Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lipotes_20vexillifer_20[refseq_20GCF_5F000442215.1_202013-07-31] 30,713 sequences; 2,429,212,129 total letters Query= NC_031280.1 Length=104906 Score E Sequences producing significant alignments: (Bits) Value seq17400 118 7e-22 seq4096 89.7 3e-13 >seq17400 Length=8471 Score = 118 bits (130), Expect = 7e-22 Identities = 207/298 (69%), Gaps = 5/298 (2%) Strand=Plus/Minus Query 70270 GGGTATTGATCAGATCGAGTGGGTAATTAATGAGATTAAAACTAATCCAAATAGCCGTCG 70329 |||| |||| ||||| ||| ||||||||||||| | ||| ||||| ||| || || Sbjct 4392 GGGT-TTGACCAGATTTCCTGGCTAATTAATGAGATCAGAACCAATCCGAATTCACGCCG 4334 Query 70330 TATGATTGTCACGGGGTGGAACCCTCATGAGATTGAAG--ATGTAGACCTTCCACCATGT 70387 | || || | || ||||| ||| | ||| || | || | | ||||| || Sbjct 4333 GCTCATCGTTTCTGGCTGGAATCCTAA--AGAAGCCAGCCAGGTTGCATTGCCACCTTGC 4276 Query 70388 CATACACTATTCCAATTCTTTGTGGAAGATGGTAAGCTTTCTTGCCAGCTATATCAACGT 70447 ||||| || || || || ||||| || |||| || | ||||||||||| || || || Sbjct 4275 CATACCCTGTTTCAGTTTTTTGTACAAAATGGCAAATTGTCTTGCCAGCTTTACCAGCGC 4216 Query 70448 AGTGCTGACATTTTACTTGGTGTGCCATTCAATATTGCATCATATGCCTTACTTACACAT 70507 ||||| || | || || ||||| || ||||||||||| |||||| | || || ||| Sbjct 4215 AGTGCCGATGTATTCCTGGGTGTACCCTTCAATATTGCGAGTTATGCCCTGCTCACTCAT 4156 Query 70508 CTTATTGCTGCTGAGTGTGGGTTAGGTGTTGGTGAGTTTGTTTGGACTGGTGGTGATA 70565 | |||||| | |||| | |||||||| ||||| ||||| || ||||||| Sbjct 4155 ATGATTGCTCAAGTCTGTGACCTTCAAGTTGGTGATTTTGTCTGGACCGGGGGTGATA 4098 >seq4096 Length=1707 Score = 89.7 bits (98), Expect = 3e-13 Identities = 67/79 (85%), Gaps = 0/79 (0%) Strand=Plus/Plus Query 7852 CGCCATTAGCTCAGATGGATAGAGCATCTGCCTTCTAAGTAGATGGTCACGGGTTCGAAT 7911 |||| |||||||| ||||||||||||| |||||||||| ||||||||| ||||||||| Sbjct 1509 CGCCTGTAGCTCAGTTGGATAGAGCATCCGCCTTCTAAGCGGATGGTCACAGGTTCGAAT 1568 Query 7912 CCTGTATGGCGTACCAATT 7930 ||||| |||| ||| || Sbjct 1569 CCTGTCAGGCGCGCCATTT 1587 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 335448789573331