Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lipotes_20vexillifer_20[refseq_20GCF_5F000442215.1_202013-07-31] 30,713 sequences; 2,429,212,129 total letters Query= NC_031925.1 Length=43788 Score E Sequences producing significant alignments: (Bits) Value seq698 663 0.0 >seq698 Length=3433 Score = 663 bits (734), Expect = 0.0 Identities = 691/904 (76%), Gaps = 2/904 (0%) Strand=Plus/Plus Query 2 GAAGCTGTAGCCGAACGGATGCAGCAACCACGTTTTACGCGTCCACAGGGTTTAAACACC 61 ||| |||||||||| ||| ||||||| ||| || || || ||||||| || ||| || Sbjct 328 GAAACTGTAGCCGAGCGGGTGCAGCAGCCAGGTCTTGCGGCTCCACAGCACTTCAACGCC 387 Query 62 GCCGCCGTTGCCGCGGGACGCTTCGCGCTCGTATTCCAGCGGCATCTCAGGATTGCCTTC 121 ||| ||||| ||||| | | ||| ||||||||| | || |||||| |||||| Sbjct 388 GCCACCGTTACCGCGAGCCTCTTGGCGCTCGTAGGCGGTTGGATGCTCAGGGGAGCCTTC 447 Query 122 GCCGTAACCGATAGCACCCTGGCCGAAGATGATGGAGATGAATTTACGGCTAG-TGCCCT 180 |||||||||||||||||||| || ||||| | | |||||| || | || || |||| Sbjct 448 ACCGTAACCGATAGCACCCTGACCAAAGATCACGCTGATGAACTTGC-GCGAGCTGCCGG 506 Query 181 GACCAACTACGGTCATGCTGTCATCGACGATGACGCGGTAACCCTGGTAGGTGGCGAACA 240 || | |||||||| |||||||| | | |||||| ||||||||||| |||| | Sbjct 507 TGCCGATCACGGTCATCTGGTCATCGATCACCAGGCGGTAGCCCTGGTAGGTCGCGATCT 566 Query 241 TGGTGTTGTTCTCAGCGTCACGGATGAAGTCGATAAGCTGAGCTTTACGCGCCTGCGCAT 300 ||||||||| ||||||||||||||||||||||| | ||| |||||| | ||| Sbjct 567 GGGTGTTGTTGTCAGCGTCACGGATGAAGTCGATCATCTGCTTCTTACGCATGTCGCCAT 626 Query 301 ATACGAAGCTGTGCATCGCGATAGCACCGAGAACCTCGCCACCATTACCCATCAATGCAT 360 | |||||||| |||| ||| || | ||||| |||| ||| ||| | |||||||| |||| Sbjct 627 ACACGAAGCTATGCACCGCCATGACGCCGAGCACCTGGCCGCCAGTCCCCATCAACGCAT 686 Query 361 CACCCATAGTCTGGGTAGCATCGATGAATGCACCTGCGTCGAAGCCTGAAGTTGCAGAAA 420 ||||||| |||||||| || |||||||| || || || ||||| || || || |||| Sbjct 687 CACCCATGGTCTGGGTCGCGTCGATGAAGGCGCCCGCATCGAAACCGCCAGCAGCGGAAA 746 Query 421 CGTCGACCACCATGTCGTTCTGCTCGTGATATGCATCAGTAGCGGATACGTTGTCGTTGT 480 |||||| ||||||||||||||| || | |||||||| ||| | ||||||||||| Sbjct 747 CGTCGATCACCATGTCGTTCTGGGTATGGAACGCATCAGTTGCGCCGATGTTGTCGTTGT 806 Query 481 ACAGACCGAGGGCGGTAGCAATCAGACGACGCTGTGCCTGGCGCTGCCAGAAGTTATCCA 540 | | ||| || | ||| || | ||| || ||||| |||||||||||||||||||| |||| Sbjct 807 AGATACCCAGAGAGGTGGCCAACAGCCGGCGCTGAGCCTGGCGCTGCCAGAAGTTGTCCA 866 Query 541 GGCGAGAGGCTACAGACTGCAATGGATTCTGGCTAGTCAGTTCTACAGTCAGGTCTGCCT 600 |||||| || || || |||| || |||| ||| ||||| || ||||||||||| |||| Sbjct 867 GGCGAGCAGCAACGGATTGCAGCGGGTTCTTGCTGGTCAGCTCGACAGTCAGGTCGGCCT 926 Query 601 GGCCGAAACCTTCGTTCAGATATGCAACGCGGGCCATCATTTCACCGGTCTGAATAGCGC 660 |||| ||||||||||| || || ||||| ||||||| ||| || ||||| | ||| || Sbjct 927 GGCCAAAACCTTCGTTGAGGTACGCAACACGGGCCAGCATATCGCCGGTTTCAATGTTGC 986 Query 661 GCGGGGTCGCGATGTCCTGGTATACGTCATTCGAGTAGTTAGGCTCGATAGAAGTATCGA 720 |||| || | ||| ||| || || ||||||||||| ||||||| || | |||| Sbjct 987 GCGGCTCTGCCACGTCGGCGTACACATCGTTCGAGTAGTTCGGCTCGACGGATGCGTCGA 1046 Query 721 TAGCTTTCCAGAACGGCAGGTTAGCGATGTTAGACGGGCCGCGGGCAATCTCGGCAGCAT 780 | | |||||| |||| | ||| |||||||| ||||||||||| || ||||| ||||| | Sbjct 1047 TCGACTTCCAGTACGGGATGTTCGCGATGTTCGACGGGCCGCGTGCGATCTCAGCAGCGT 1106 Query 781 ACGGAGTTGGGGTCAAAATTCCGGAGTTGAAAAACGCGGTTTTCTCTACCGGGTCTTCCG 840 |||| |||||||| | ||| ||||| | ||| |||||||| || || |||||||||| | Sbjct 1107 ACGGGGTTGGGGTGAGAATGCCGGACTCGAAGAACGCGGTCTTTTCAACCGGGTCTTGGG 1166 Query 841 TCATATAGGACGCCAGTACGGGGATATTACCAGTTACGATGTTACCAATAGTGGTGATTG 900 ||| || || | ||| || ||||| ||||| || | ||| ||||| || |||||||| | Sbjct 1167 TCAGGTACGAGGTCAGCACCGGGATGTTACCGGTGATGATATTACCGATCGTGGTGATAG 1226 Query 901 CCAT 904 ||| Sbjct 1227 GCAT 1230 Score = 104 bits (114), Expect = 7e-18 Identities = 100/126 (79%), Gaps = 2/126 (2%) Strand=Plus/Plus Query 43646 ACGCCAGTTACCAGGAACGCAATCGGCACATGCTTGCGGTCGACTACACGGTTCCAGTTG 43705 || ||||| |||||||| || ||||| | |||||||| || | || |||||||||||| Sbjct 191 ACACCAGTAACCAGGAAGGCGATCGGGATGTGCTTGCGCTCCATCACGCGGTTCCAGTTG 250 Query 43706 GCGGCGTTAGCCAGGTCCTGCCAGCTAGCGGAACG-GGCGATAGTCTCGGTGCCGTTGCC 43764 | ||| ||||| ||||||||| || || || |||| | ||||||||||||||||| Sbjct 251 GTGGCCAGCGCCAGATCCTGCCAGGAGGCAGAGCGCGGCG-TGGTCTCGGTGCCGTTGCC 309 Query 43765 GGTGAT 43770 |||||| Sbjct 310 GGTGAT 315 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 139948939637500