Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lipotes_20vexillifer_20[refseq_20GCF_5F000442215.1_202013-07-31] 30,713 sequences; 2,429,212,129 total letters Query= NC_033176.1 Length=224064 Score E Sequences producing significant alignments: (Bits) Value seq8280 174 2e-38 seq26985 91.5 2e-13 >seq8280 Length=2548064 Score = 174 bits (192), Expect = 2e-38 Identities = 176/229 (77%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 9256 GTCTGGAACAGTTGCTCGTCACTCCATTCTGGATGTTCTTGTTTCAGAACATCGCACACC 9315 |||||||||| || || || |||||||||||| || ||||| || ||||| ||||| Sbjct 2052985 GTCTGGAACAACTGTTCATCGTCCCATTCTGGATGCTCATGTTTAAGCACATCACACACT 2053044 Query 9316 CTGTTGTGTTCCCTGAGCCAGATAGTGGCGTACATCATGAGCCCAGGTACCAGGCCAAAA 9375 ||||||||||||| ||||| || ||||| |||||||| || ||||| ||||| ||||| Sbjct 2053045 CTGTTGTGTTCCCGCAGCCAAATTGTGGCATACATCATCAGACCAGGCACCAGACCAAAG 2053104 Query 9376 GCCTCTTGACCGACAGCCAGACGCATGTTTTCGGGCACTTCGGGAGGATAGATCATGTGC 9435 | || || || ||||| | |||| || ||| || || | || || |||||||| | Sbjct 2053105 ACTTCCTGCCCCACAGCAAACCGCAGGTGTTCAGGAACATGAGGGGGGTAGATCATCTTG 2053164 Query 9436 ACCTGGACGTCTTTGACCGAGGGGGGATACATTTCACCGTCAATCATCT 9484 ||||| |||||||| | ||| |||||||||||||| |||| |||| Sbjct 2053165 ACCTGAGTATCTTTGACTGTGGGAGGATACATTTCACCACCAATTATCT 2053213 Score = 125 bits (138), Expect = 1e-23 Identities = 210/304 (69%), Gaps = 0/304 (0%) Strand=Plus/Plus Query 8283 GAACTCGGAACGCGGCCAACGGACACCCCTTGACGTTGCTACAGACTAGAGACTGAATAG 8342 |||| | ||| | || || ||||| || || || || | |||| ||||||||||| | Sbjct 2051366 GAACACTGAATGAGGTAAAAGGACAGCCTTTCACATTATTGCAGATGAGAGACTGAATTG 2051425 Query 8343 TTGCGCTCTTGACGATCCCGAACCCCACGTCTCCGCCGAAGGTGCTGGGCTTCCAGTACC 8402 || | |||| ||| || || || ||||| || || ||||| |||||||||||| Sbjct 2051426 AGGCAGTGTTGATGATTTTAAAACCTACTTCTCCACCAAAAGTGCTAGGCTTCCAGTACT 2051485 Query 8403 CCGGGGAGCAGATGACGTTCGCCATGAGGCCTTTGAGGGAGAACGGAGCCCCCAACTCGA 8462 | || || || || || |||| || ||||| | |||||| || || || || | Sbjct 2051486 CAGGAGAACATATAGGATTACCCATAAGTCCTTTCAAGGAGAATGGTGCTCCAGCTTCTA 2051545 Query 8463 GAATGCTCTCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACA 8522 ||| |||| || |||||||||| || || |||||||| |||| | | | |||| Sbjct 2051546 CCATGGTCTCCCCAAAGATGGCGTCTGGTCGAGGCTTTTCTACCAGAAGAGCAGGATACA 2051605 Query 8523 GCTCCACAGCCTCGACGTCTCCGTAAAGGGCCCTGAGTTCGGCAGCGATCTCCTTTTCTC 8582 |||||| || || | ||| || || || || | || ||||| || ||||| |||| Sbjct 2051606 GCTCCATGGCATCAATGTCACCATAGAGCGCTTCTAACTCCGCAGCCATTTCCTTCTCTC 2051665 Query 8583 CTGT 8586 |||| Sbjct 2051666 CTGT 2051669 Score = 102 bits (112), Expect = 1e-16 Identities = 118/159 (74%), Gaps = 0/159 (0%) Strand=Plus/Plus Query 9649 TCTTACCCCATGTCCCAGTCCTTTAGTGAAGGCCGGGCCTCGCGCCAAATCAGTCCTAAA 9708 |||||||||||| | | |||| | ||||| || || |||||| ||| ||| | || Sbjct 2054033 TCTTACCCCATGGCTCTGTCCCGTGGTGAAAGCTGGTCCTCGCTTATGATCTGTCTTGAA 2054092 Query 9709 AAACTGGTGCGTGAAATGTTGGCCAAAAAAGGCAAACATTAAGTTGGTGCCCTGGGGATC 9768 ||| || || ||||| || ||| |||| || |||||||| | || |||||||||||||| Sbjct 2054093 AAATTGATGGGTGAAGTGCTGGGCAAAGAATGCAAACATCATATTTGTGCCCTGGGGATC 2054152 Query 9769 GGGAGTGAAGGTCCTCCGAAGAAGAGTTTTTTCCACAAC 9807 || |||| | || | ||||| |||||||||||| Sbjct 2054153 AGGGATGAACTTTCTTCTTAGAAGTACTTTTTCCACAAC 2054191 Score = 95.1 bits (104), Expect = 2e-14 Identities = 112/152 (74%), Gaps = 0/152 (0%) Strand=Plus/Plus Query 9908 TCACCTTTGACCCCAACAGGAGTTGGACAATCGTGAGGAACCGGAGGTAGAATCCTTGCG 9967 ||||||||||| || | || ||||| || || | ||| || ||||| |||| || | | Sbjct 2054636 TCACCTTTGACACCCATGGGTGTTGGGCAGTCATCAGGCACAGGAGGAAGAACTCTGGTG 2054695 Query 9968 TAATAGGAGAGATTGGAGAAAGCTTCCCAGCTTGGGTATTCGTAGTCCGCGTTGTATATG 10027 |||||||| || || || || |||||||||||| || |||||| | | || || | Sbjct 2054696 TAATAGGACAGGTTAGAAAAGGCTTCCCAGCTTTTATAGCCGTAGTGCACATTATAAGTT 2054755 Query 10028 GGAGGGCTGTCAATCAAATCGGATCTACCTGA 10059 || ||||| ||||||| || ||||| |||| Sbjct 2054756 GGCGGGCTCTCAATCAGATGTGATCTCGCTGA 2054787 >seq26985 Length=1365493 Score = 91.5 bits (100), Expect = 2e-13 Identities = 118/163 (72%), Gaps = 0/163 (0%) Strand=Plus/Minus Query 9232 TCCCCGATAATGATGAGTCGAGTGGTCTGGAACAGTTGCTCGTCACTCCATTCTGGATGT 9291 || ||||| | |||||| || | |||||||| |||||||| || | ||| || || Sbjct 914580 TCACCGATGAGGATGAGGCGGGCCGTCTGGAAGAGTTGCTCATCGCCCCAGGTGGGGTGC 914521 Query 9292 TCTTGTTTCAGAACATCGCACACCCTGTTGTGTTCCCTGAGCCAGATAGTGGCGTACATC 9351 || ||||| | || ||||| | |||||| || | ||||||| |||||||| | | Sbjct 914520 TCAGCCTTCAGCAGGTCACACACTCGGTTGTGCTCACGCAGCCAGAGTGTGGCGTAGAGC 914461 Query 9352 ATGAGCCCAGGTACCAGGCCAAAAGCCTCTTGACCGACAGCCA 9394 ||||||||||| | ||| || || |||| || || || |||| Sbjct 914460 ATGAGCCCAGGAAGCAGCCCGAACACCTCCTGGCCCACTGCCA 914418 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 716601582035520