Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lipotes_20vexillifer_20[refseq_20GCF_5F000442215.1_202013-07-31] 30,713 sequences; 2,429,212,129 total letters Query= NC_031129.1 Length=103445 Score E Sequences producing significant alignments: (Bits) Value seq6053 201 7e-47 seq6890 167 2e-36 seq15544 141 6e-29 seq12372 102 5e-17 seq7504 102 5e-17 >seq6053 Length=4391 Score = 201 bits (222), Expect = 7e-47 Identities = 508/767 (66%), Gaps = 8/767 (1%) Strand=Plus/Plus Query 96702 AGTTATCAAACCGTGAGTATTGGCCGTTAAAAGCCAATCTCACCGTGCCAATTGGGCCAT 96761 |||| || || || | ||| | |||| | || |||| | ||| ||||||||| || | Sbjct 539 AGTTCTCGAAACGGGTGTACTTGCCGATGAACGCCAGGCGCACAAAGCCAATTGGCCCGT 598 Query 96762 TTCGTTGCTTTCCGATAATTACCTCGGCAATGCCCTTCATTTCGCTATCCGGGTGATAAA 96821 | || || || ||||| || | || || | ||| || ||| | || |||||||| | Sbjct 599 TACGCTGTTTGCCGATGATGATTTCCGCCACGCCTTTGTGCTCGGTTTCGGGGTGATACA 658 Query 96822 CTTCGTCGCGATACAAAAACATGATCAGGTCTGCGTCCTGCTCAATTGCTCCTGATTCAC 96881 | |||||||| |||| |||||||| | ||| ||||||||||| ||||| || ||||||| Sbjct 659 CCTCGTCGCGGTACACGAACATGATGACGTCGGCGTCCTGCTCGATTGCACCGGATTCAC 718 Query 96882 GTAAATCTGAATTTACCGGTCGTTTGTCCGCACGCTGTTCAAGCGATCGATTAAGTTGTG 96941 | || || || || ||||| ||||||| || ||||| || || || || || || || | Sbjct 719 GCAAGTCGGAGTTCACCGGGCGTTTGTTCGGGCGCTGCTCCAGAGAGCGGTTGAGCTGCG 778 Query 96942 ACAATGCCACCACC-GGTACTTGTAATTCCTTCGCCAACGCCTTCAGTGAGCGAGAAATC 97000 | | || | ||| || | ||| |||||||| |||| || || || || || || || Sbjct 779 AGAGGGCAATGACCGGGCAATTG-AATTCCTTGGCCAGGGCTTTGAGCGACCGGGAGATT 837 Query 97001 TCGGCAATTTCCAGCGTTCGGTTAT--CTTGCAGCTCCGGGACGC-GCATAAGTTGCAGG 97057 |||| ||| || ||| ||||| | | | || || ||| | |||| || |||||| Sbjct 838 TCGGAAATCTCGTTCGTGCGGTTGTCACCCGAAGAACCAGGAATCTGCATCAGCTGCAGG 897 Query 97058 TAGTCGATCATAATCATGCTCAAACCACCATTTTCTTTATAAACACGACGAGCGCGGGAA 97117 || |||| ||| |||||| | |||| | || | || || | ||| | Sbjct 898 TAATCGACCATGATCATGGCGATCTCACCGTGCTCGCGTGCCAGGCGTCGGGTGCGCGCG 957 Query 97118 CGTAGCTCTGTCGGCGTCAGGGCGCTTGAGTCATCAATAAAAATATTCTGCTTGTCCAAC 97177 || | ||| | || | | | || | |||||| || || | || | | || | | Sbjct 958 CGCATCTCCGATGGGCTGATGCCGGCGGTGTCATCGATGAACAACTTGCGGTCGTTTAGC 1017 Query 97178 AGAATACCCATTGCGCCAGAAACCCGCGCCCAATCCTCGTCGTTAAGTTGCCCTGTTCGA 97237 || | || || | | || | ||| || |||||| | | ||| || | || Sbjct 1018 AGGTT---CACCGCCGACGTGAGGCGTGGCCAGTCGTCGTCGCTCAATTGACCGGAGCGC 1074 Query 97238 