Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Lipotes_20vexillifer_20[refseq_20GCF_5F000442215.1_202013-07-31]
30,713 sequences; 2,429,212,129 total letters
Query= NC_033176.1
Length=224064
Score E
Sequences producing significant alignments: (Bits) Value
seq8280 174 2e-38
seq26985 91.5 2e-13
>seq8280
Length=2548064
Score = 174 bits (192), Expect = 2e-38
Identities = 176/229 (77%), Gaps = 0/229 (0%)
Strand=Plus/Plus
Query 9256 GTCTGGAACAGTTGCTCGTCACTCCATTCTGGATGTTCTTGTTTCAGAACATCGCACACC 9315
|||||||||| || || || |||||||||||| || ||||| || ||||| |||||
Sbjct 2052985 GTCTGGAACAACTGTTCATCGTCCCATTCTGGATGCTCATGTTTAAGCACATCACACACT 2053044
Query 9316 CTGTTGTGTTCCCTGAGCCAGATAGTGGCGTACATCATGAGCCCAGGTACCAGGCCAAAA 9375
||||||||||||| ||||| || ||||| |||||||| || ||||| ||||| |||||
Sbjct 2053045 CTGTTGTGTTCCCGCAGCCAAATTGTGGCATACATCATCAGACCAGGCACCAGACCAAAG 2053104
Query 9376 GCCTCTTGACCGACAGCCAGACGCATGTTTTCGGGCACTTCGGGAGGATAGATCATGTGC 9435
| || || || ||||| | |||| || ||| || || | || || |||||||| |
Sbjct 2053105 ACTTCCTGCCCCACAGCAAACCGCAGGTGTTCAGGAACATGAGGGGGGTAGATCATCTTG 2053164
Query 9436 ACCTGGACGTCTTTGACCGAGGGGGGATACATTTCACCGTCAATCATCT 9484
||||| |||||||| | ||| |||||||||||||| |||| ||||
Sbjct 2053165 ACCTGAGTATCTTTGACTGTGGGAGGATACATTTCACCACCAATTATCT 2053213
Score = 125 bits (138), Expect = 1e-23
Identities = 210/304 (69%), Gaps = 0/304 (0%)
Strand=Plus/Plus
Query 8283 GAACTCGGAACGCGGCCAACGGACACCCCTTGACGTTGCTACAGACTAGAGACTGAATAG 8342
|||| | ||| | || || ||||| || || || || | |||| ||||||||||| |
Sbjct 2051366 GAACACTGAATGAGGTAAAAGGACAGCCTTTCACATTATTGCAGATGAGAGACTGAATTG 2051425
Query 8343 TTGCGCTCTTGACGATCCCGAACCCCACGTCTCCGCCGAAGGTGCTGGGCTTCCAGTACC 8402
|| | |||| ||| || || || ||||| || || ||||| ||||||||||||
Sbjct 2051426 AGGCAGTGTTGATGATTTTAAAACCTACTTCTCCACCAAAAGTGCTAGGCTTCCAGTACT 2051485
Query 8403 CCGGGGAGCAGATGACGTTCGCCATGAGGCCTTTGAGGGAGAACGGAGCCCCCAACTCGA 8462
| || || || || || |||| || ||||| | |||||| || || || || |
Sbjct 2051486 CAGGAGAACATATAGGATTACCCATAAGTCCTTTCAAGGAGAATGGTGCTCCAGCTTCTA 2051545
Query 8463 GAATGCTCTCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACA 8522
||| |||| || |||||||||| || || |||||||| |||| | | | ||||
Sbjct 2051546 CCATGGTCTCCCCAAAGATGGCGTCTGGTCGAGGCTTTTCTACCAGAAGAGCAGGATACA 2051605
Query 8523 GCTCCACAGCCTCGACGTCTCCGTAAAGGGCCCTGAGTTCGGCAGCGATCTCCTTTTCTC 8582
|||||| || || | ||| || || || || | || ||||| || ||||| ||||
