATGTGAATGGCGTGTTTCAGACTG 32864
| || || | | || ||| ||| |||| | ||| | | || |||| |||
Sbjct 14600 CGGC--TCATCAGGCTTGCGCGAGCCTACGATGTGAACGTGCAGCGAGTTCTTCATGCTG 14657
Query 32865 TGGTTGCTTCGAGGGGAAGATGAGTAG-AGGCCGCTCCGGTATCTGTCTTCCGGCTCAGG 32923
| | | | || | | || | || ||| | || | ||||| || ||||| ||
Sbjct 14658 TAGATTCCCCGCGAGTCAGTTCGCCAGGAGGACATGGCGCGA-CTGTCCTCTGGCTCTGG 14716
Query 32924 ATCGAAATAGATGTGCAGCGTCTTGTGGGAGTAGCTGCCGTCACC--TTCTTCAATGCGA 32981
||| || |||| || || || || | || ||| |||||| | |||
Sbjct 14717 ATCAAAGCCTATGTAGAGGAACTC-TGACCGT--CCGC--TCATGGTTTCTTCGAAGCGG 14771
Query 32982 ATCTCTGGGCGCTCCCACCGGTCTTCGGCGGCGCGCTCCTTGTGGTGCTCGAT---GAAT 33038
||||||||| | ||| | || |||||||| ||| | | |||||| | |||
Sbjct 14772 ATCTCTGGGTTCATCCAATGCTCCTCGGCGGCTTTCTC---GCGATGCTCGCTAACGAAC 14828
Query 33039 TCCTCGAGCAGGGCTTTGAGCGACACCTCGCCGGTCAGCAGGCCATCGCCGGTAAGCACC 33098
|| || |||| ||||||| || || || ||| |||||||||| || ||| | ||||
Sbjct 14829 TCATCCAGCAACCCTTTGAGGGAAACTTCACCGCTCAGCAGGCCTTCACCGTCCATCACC 14888
Query 33099 TCGGTGATCGACTTATCGGCTTGTTCCAAGATGACCGCGCTCAGGCCAGCCGACTCCCAG 33158
|| | ||| | || || ||||| |||| | | | || |||| | ||||||
Sbjct 14889 TCTGCGATGGCTTTCTCTGCTTGGTCCAGCACGGTGGATTGCAACGCAGCTGCCTCCCAC 14948
Query 33159 CGCTGTCGAAGTGCATTTGCGAGGATGGCGTTGTATCGCTGAAGGTCGAGGATGTCGGAC 33218
|||| |||||||| ||||| | | |||||||| ||||| || || | |||||||
Sbjct 14949 CGCTCGCGAAGTGCGTTTGCTACAAGAGCGTTGTAACGCTGCAGCTCAAACATGTCGGTG 15008
Query 33219 ACGTTTGCCGGCAACGCAGCTTTGACAGCTTCCTTGATGGCGCCGCCGAAATCTCCATAG 33278
||||| || |||| || ||||||| ||||| | | | ||||||||| ||||||
Sbjct 15009 ACGTTAGCTGGCAGAGCGGCTTTGATGGCTTCTTGCACTGATTTGCCGAAATCGCCATAG 15068
Query 33279 GAGCGGAACGCGTCGCTCACGACTTCCTTGAACA-GCTTGTCGATGCCTTCGTCGATCAG 33337
|||||||| | ||| |||| || |||||||||| |||| || | ||||| |||||||
Sbjct 15069 GAGCGGAAAGTGTCCTTCACCACGTCCTTGAACATGCTT-TCAACGCCTTGATCGATCAA 15127
Query 33338 TTCGCGCG 33345
||||||||
Sbjct 15128 TTCGCGCG 15135
Score = 93.3 bits (102), Expect = 1e-14
Identities = 184/267 (69%), Gaps = 8/267 (3%)
Strand=Plus/Plus
Query 37002 CTCGCCGCCGACCAGGCCGAACAGAACCAGGCGCTGC--GATTGG-TCATCAATGAGCAG 37058
|| || |||||| ||||||| |||||||| || | ||| | || ||| ||||
Sbjct 17701 CTGGCTGCCGACAAGGCCGAGGAGAACCAGCGCCTCCAGGATGCGCTCGCCAA---GCAG 17757
Query 37059 GCACCCAAGGTCCAGGCCTTGGAGCGACTCAGCG-GCGCAGCCGGAACGATGTGCATCAC 37117
||||| |||||| |||| | | ||| | ||| | || | ||| | || || ||||
Sbjct 17758 GCACCGAAGGTCGCGGCCATCGTGCGTTTG-GCGAGTGCCGGCGGTGCCATATGTGTCAC 17816
Query 37118 GGATGCTGCCAAGCACCTGAAGGTCAGCCCCTCCAGGCTCTTTGACTGGCTCCAGCAGAA 37177
||||| |||||||| || |||| || | || ||| |||| |||||| | | ||
Sbjct 17817 CGATGCGGCCAAGCAGCTTCAGGTGGCGCCATTCAAGCTGTTTGGCTGGCTGGAAGAAAA 17876
Query 37178 CCGATGGATCTACCGCCGGAGCGGCTCTGCTCGCTGGATCGGCTATCAGCCACGAATCCA 37237
||| ||||||||||| || ||||||| || ||||| | |||||||| || |||
Sbjct 17877 CCGCTGGATCTACCGTCGTCGCGGCTCCAAGCGATGGATTGCATATCAGCCCCGGATCAG 17936
Query 37238 AGACGGCTGGATCATGCACAAGGTGAC 37264
| || | ||| |||||| |||||
Sbjct 17937 TGCGGGGCTGCTCAAGCACAAAGTGAC 17963
>seq6273
Length=5978
Score = 194 bits (214), Expect = 5e-45
Identities = 215/287 (75%), Gaps = 0/287 (0%)
Strand=Plus/Plus
Query 40791 GGAACTGAGACGATGAAGATGCCTGACAAACCCGACACTTGGGCGGCTCTGCTCGCCTGG 40850
||||| |||| | || ||||| |||||||| ||||| |||||| ||| || |||
Sbjct 1339 GGAACCGAGATGTCCAACATGCCAGACAAACCAGACACCTGGGCGATAGCGCTTGCGTGG 1398
Query 40851 CTGAGCCAGCATGCGCCGATCATCTACGCTTCCCTGCTGTCGTGGGCCATGGCTATGGCC 40910
||||||||||| |||| ||| |||| || | | |||| || || |||||| |
Sbjct 1399 TTGAGCCAGCATTCGCCAATCCTCTATGCGGCTGCGTTGTCCTGTGCGATGGCTGTCCTT 1458
Query 40911 AGGATTATCTACGGCGGCGGCACTCGCCGGCAGGCCCTCTTGGAGGGCGCGCTGTGTGGT 40970
| || | |||||| ||||| || || || ||| || |||||||||| | ||||||
Sbjct 1459 CGAATCACCTACGGTGGCGGTACACGGCGCCAGATGATCGTGGAGGGCGCTATCTGTGGT 1518
Query 40971 GGGCTAGCGCTGACGATCATCAGCGGCTTCGAGTTCTTCGGCGTGCCGCAGAGCATGGCC 41030
|| || || ||||||||||||||||| | ||||||||| | || |||||||||||
Sbjct 1519 GGCCTGGCCCTGACGATCATCAGCGGGCTTGAGTTCTTCTCTCTCCCCCAGAGCATGGCT 1578
Query 41031 ACCTTCATTGGTGGCTGGATCGGCTTCCTGGGTGTCGAAAAGATCCG 41077
|||||| | ||||||||| | ||||||||||| || || ||||||||
Sbjct 1579 ACCTTCGTAGGTGGCTGGGTTGGCTTCCTGGGGGTGGAGAAGATCCG 1625
>seq20693
Length=30642
Score = 120 bits (132), Expect = 8e-23
Identities = 107/134 (80%), Gaps = 0/134 (0%)
Strand=Plus/Plus
Query 23880 GAGTTCATCCACTTCGCATAGGTGGACAGTAGCATTTGTACGCTATGACCGAGCTGATTC 23939
||| | ||||| ||||| ||||| || || ||| | ||||| | |||||||| ||
Sbjct 8451 GAGCTGATCCATTTCGCGTAGGTAGAGAGCTACATCTCGACGCTGTAGCCGAGCTGGCTC 8510
Query 23940 GCAATGAACGCCGGATTCATCCCCGCCATTAGGCACATGGTCGCGTAGGTGTGCCGAGTG 23999
|| |||||||| || |||||||| | ||| ||||||||||| ||||||||||| || |||
Sbjct 8511 GCGATGAACGCGGGGTTCATCCCAGACATCAGGCACATGGTTGCGTAGGTGTGGCGGGTG 8570
Query 24000 TCGTACTGCCGGCG 24013
|||||||| |||||
Sbjct 8571 TCGTACTGACGGCG 8584
>seq7154
Length=3927
Score = 93.3 bits (102), Expect = 1e-14
Identities = 90/116 (78%), Gaps = 0/116 (0%)
Strand=Plus/Minus
Query 23907 AGTAGCATTTGTACGCTATGACCGAGCTGATTCGCAATGAACGCCGGATTCATCCCCGCC 23966
|| |||| || ||||| || ||||| || || ||||| ||||| ||||| || |||
Sbjct 652 AGCAGCACCTGCACGCTGTGCCCGAGTTGCGCGGCGATGAATGCCGGGTTCATGCCGGCC 593
Query 23967 ATTAGGCACATGGTCGCGTAGGTGTGCCGAGTGTCGTACTGCCGGCGGCGCCTGAT 24022
| ||||||||||||||||| ||||| || ||||||||| ||| ||| ||||||
Sbjct 592 ACCAGGCACATGGTCGCGTACGTGTGGCGCGTGTCGTACAGCCTGCGTTACCTGAT 537
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 138314336022534
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |