Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lycaon_20pictus_20[genbank_20GCA_5F001887905.1_202016-12-01] 803 sequences; 2,358,143,818 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq19 143 3e-29 seq34 132 5e-26 seq33 132 5e-26 seq1 127 2e-24 seq36 118 1e-21 seq14 105 7e-18 seq35 89.7 5e-13 seq9 89.7 5e-13 >seq19 Length=38964370 Score = 143 bits (158), Expect = 3e-29 Identities = 160/211 (76%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 40689 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCAC 40748 |||||| || ||||| || || | ||||| || |||||||| | || || || ||| Sbjct 5007175 AATGCAGATCTTCGTGAAGACCTTGACGGGTAAGACCATCACTCTGGAGGTGGAGCCCAG 5007234 Query 40749 CGACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACC 40807 |||| | | | |||| |||||| || || | ||||| |||||||||||| | |||| Sbjct 5007235 TGACACCATCGAGAACG-TCAAGGCGAAGATCCAGGACAAGGAGGGCATCCCCCCTGACC 5007293 Query 40808 AGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 40867 |||| | | |||| || |||||||||||||| || | ||||||||| |||||||| Sbjct 5007294 AGCAGAGGTTGATCTTTGCCGGCAAACAGCTGGAAGATGGGCGCACCCTGTCCGACTACA 5007353 Query 40868 ACATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 |||||||||||||| |||| ||||| || || Sbjct 5007354 ACATCCAGAAGGAGTCCACTCTGCACCTGGT 5007384 Score = 98.7 bits (108), Expect = 1e-15 Identities = 77/92 (84%), Gaps = 0/92 (0%) Strand=Plus/Plus Query 40825 GCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCC 40884 || |||||||||||||| || | ||||||||| |||||||||||||||||||||| || Sbjct 5008223 GCTGGCAAACAGCTGGAAGATGGGCGCACCCTGTCCGACTACAACATCCAGAAGGAGTCC 5008282 Query 40885 ACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 || ||||| | || ||||||||||||| || Sbjct 5008283 ACTCTGCACTTGGTCCTGCGCTTGAGGGGAGG 5008314 >seq34 Length=88915096 Score = 132 bits (146), Expect = 5e-26 Identities = 157/210 (75%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 40687 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCC 40746 |||||||| || ||||| ||||| || || ||||| ||||||||| | || || || || Sbjct 47887685 AAAATGCAGATCTTCGTGAAAACCCTGACCGGCAAGACCATCACCCTGGAGGTGGAGCCC 47887744 Query 40747 ACCGACAGCGT-GCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGA 40805 | |||| | | | ||||| | |||| || || | || ||||||||||||||| | || Sbjct 47887745 AGTGACACCATCGAAAACG-TGAAGGCCAAGATCCAGGATAAAGAGGGCATCCCCCCTGA 47887803 Query 40806 CCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 40865 |||||| | ||||||| || ||||| |||||||| || | ||||| || || || Sbjct 47887804 CCAGCAGAGGCTCATCTTTGCAGGCAAGCAGCTGGAAGATGGCCGCACTCTTTCTGATTA 47887863 Query 40866 CAACATCCAGAAGGAGGCCACGCTGCATCT 40895 |||||||||||| ||| | || || || || Sbjct 47887864 CAACATCCAGAAAGAGTCAACTCTCCACCT 47887893 >seq33 Length=88276357 Score = 132 bits (146), Expect = 5e-26 Identities = 167/228 (73%), Gaps = 1/228 (0%) Strand=Plus/Plus Query 40689 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCAC 40748 |||||| || || || || || | || || || |||||||| | || || || ||| Sbjct 13711007 AATGCAGATCTTTGTGAAGACCTTGACTGGTAAGACCATCACTCTGGAGGTGGAGCCCAG 13711066 Query 40749 CGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | | | |||| | || || | || ||||||||||||||| | ||||| Sbjct 13711067 TGACACCATCGAGAATGTCAAAGGGAAGATCCAAGAAAAAGAGGGCATCCCC-CTGACCA 13711125 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| | | |||| || |||||||||||||| || | ||||||||| ||||||||| Sbjct 13711126 GCAGAGGTTGATCTTTGCCGGCAAACAGCTGGAAGATGGGCGCACCCTACCCGACTACAA 13711185 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 |||||||||||| |||| ||||| | || ||||||||||||| || Sbjct 13711186 CATCCAGAAGGAATCCACTCTGCACTTGGTCCTGCGCTTGAGGGGAGG 13711233 Score = 122 bits (134), Expect = 9e-23 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || | || || || ||||| || | || || || ||| Sbjct 13710779 ATGCAGATCTTCGTGAAGACCTTGACTGGTAAGACCATTACTCTGGAGGTGGAGCCCAAT 13710838 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | | | |||||| ||| || | ||||| || ||||||||| | |||||| Sbjct 13710839 GACACCATCGAGAATGTCAAGGCAAAGATCCAGGACAAGGAAGGCATCCCCCCTGACCAG 13710898 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || | | |||| || ||||||||||||| || | | ||||||| |||||||||| Sbjct 13710899 CAGAGGTTGATCTTTGCCAGCAAACAGCTGGAAGATGGGTGCACCCTGTCCGACTACAAC 13710958 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 |||||||||||| | || ||||| || || | ||| | ||||| || Sbjct 13710959 ATCCAGAAGGAGTCAACTCTGCACCTGGTCCTTCGCCTCAGGGGGGG 13711005 >seq1 Length=122647182 Score = 127 bits (140), Expect = 2e-24 Identities = 150/203 (74%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || | || || || ||||||||| | || || || ||| Sbjct 