Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lycaon_20pictus_20[genbank_20GCA_5F001887905.1_202016-12-01] 803 sequences; 2,358,143,818 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq9 129 7e-25 seq14 125 8e-24 seq5 86.0 7e-12 >seq9 Length=64259867 Score = 129 bits (142), Expect = 7e-25 Identities = 110/136 (81%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 24157 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 24216 |||| ||||| ||||| | ||| |||||||||||||| || ||||| ||||| || || | Sbjct 7103041 CCTCATCTCTGCTAATAAGTTCATTGGAAAACGTGAGGCCAGGCATCAGGCCCCGTTTCT 7102982 Query 24217 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 24276 | ||||| ||||| |||||||| || || |||||||| |||||||| || || ||||||| Sbjct 7102981 TGAGCCAGAATATTGACGCAAAAGAACCCGAAAAGAAGATTCCTTCCACGGCAGCAAAGG 7102922 Query 24277 CAATAAGTCTTTCTCC 24292 | | || | |||||| Sbjct 7102921 CCACAACCCGTTCTCC 7102906 Score = 96.9 bits (106), Expect = 4e-15 Identities = 85/106 (80%), Gaps = 0/106 (0%) Strand=Plus/Minus Query 24395 ATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGC 24454 |||||||| ||| || ||||| | ||||||||||| || || || |||||||| ||||| Sbjct 7100816 ATCTTTAATATAAGTGTCAATGAGGAGACTATACATCTCAGAGTGGATGTTTTCCATGGC 7100757 Query 24455 CATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCT 24500 ||||| || || |||||||| | || || |||||||| |||||| Sbjct 7100756 AATTTGGAAGCCATAGAAACAGCGGGCTTCCGTAATCTGAACTTCT 7100711 >seq14 Length=50855280 Score = 125 bits (138), Expect = 8e-24 Identities = 110/137 (80%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 53150 ACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACA 53209 || ||||||||||| || || ||||| ||||| || || || |||||||| ||||| | Sbjct 26626360 ACCTGAAATTCTCCTGATAAGACTCTTCGAGTATAGATGTTGCTGGTATAAGGTTCAATG 26626301 Query 53210 GACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAA 53269 |||||||||||||||| ||| ||||||||||| ||||| ||||| || || | | |||| Sbjct 26626300 GACTCATTATTTCCCAGAATCTGAGCAGTTGAAGCAGTAGGCATTGGGGCAATAAGTAAA 26626241 Query 53270 CTATTTCTAAGACCGTA 53286 || ||||| | ||| || Sbjct 26626240 CTGTTTCTTACACCATA 26626224 Score = 113 bits (124), Expect = 5e-20 Identities = 143/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 53381 GATCCTACATATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAAT 53440 || ||| |||| || || ||||| || | || || || || ||||| || ||||| || Sbjct 26621429 GAACCTTCATAGGTTTCATATGGCCCATGCTCCTTGGCCAGGTCACAGCTGGCCTCCAAG 26621370 Query 53441 GCACCGTAATAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTATCA 53500 || || |||||||||||||| ||||| | |||||| || || ||||| | || ||| Sbjct 26621369 GCTCCATAATAAATGGTTTCAAAGATTTGCTTATTCAGTAGCTGGGCTTCTGGACTCTCA 26621310 Query 53501 AATGGATAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGT 53560 || ||||| | | |||||||| || ||||| | ||||| || ||||| || || || Sbjct 26621309 AAAGGATACCTCATCAGAATAAAAGCATCTGCCAGACCTTGTACCCCAATTCCAATGGGG 26621250 Query 53561 CTATGTCTCTTATTAGA 53577 | ||| | ||||| || Sbjct 26621249 CGATGGCGTTTATTTGA 26621233 Score = 100 bits (110), Expect = 3e-16 Identities = 103/135 (76%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 54025 CTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCT 54084 || |||||||||||| || ||||| |||||||||||||| | || || || |||| | Sbjct 26616291 CTCCACTCGTTTCATGAACAGATCTGGAATCCAAAGAGCAAAGAAAAGGTCCCTGGCACG 26616232 Query 54085 ATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCA 54144 ||||| || ||||| || ||||| || | ||| || ||| | | ||| || ||||||| Sbjct 26616231 CTGTTCTTCCTTTCCCGTGTTCTTCTTTAAATCAAGAAACTCAAAAATGTCTAAATGCCA 26616172 Query 54145 CGGTTCCAAGTATAT 54159 ||||||| ||| || Sbjct 26616171 AGGTTCCAGGTAAAT 26616157 Score = 93.3 bits (102), Expect = 5e-14 Identities = 120/166 (72%), Gaps = 0/166 (0%) Strand=Plus/Minus Query 54768 CACTAAATAGtttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTAGAA 54827 |||| || | ||| |||||||||||||| | || || ||||| || || || || || | Sbjct 26604657 CACTGAACACTTTCTTTGTTTCTTTGTGCAAGTTGGAGACGGCAATCCTTGCTGCCAGGA 26604598 Query 54828 TGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGTCAGAGTGTCCA 54887 ||||||| || ||||| | || || | || || ||| | || || | || ||| |||| Sbjct 26604597 TGGCATAGTCAGGATGCTTAGTCGTCAAGGTTGCAGCTGTCTCAGCAGCCAAAGTATCCA 26604538 Query 54888 ATTCTACCGTTGTTACTCCATTATATATTCCTTGGATAACCTTCAT 54933 ||| || || || || ||| | |||| || ||||| || ||||| Sbjct 26604537 GTTCCACAGTAGTGACCCCACTGTATAAGCCCTGGATTACTTTCAT 26604492 >seq5 Length=63240551 Score = 86.0 bits (94), Expect = 7e-12 Identities = 70/85 (82%), Gaps = 0/85 (0%) Strand=Plus/Plus Query 24633 ACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGATGTCATGA 24692 || ||||| | ||||| || ||||||| ||||| ||||||||| ||||| || ||| | Sbjct 3828521 ACCTCTTCTGCAGTCCAGAAAGATGCCTGTGCCTGTTTATACATTTTCCAAATATCAGGG 3828580 Query 24693 TATTGAATTGGAAAAATAACAAATC 24717 |||||||||||||| || ||||||| Sbjct 3828581 TATTGAATTGGAAAGATGACAAATC 3828605 Score = 84.2 bits (92), Expect = 3e-11 Identities = 84/109 (77%), Gaps = 0/109 (0%) Strand=Plus/Plus Query 24519 AAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAA 24578 |||||||||||||| ||||| ||||||||||||||||| || |||| || |||||| Sbjct 3825120 AAATTTTCATTCACGATTCCATCACTGGCTGCAAAAAAGGCTAATATGTGAGAGATAAAA 3825179 Query 24579 TATTTTTCGTCTGGTGTTAGTTTATTCCAATCATTGATATCTTTAGATA 24627 || || || |||| | | || || ||||| | | || ||| || |||| Sbjct 3825180 TACTTCTCATCTGATTTAAGCTTGTTCCAGTGAGGGAGATCCTTTGATA 3825228 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593715640519440