ATACGAGTCTGATCAACGCGTGCAAGAGAAGCCAGTGAGCGCATCATCAGCTGGTGGCTC 97297 | ||||| || | || | || || | ||| ||||| | |||| | || Sbjct 1075 ACCTTGGTCTGGTCGATACGACCCAGTGAGGACAGCATACGCATGACCAGCGATTCGCCT 1134 Query 97298 GGCATCTCAAGGCTAAAAACCAATACGGGCTTATCGTTACGAACTGCGGCATTTTCGACG 97357 ||||| || || ||| |||| |||| ||| ||| |||| | |||| ||||| || Sbjct 1135 GGCATTTCCAGCGAAAACACCAGCACGGCCTTGTCGGTACGCAACACGGCGTTTTCCACC 1194 Query 97358 AGATTCATCGCAAACGTGGTCTTCCCCATAGATGGGCGGGCGGCGACAATGATGAGATCG 97417 || ||||| || |||||||| || ||||| || || ||| | || || ||||| || ||| Sbjct 1195 AGGTTCATGGCGAACGTGGTTTTGCCCATCGAAGGCCGGCCCGCCACGATGATCAGGTCG 1254 Query 97418 GACGACTGAAGCCCTGCCGTCTTCTTATTGAGATCGGTAAATCCGGT 97464 | || |||||| || || |||| | || |||||| | ||||| Sbjct 1255 GCCGGCTGAAGGCCGCTGGTTTTCTCGTCCAGGTCGGTATAACCGGT 1301 >seq6890 Length=6377 Score = 167 bits (184), Expect = 2e-36 Identities = 239/336 (71%), Gaps = 3/336 (1%) Strand=Plus/Minus Query 96743 ACCGTGCCAATTGGGCCATTTCGTTGCTTTCCGATAATTACCTCGGCAATGCCCTTCATT 96802 || |||||| | ||||| || ||| ||| ||||| || | |||||||||||| || | Sbjct 5039 ACGGTGCCAGTAGGGCCGTTGCGTGCCTTGCCGATGATGATCTCGGCAATGCCTTTGTAT 4980 Query 96803 TCGCTATCCGGGTGATAAACTTCGTCGCGATACAAAAACATGATCAGGTCTGCGTCCTGC 96862 ||| | | ||||||||| || |||||||| || | |||||||| | |||||||||||| Sbjct 4979 TCGGTCTGCGGGTGATACACCTCGTCGCGGTAAACGAACATGATGACGTCTGCGTCCTGT 4920 Query 96863 TCAATTGCTCCTGATTCACGTAAATCTGAATTTACCGGTCGTTTGTCCGCACGCTGTTCA 96922 || |||||||| ||||| ||||| ||||| || | ||| || |||| || ||| || || Sbjct 4919 TCGATTGCTCCGGATTCCCGTAAGTCTGAGTTGATCGGGCGCTTGTTCGGACGTTGCTCT 4860 Query 96923 AGCGATCGATTAAGTTGTGACAATGCCACCACCGGTACTTGTAATTCCTTCGCCAACGCC 96982 || ||||| || || || || | || ||||| || | | |||||| || | || Sbjct 4859 AGGGATCGGTTGAGCTGCGATAGCGCGACCACTGGGCAGTTCATTTCCTTGGCAAGGGCT 4800 Query 96983 TTCAGTGAGCGAGAAATCTCGGCAATTTCCAGCGTTCGGTTATCTTGCAGCTCCGGGACG 97042 || || | ||||| || || || || | || ||| || | | ||| | | Sbjct 4799 TTAAGGGCCCGAGAGATTGCGCTGATCTCGTTGGCTCTGTT---TTCCTGACCCGCGCAG 4743 Query 97043 CGCATAAGTTGCAGGTAGTCGATCATAATCATGCTC 97078 ||||| || |||||||| || |||| |||| |||| Sbjct 4742 CGCATGAGCTGCAGGTAATCAATCAGGATCAGGCTC 4707 >seq15544 Length=893 Score = 141 bits (156), Expect = 6e-29 Identities = 408/623 (65%), Gaps = 10/623 (2%) Strand=Plus/Minus Query 96847 CAGGTCTGCGTCCTGCTCAATTGCTCCTGATTCACGTAAATCTGAATTTACCGGTCGTTT 96906 || ||| ||||||||||| || ||||| ||||| || || || || || ||||| || || Sbjct 893 CACGTCGGCGTCCTGCTCGATCGCTCCGGATTCCCGCAAGTCGGAGTTCACCGGACGCTT 834 Query 96907 GTCCGCACGCTGTTCAAGCGATCGATTAAGTTGTGACAATGCCACCACC-GGTACTTGTA 96965 || | ||| ||||| || || || || || || ||||| ||||||||| || | ||| | Sbjct 833 GTTGGGACGTTGTTCCAGGGAACGGTTGAGCTGGGACAACGCCACCACCGGGCAGTTG-A 775 Query 96966 ATTCCTTCGCCAACGCCTTCAGTGAGCGAGAAATCTCGGCAATTTCCAGCGTTCGGTTAT 97025 ||||||| |||| ||||||| || ||||| || || | ||| || || ||||| | Sbjct 774 ATTCCTTGGCCAGGGCCTTCAAGGAACGAGAGATTTCAGAAATCTCGTTGGTACGGTTGT 715 Query 97026 C----TTGCAGCTCCGGGACGCGCATAAGTTGCAGGTAGTCGATCATAATCATGCTCAAA 97081 | || | | | |||| |||| | ||||||||||||||||| |||| | | Sbjct 714 CGCCACTGGAAC-CGGGGATCTGCATCAACTGCAGGTAGTCGATCATGATCAGGGCGATG 656 Query 97082 CCACCATTTTCTTTATAAACACGACGAGCGCGGGAACGTAGCTCTGTCGGCGTCAGGGCG 97141 | |||| || | || || | || | || | || | ||| | | | Sbjct 655 TCGCCATGCTCACGCACCAGGCGCCGGGTACGCGCGCGCATTTCGGACGGGCTGATACCC 596 Query 97142 CTTGAGTCATCAATAAAAATATTCTGCTTGTCCAACAGAATACCCATTGCGCCAGAAACC 97201 | ||||||||| || | || | | || | ||| | || ||| | | Sbjct 595 GCAGTGTCATCAATGAACAGCTTGCGGTCGTTGAGCAGGTTGACC---GCGGAGGTCAGG 539 Query 97202 CGCGCCCAATCCTCGTCGTTAAGTTGCCCTGTTCGAATACGAGTCTGATCAACGCGTGCA 97261 |||| ||| || ||||| | ||| || || | || | ||||| || | || || Sbjct 538 CGCGGCCAGTCGTCGTCTTCAAGCTGGCCGGAACGCACCTTGGTCTGGTCGATACGGCCA 479 Query 97262 AGAGAAGCCAGTGAGCGCATCATCAGCTGGTGGCTCGGCATCTCAAGGCTAAAAACCAAT 97321 || || | || ||||| |||| | | || |||||||| ||| | |||| Sbjct 478 AGCGACGAGAGCATACGCATGATCAACGATTCGCCTGGCATCTCGAGGGAGTACACCAGC 419 Query 97322 ACGGGCTTATCGTTACGAACTGCGGCATTTTCGACGAGATTCATCGCAAACGTGGTCTTC 97381 || | ||| ||| | || | |||| ||||| || || |||||||| || |||||||| Sbjct 418 ACCGCCTTGTCGCTGCGTAACACGGCGTTTTCCACCAGGTTCATCGCGAAGGTGGTCTTA 359 Query 97382 CCCATAGATGGGCGGGCGGCGACAATGATGAGATCGGACGACTGAAGCCCTGCCGTCTTC 97441 ||||| || || || ||||||| ||||| | ||||||| ||| || || ||||| Sbjct 358 CCCATGGACGGACGACCGGCGACGATGATCAAGTCGGACGGCTGCAGGCCGCTGGTCTTT 299 Query 97442 TTATTGAGATCGGTAAATCCGGT 97464 | | ||| ||||| | ||||| Sbjct 298 TCGTCGAGGTCGGTGTAACCGGT 276 >seq12372 Length=38393 Score = 102 bits (112), Expect = 5e-17 Identities = 227/340 (67%), Gaps = 3/340 (1%) Strand=Plus/Minus Query 44701 GGCGAGCGCCGATCATTTGCATGGTGCCGCCCTGGCTGACGATAATTTCCGTCGTGTAAC 44760 ||||| |||| | || |||||||||||| | ||| || ||||| || ||||||| Sbjct 38328 GGCGACCGCCTAGCAACTGCATGGTGCCGTTGATGTCGACAATGATTTCAGTGGTGTAAC 38269 Query 44761 GTTCTACACCGGCGTCATCTGTCCACTTACGGGTTTTAAGTTTCCCTTCGATGTAGACCT 44820 | | | ||| | | || ||||| ||||||| || || |||||||||||| | Sbjct 38268 GCTTGATGCCGTCCTTCTC---CCACTCGCGGGTTTGCAGCTTGCCTTCGATGTAGCATT 38212 Query 44821 GAGAACCTTTTCGTAAATACTCACTCGCAATTTCAGCAAGTTTTCCGAACAAAACGACTT 44880 | |||||||| || | ||||| | || || || || | || |||||||| || Sbjct 38211 GGGAACCTTTGCGCAGGTACTCGCCGGCGATCTCGGCCACCTTGCCGAACAACGACACGC 38152 Query 44881 TATGCCATTCTGTTTGCTCTTTCTGTTGGCCCGTTTGCTTGTCGCGCCATGATTCATTCG 44940 ||||| || || |||| || || || |||||||||||| ||| || | | Sbjct 38151 GGTGCCACTCGGTGCGCTCGACCTTCTGCCCGGTTTGCTTGTCGGTCCACTGCTCGCTGG 38092 Query 44941 TTGCGATGCTGAGTCTTCCGACCGCTCCGCCATTTGGTATATACCTGATCTCCGGGTCTT 45000 | || | |||||| | ||||| ||| ||||| | || | || || ||||| | Sbjct 38091 TGGCCAGGCTGAGGTTAGTTACCGCGTTGCCGTTTGGCAGGTAACGGACTTCGGGGTCCT 38032 Query 45001 GCCCCAGGGTACCAATCAGGATGACTTTGTTTACACCGCG 45040 | || || |||| |||||| ||||| ||||| || || Sbjct 38031 GTCCGCAAGTCCCAACCAGGATCACTTTATTTACGCCACG 37992 >seq7504 Length=9783 Score = 102 bits (112), Expect = 5e-17 Identities = 226/337 (67%), Gaps = 9/337 (3%) Strand=Plus/Minus Query 44707 CGCCGATCATTTGCATGGTGCCGCCCTGGCTG---ACGATAATTTCCGTCGTGTAACGTT 44763 |||| | || |||||||||||| | | || ||||| ||||| || ||||| || | Sbjct 3137 CGCCCAGCAGCTGCATGGTGCCG---TTGATGTCAACGATGATTTCAGTGGTGTAGCGCT 3081 Query 44764 CTACACCGGCGTCATCTGTCCACTTACGGGTTTTAAGTTTCCCTTCGATGTAGACCTGAG 44823 | ||| | | || ||||| |||||| | || || |||||||||||| ||| | Sbjct 3080 TGATGCCGTCTTTTTC---CCACTCACGGGTCTGCAGCTTGCCTTCGATGTAGCACTGCG 3024 Query 44824 AACCTTTTCGTAAATACTCACTCGCAATTTCAGCAAGTTTTCCGAACAAAACGACTTTAT 44883 ||||||| || | ||||| | ||||| ||||||| || ||||||| || | Sbjct 3023 AACCTTTGCGCAGGTACTCGCCGGCAATCTCAGCAACCTTGCCGAACAGCGACACACGGT 2964 Query 44884 GCCATTCTGTTTGCTCTTTCTGTTGGCCCGTTTGCTTGTCGCGCCATGATTCATTCGTTG 44943 ||||||| || |||| || ||||||| ||||||||| |||| || | |||| Sbjct 2963 GCCATTCGGTACGCTCGACCTTCTGGCCCGACTGCTTGTCGGTCCATTGCTCGCTGGTTG 2904 Query 44944 CGATGCTGAGTCTTCCGACCGCTCCGCCATTTGGTATATACCTGATCTCCGGGTCTTGCC 45003 | | ||| || | || || || || || | || | || || || || || | Sbjct 2903 CCAGGCTCAGGTTGGTCACGGCATTACCGTTGGGCAGGTAGCGGACTTCGGGATCCTGGC 2844 Query 45004 CCAGGGTACCAATCAGGATGACTTTGTTTACACCGCG 45040 | |||||| | ||| ||||||||||| || || || Sbjct 2843 CACAGGTACCGACCAGAATGACTTTGTTAACCCCACG 2807 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 330775339569358