Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lipotes_20vexillifer_20[refseq_20GCF_5F000442215.1_202013-07-31] 30,713 sequences; 2,429,212,129 total letters Query= NC_031091.1 Length=43277 Score E Sequences producing significant alignments: (Bits) Value seq7971 201 3e-47 seq6273 194 5e-45 seq20693 120 8e-23 seq7154 93.3 1e-14 >seq7971 Length=25187 Score = 201 bits (222), Expect = 3e-47 Identities = 489/728 (67%), Gaps = 21/728 (3%) Strand=Plus/Plus Query 32627 TCAGTCGTACAGGCCGTAGCTCAGGTCGTCTGGGTCGCAGTCGATCACCAGAATGGCGTT 32686 |||||||| | |||||| || | |||||||| ||||||||||||| || | |||||| Sbjct 14420 TCAGTCGTCGAAGCCGTAACTGAAATCGTCTGGATCGCAGTCGATCAGGAGCACGGCGTT 14479 Query 32687 GCCGAAGTACAGCGATGCCAGCATGCGCTCCCACTTCGAGTAGACCTGCATGTCGATCGC 32746 |||||||| ||||| |||| |||||| | |||||| ||| | |||||| | || Sbjct 14480 TCCGAAGTAGAGCGAAGCCAACATGCGTTTCCACTTGGAGCGAATGCGCATGTTTACGGC 14539 Query 32747 GATCTTCTTGTCATCGAGCTTGGCGCTATAGACTTCGCCGAACTGTACCTTTGGCT--TC 32804 || |||||||| | ||| || || ||||||| | | ||||| | || | Sbjct 14540 TATACGTTTGTCATCCAACTTCGCACTTAGGACTTCGGCTACCTGTATGCTCGGGAGGTG 14599 Query 32805 CAGCGATCCCCGGTCTCACGCTCGCCCTTGATGCTGATGTGAATGGCGTGTTTCAGACTG 32864 | || || | | || ||| ||| |||| | ||| | | || |||| ||| Sbjct 14600 CGGC--TCATCAGGCTTGCGCGAGCCTACGATGTGAACGTGCAGCGAGTTCTTCATGCTG 14657 Query 32865 TGGTTGCTTCGAGGGGAAGATGAGTAG-AGGCCGCTCCGGTATCTGTCTTCCGGCTCAGG 32923 | | | | || | | || | || ||| | || | ||||| || ||||| || Sbjct 14658 TAGATTCCCCGCGAGTCAGTTCGCCAGGAGGACATGGCGCGA-CTGTCCTCTGGCTCTGG 14716 Query 32924 ATCGAAATAGATGTGCAGCGTCTTGTGGGAGTAGCTGCCGTCACC--TTCTTCAATGCGA 32981 ||| || |||| || || || || | || ||| |||||| | ||| Sbjct 14717 ATCAAAGCCTATGTAGAGGAACTC-TGACCGT--CCGC--TCATGGTTTCTTCGAAGCGG 14771 Query 32982 ATCTCTGGGCGCTCCCACCGGTCTTCGGCGGCGCGCTCCTTGTGGTGCTCGAT---GAAT 33038 ||||||||| | ||| | || |||||||| ||| | | |||||| | ||| Sbjct 14772 ATCTCTGGGTTCATCCAATGCTCCTCGGCGGCTTTCTC---GCGATGCTCGCTAACGAAC 14828 Query 33039 TCCTCGAGCAGGGCTTTGAGCGACACCTCGCCGGTCAGCAGGCCATCGCCGGTAAGCACC 33098 || || |||| ||||||| || || || ||| |||||||||| || ||| | |||| Sbjct 14829 TCATCCAGCAACCCTTTGAGGGAAACTTCACCGCTCAGCAGGCCTTCACCGTCCATCACC 14888 Query 33099 TCGGTGATCGACTTATCGGCTTGTTCCAAGATGACCGCGCTCAGGCCAGCCGACTCCCAG 33158 || | ||| | || || ||||| |||| | | | || |||| | |||||| Sbjct 14889 TCTGCGATGGCTTTCTCTGCTTGGTCCAGCACGGTGGATTGCAACGCAGCTGCCTCCCAC 14948 Query 33159 CGCTGTCGAAGTGCATTTGCGAGGATGGCGTTGTATCGCTGAAGGTCGAGGATGTCGGAC 33218 |||| |||||||| ||||| | | |||||||| ||||| || || | ||||||| Sbjct 14949 CGCTCGCGAAGTGCGTTTGCTACAAGAGCGTTGTAACGCTGCAGCTCAAACATGTCGGTG 15008 Query 33219 ACGTTTGCCGGCAACGCAGCTTTGACAGCTTCCTTGATGGCGCCGCCGAAATCTCCATAG 33278 ||||| || |||| || ||||||| ||||| | | | ||||||||| |||||| Sbjct 15009 ACGTTAGCTGGCAGAGCGGCTTTGATGGCTTCTTGCACTGATTTGCCGAAATCGCCATAG 15068 Query 33279 GAGCGGAACGCGTCGCTCACGACTTCCTTGAACA-GCTTGTCGATGCCTTCGTCGATCAG 33337 |||||||| | ||| |||| || |||||||||| |||| || | ||||| ||||||| Sbjct 15069 GAGCGGAAAGTGTCCTTCACCACGTCCTTGAACATGCTT-TCAACGCCTTGATCGATCAA 15127 Query 33338 TTCGCGCG 33345 |||||||| Sbjct 15128 TTCGCGCG 15135 Score = 93.3 bits (102), Expect = 1e-14 Identities = 184/267 (69%), Gaps = 8/267 (3%) Strand=Plus/Plus Query 37002 CTCGCCGCCGACCAGGCCGAACAGAACCAGGCGCTGC--GATTGG-TCATCAATGAGCAG 37058 || || |||||| ||||||| |||||||| || | ||| | || ||| |||| Sbjct 17701 CTGGCTGCCGACAAGGCCGAGGAGAACCAGCGCCTCCAGGATGCGCTCGCCAA---GCAG 17757 Query 37059 GCACCCAAGGTCCAGGCCTTGGAGCGACTCAGCG-GCGCAGCCGGAACGATGTGCATCAC 37117 ||||| |||||| |||| | | ||| | ||| | || | ||| | || || |||| Sbjct 17758 GCACCGAAGGTCGCGGCCATCGTGCGTTTG-GCGAGTGCCGGCGGTGCCATATGTGTCAC 17816 Query 37118 GGATGCTGCCAAGCACCTGAAGGTCAGCCCCTCCAGGCTCTTTGACTGGCTCCAGCAGAA 37177 ||||| |||||||| || |||| || | || ||| |||| |||||| | | || Sbjct 17817 CGATGCGGCCAAGCAGCTTCAGGTGGCGCCATTCAAGCTGTTTGGCTGGCTGGAAGAAAA 17876 Query 37178 CCGATGGATCTACCGCCGGAGCGGCTCTGCTCGCTGGATCGGCTATCAGCCACGAATCCA 37237 ||| ||||||||||| || ||||||| || ||||| | |||||||| || ||| Sbjct 17877 CCGCTGGATCTACCGTCGTCGCGGCTCCAAGCGATGGATTGCATATCAGCCCCGGATCAG 17936 Query 37238 AGACGGCTGGATCATGCACAAGGTGAC 37264 | || | ||| |||||| ||||| Sbjct 17937 TGCGGGGCTGCTCAAGCACAAAGTGAC 17963 >seq6273 Length=5978 Score = 194 bits (214), Expect = 5e-45 Identities = 215/287 (75%), Gaps = 0/287 (0%) Strand=Plus/Plus Query 40791 GGAACTGAGACGATGAAGATGCCTGACAAACCCGACACTTGGGCGGCTCTGCTCGCCTGG 40850 ||||| |||| | || ||||| |||||||| ||||| |||||| ||| || ||| Sbjct 1339 GGAACCGAGATGTCCAACATGCCAGACAAACCAGACACCTGGGCGATAGCGCTTGCGTGG 1398 Query 40851 CTGAGCCAGCATGCGCCGATCATCTACGCTTCCCTGCTGTCGTGGGCCATGGCTATGGCC 40910 ||||||||||| |||| ||| |||| || | | |||| || || |||||| | Sbjct 1399 TTGAGCCAGCATTCGCCAATCCTCTATGCGGCTGCGTTGTCCTGTGCGATGGCTGTCCTT 1458 Query 40911 AGGATTATCTACGGCGGCGGCACTCGCCGGCAGGCCCTCTTGGAGGGCGCGCTGTGTGGT 40970 | || | |||||| ||||| || || || ||| || |||||||||| | |||||| Sbjct 1459 CGAATCACCTACGGTGGCGGTACACGGCGCCAGATGATCGTGGAGGGCGCTATCTGTGGT 1518 Query 40971 GGGCTAGCGCTGACGATCATCAGCGGCTTCGAGTTCTTCGGCGTGCCGCAGAGCATGGCC 41030 || || || ||||||||||||||||| | ||||||||| | || ||||||||||| Sbjct 1519 GGCCTGGCCCTGACGATCATCAGCGGGCTTGAGTTCTTCTCTCTCCCCCAGAGCATGGCT 1578 Query 41031 ACCTTCATTGGTGGCTGGATCGGCTTCCTGGGTGTCGAAAAGATCCG 41077 |||||| | ||||||||| | ||||||||||| || || |||||||| Sbjct 1579 ACCTTCGTAGGTGGCTGGGTTGGCTTCCTGGGGGTGGAGAAGATCCG 1625 >seq20693 Length=30642 Score = 120 bits (132), Expect = 8e-23 Identities = 107/134 (80%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 23880 GAGTTCATCCACTTCGCATAGGTGGACAGTAGCATTTGTACGCTATGACCGAGCTGATTC 23939 ||| | ||||| ||||| ||||| || || ||| | ||||| | |||||||| || Sbjct 8451 GAGCTGATCCATTTCGCGTAGGTAGAGAGCTACATCTCGACGCTGTAGCCGAGCTGGCTC 8510 Query 23940 GCAATGAACGCCGGATTCATCCCCGCCATTAGGCACATGGTCGCGTAGGTGTGCCGAGTG 23999 || |||||||| || |||||||| | ||| ||||||||||| ||||||||||| || ||| Sbjct 8511 GCGATGAACGCGGGGTTCATCCCAGACATCAGGCACATGGTTGCGTAGGTGTGGCGGGTG 8570 Query 24000 TCGTACTGCCGGCG 24013 |||||||| ||||| Sbjct 8571 TCGTACTGACGGCG 8584 >seq7154 Length=3927 Score = 93.3 bits (102), Expect = 1e-14 Identities = 90/116 (78%), Gaps = 0/116 (0%) Strand=Plus/Minus Query 23907 AGTAGCATTTGTACGCTATGACCGAGCTGATTCGCAATGAACGCCGGATTCATCCCCGCC 23966 || |||| || ||||| || ||||| || || ||||| ||||| ||||| || ||| Sbjct 652 AGCAGCACCTGCACGCTGTGCCCGAGTTGCGCGGCGATGAATGCCGGGTTCATGCCGGCC 593 Query 23967 ATTAGGCACATGGTCGCGTAGGTGTGCCGAGTGTCGTACTGCCGGCGGCGCCTGAT 24022 | ||||||||||||||||| ||||| || ||||||||| ||| ||| |||||| Sbjct 592 ACCAGGCACATGGTCGCGTACGTGTGGCGCGTGTCGTACAGCCTGCGTTACCTGAT 537 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 138314336022534