14843944 ATGCAGATCTTCGTGAAGACCTTGACTGGTAAGACCATCACCCTGGAGGTGGAGCCCAGT 14843885 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | | | |||| | || || | || ||||||||||||||| | |||||| Sbjct 14843884 GACACCATCGAGAATGTCAAAGGGAAGATCCAAGAAAAAGAGGGCATCCCCCCTGACCAG 14843825 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || | | |||| || |||||||||||||| || | |||||||| |||||||||| Sbjct 14843824 CAGAGGTTGATCTTTGCCGGCAAACAGCTGGAAGATGGACGCACCCTGTCCGACTACAAC 14843765 Query 40870 ATCCAGAAGGAGGCCACGCTGCA 40892 |||||||||||| |||| ||||| Sbjct 14843764 ATCCAGAAGGAGTCCACTCTGCA 14843742 Score = 86.0 bits (94), Expect = 6e-12 Identities = 134/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| |||||| | || || || | |||| ||||||||| | || || || ||| Sbjct 93586673 ATGCAGATATTCATGAAGACCCTGGCCTGCAATACCATCACCCTGGAGGTTGAGCCCAGT 93586614 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | ||| | ||| || || | || |||| |||||||| | |||||| Sbjct 93586613 GACACCAACGAAAATGTGAAGACCAAGATCCAAGATAAAGGAGGCATCCCTCCTGACCAG 93586554 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || | ||||||| || ||||| ||||||| || | |||||||| || |||||| Sbjct 93586553 CAGAGGCTCATCTTTGCAGGCAAGAAGCTGGAAGATGGCCGCACCCTTTCTGATTACAAC 93586494 Query 40870 ATCCAGAAGGAG 40881 |||||||| ||| Sbjct 93586493 ATCCAGAAAGAG 93586482 >seq36 Length=80974255 Score = 118 bits (130), Expect = 1e-21 Identities = 166/229 (72%), Gaps = 3/229 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || || || || || || | ||||||||| |||||| | || ||||| ||| Sbjct 43111308 ATGCAGATCTTTGTGAAGACCCTGATGGGCAAAACTATCACCCTTGAGGTCGAGCCCAGT 43111249 Query 40750 GACAGCG-TGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | || ||| | |||| | ||||| | ||||||||||||||||| | ||||| Sbjct 43111248 GACACCACTGAAAATG-TCAAAGCCAAAATCCAAGACAAAGAGGGCATCCCACCTGACCA 43111190 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| || || || | |||||||||||||| || || | || || || |||||||| Sbjct 43111189 GCAGCGTCTGATTTTTGCGGGCAAACAGCTAGAAGATGGCCGAACTCTGTCAGACTACAA 43111130 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 || ||||| ||| |||| |||| | ||| | ||| || | || ||| Sbjct 43111129 TAT-CAGAAAGAGTCCACCTTGCACTTGGTGCTTCGCCTGCGAGGTGGC 43111082 >seq14 Length=50855280 Score = 105 bits (116), Expect = 7e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || || || |||| ||||||| | | || || || ||| Sbjct 29349111 ATGCAGATCTTCGTGAAGACCCTGACCAGCAAGACCATCATCCTGGAGGTGGAGCCCAAT 29349170 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | ||| | |||| || || | || ||||||||||||||| | |||||| Sbjct 29349171 GACACCATCGAAAATGTGAAGGCCAAGATCCAGGATAAAGAGGGCATCCCCCCTGACCAG 29349230 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || | ||||||| || ||||| |||||||| || | | ||| || || ||||| Sbjct 29349231 CAGAGGCTCATCTTTGCAGGCAAGCAGCTGGAAGATGGCCACACTCTTTCTGATGACAAC 29349290 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 |||||||| ||| | || || | || || | || ||||||| ||| Sbjct 29349291 ATCCAGAAAGAGTCAACTCTCTACCTGGTTCTCCGTCTGAGGGGTGGC 29349338 >seq35 Length=77559626 Score = 89.7 bits (98), Expect = 5e-13 Identities = 155/224 (69%), Gaps = 1/224 (0%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||| | || || || || |||| ||||| ||| | || || || ||| Sbjct 46120379 ATGCAGATCTTCCTGAAGACCCTGACCTGCAAGACCATTACCCTGGAGGTGGAGCCCAGT 46120320 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | ||| | |||| || || | || |||||||||| |||| | |||||| Sbjct 46120319 GACACCATTGAAAATGTGAAGGCCAAGATCCAGGATAAAGAGGGCACCCCC-CTGACCAG 46120261 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || | |||||| || || || |||||||| || | |||| || || |||||| Sbjct 46120260 CAGAGGCTCATCGTTGCAGGTAAGCAGCTGGAAGATGGCTGCACTCTTTCTGATTACAAC 46120201 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGG 40913 |||||||| ||| | || || | || || | ||| ||||||| Sbjct 46120200 ATCCAGAAAGAGTCAACTCTCTACCTTGTCCTTCGCCTGAGGGG 46120157 >seq9 Length=64259867 Score = 89.7 bits (98), Expect = 5e-13 Identities = 94/124 (76%), Gaps = 0/124 (0%) Strand=Plus/Plus Query 117044 GTGGCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTTGG 117103 |||||||| || ||||| || || ||||||||||||| ||| || | ||||| ||| Sbjct 7102918 GTGGCCTTTGCTGCCGTGGAAGGAATCTTCTTTTCGGGTTCTTTTGCGTCAATATTCTGG 7102977 Query 117104 CTCAAGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGGAC 117163 ||||||||||| ||||| ||||| ||||| || || ||| || || || ||| || Sbjct 7102978 CTCAAGAAACGGGGCCTGATGCCTGGCCTCACGTTTTCCAATGAACTTATTAGCAGAGAT 7103037 Query 117164 GAGG 117167 |||| Sbjct 7103038 GAGG 7103041 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515214028487280