Sbjct 2051606 GCTCCATGGCATCAATGTCACCATAGAGCGCTTCTAACTCCGCAGCCATTTCCTTCTCTC 2051665
Query 8583 CTGT 8586
||||
Sbjct 2051666 CTGT 2051669
Score = 102 bits (112), Expect = 1e-16
Identities = 118/159 (74%), Gaps = 0/159 (0%)
Strand=Plus/Plus
Query 9649 TCTTACCCCATGTCCCAGTCCTTTAGTGAAGGCCGGGCCTCGCGCCAAATCAGTCCTAAA 9708
|||||||||||| | | |||| | ||||| || || |||||| ||| ||| | ||
Sbjct 2054033 TCTTACCCCATGGCTCTGTCCCGTGGTGAAAGCTGGTCCTCGCTTATGATCTGTCTTGAA 2054092
Query 9709 AAACTGGTGCGTGAAATGTTGGCCAAAAAAGGCAAACATTAAGTTGGTGCCCTGGGGATC 9768
||| || || ||||| || ||| |||| || |||||||| | || ||||||||||||||
Sbjct 2054093 AAATTGATGGGTGAAGTGCTGGGCAAAGAATGCAAACATCATATTTGTGCCCTGGGGATC 2054152
Query 9769 GGGAGTGAAGGTCCTCCGAAGAAGAGTTTTTTCCACAAC 9807
|| |||| | || | ||||| ||||||||||||
Sbjct 2054153 AGGGATGAACTTTCTTCTTAGAAGTACTTTTTCCACAAC 2054191
Score = 95.1 bits (104), Expect = 2e-14
Identities = 112/152 (74%), Gaps = 0/152 (0%)
Strand=Plus/Plus
Query 9908 TCACCTTTGACCCCAACAGGAGTTGGACAATCGTGAGGAACCGGAGGTAGAATCCTTGCG 9967
||||||||||| || | || ||||| || || | ||| || ||||| |||| || | |
Sbjct 2054636 TCACCTTTGACACCCATGGGTGTTGGGCAGTCATCAGGCACAGGAGGAAGAACTCTGGTG 2054695
Query 9968 TAATAGGAGAGATTGGAGAAAGCTTCCCAGCTTGGGTATTCGTAGTCCGCGTTGTATATG 10027
|||||||| || || || || |||||||||||| || |||||| | | || || |
Sbjct 2054696 TAATAGGACAGGTTAGAAAAGGCTTCCCAGCTTTTATAGCCGTAGTGCACATTATAAGTT 2054755
Query 10028 GGAGGGCTGTCAATCAAATCGGATCTACCTGA 10059
|| ||||| ||||||| || ||||| ||||
Sbjct 2054756 GGCGGGCTCTCAATCAGATGTGATCTCGCTGA 2054787
>seq26985
Length=1365493
Score = 91.5 bits (100), Expect = 2e-13
Identities = 118/163 (72%), Gaps = 0/163 (0%)
Strand=Plus/Minus
Query 9232 TCCCCGATAATGATGAGTCGAGTGGTCTGGAACAGTTGCTCGTCACTCCATTCTGGATGT 9291
|| ||||| | |||||| || | |||||||| |||||||| || | ||| || ||
Sbjct 914580 TCACCGATGAGGATGAGGCGGGCCGTCTGGAAGAGTTGCTCATCGCCCCAGGTGGGGTGC 914521
Query 9292 TCTTGTTTCAGAACATCGCACACCCTGTTGTGTTCCCTGAGCCAGATAGTGGCGTACATC 9351
|| ||||| | || ||||| | |||||| || | ||||||| |||||||| | |
Sbjct 914520 TCAGCCTTCAGCAGGTCACACACTCGGTTGTGCTCACGCAGCCAGAGTGTGGCGTAGAGC 914461
Query 9352 ATGAGCCCAGGTACCAGGCCAAAAGCCTCTTGACCGACAGCCA 9394
||||||||||| | ||| || || |||| || || || ||||
Sbjct 914460 ATGAGCCCAGGAAGCAGCCCGAACACCTCCTGGCCCACTGCCA 914418
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 716601582035520
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |