Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lipotes_20vexillifer_20[refseq_20GCF_5F000442215.1_202013-07-31] 30,713 sequences; 2,429,212,129 total letters Query= NC_031127.1 Length=240761 Score E Sequences producing significant alignments: (Bits) Value seq17400 107 3e-18 seq23168 86.0 1e-11 >seq17400 Length=8471 Score = 107 bits (118), Expect = 3e-18 Identities = 156/219 (71%), Gaps = 1/219 (0%) Strand=Plus/Minus Query 196047 TTGAACGAAGGTCACGAGAAAGCTGACCGTACCGGCACGGGCACCATCTCTATTTTCGGG 196106 |||||| | ||| || |||| ||| |||||||| || || || ||| | || || Sbjct 4727 TTGAAC-ATGGTGGTGATAAAGGTGATCGTACCGGAACAGGTACTCGTTCTGTATTTGGT 4669 Query 196107 TATCAGATGCGTTTTGACCTGCGCAAAGGGTTCCCGCTGGTCACCACCAAAAAGTTGCAC 196166 |||||||||| |||||||| ||||| || || || | ||||| |||||| | || Sbjct 4668 CATCAGATGCGCTTTGACCTCTCTAAAGGCTTTCCACTTTTAACCACAAAAAAGGTCCAT 4609 Query 196167 CTGCGATCTATCATCCACGAACTGTTGTGGTTCCTGAACGGCGACACCAACATCCAGTAT 196226 | || |||||| || |||||||| ||||| | || ||||| ||||| | | ||| Sbjct 4608 TTTCGCTCTATCGTCGTTGAACTGTTATGGTTTTTAAAAGGCGATACCAATGTGAAATAT 4549 Query 196227 CTGAAAGACAACAACGTCAGTATCTGGGATGAGTGGGCA 196265 | | || ||||| || | ||||||||||| |||||| Sbjct 4548 TTACAGGATAACAAAGTAACAATCTGGGATGAATGGGCA 4510 >seq23168 Length=990 Score = 86.0 bits (94), Expect = 1e-11 Identities = 89/117 (76%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 196953 CTGCCTAAGCTCGTTATCAAACGTAAACCGGATTCCATTTTCGACTATAAGTTCGAAGAT 197012 ||||| | || || ||||| ||||| || | || || | |||||||||||||||||| Sbjct 246 CTGCCGGAACTGGTGATCAAGCGTAAGCCTGCGTCGATCTACGACTATAAGTTCGAAGAC 305 Query 197013 TTTGAAATCGTGGGTTACGAAAGCCACCCACCCATTAAGGCACCGGTTGCCATCTAA 197069 || ||||||||||||||||| | ||||| ||| ||||| || || |||||| Sbjct 306 TTCGAAATCGTGGGTTACGACGCCGACCCAAGCATCAAGGCCGACGTGGCGATCTAA 362 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 770011469437080