Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lycaon_20pictus_20[genbank_20GCA_5F001887905.1_202016-12-01] 803 sequences; 2,358,143,818 total letters Query= NC_002593.1 Length=100999 Score E Sequences producing significant alignments: (Bits) Value seq34 107 1e-18 seq36 96.9 2e-15 seq19 89.7 3e-13 seq14 89.7 3e-13 >seq34 Length=88915096 Score = 107 bits (118), Expect = 1e-18 Identities = 148/207 (71%), Gaps = 0/207 (0%) Strand=Plus/Minus Query 34183 CAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAA 34242 |||||| | ||| |||||||| |||||||| || || || ||| | || |||| Sbjct 47887894 CAGGTGGAGAGTTGACTCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATCTTCCAG 47887835 Query 34243 CTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTAT 34302 |||||||||||| || ||||||| ||||||||| ||| | || ||| || || || Sbjct 47887834 CTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGGGGGATGCCCTCTTTATCCTGGAT 47887775 Query 34303 CTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCC 34362 ||| ||| | | | || | || | | || || |||| |||||||| ||||| Sbjct 47887774 CTTGGCCTTCACGTTTTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTGCC 47887715 Query 34363 GGTGAGAGTTTTCACAAAGATCTGCAT 34389 ||| || |||||||| ||||||||||| Sbjct 47887714 GGTCAGGGTTTTCACGAAGATCTGCAT 47887688 >seq36 Length=80974255 Score = 96.9 bits (106), Expect = 2e-15 Identities = 163/232 (70%), Gaps = 3/232 (1%) Strand=Plus/Plus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || || ||||| | ||||||| ||| || || |||||||| || |||||||| ||| Sbjct 43111083 CCACCTCGCAGGCGAAGCACCAAGTGCAAGGTGGACTCTTTCTG-ATATTGTAGTCTGAC 43111141 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 || ||| | || || | ||| ||||| || ||||| || ||||||||||| || Sbjct 43111142 AGAGTTCGGCCATCTTCTAGCTGTTTGCCCGCAAAAATCAGACGCTGCTGGTCAGGTGGG 43111201 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTT-AGATCGGCTATCGAATCGGTCGATTCGAC 34341 | || ||| ||||| || ||| ||||| | || | | | || | | ||||| Sbjct 43111202 ATGCCCTCTTTGTCTTGGAT-TTTGGCTTTGACATTTTCAGTGGTGTCACTGGGCTCGAC 43111260 Query 34342 GTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCATCGCT 34393 || | ||||| |||||||| | || || |||||||||||||||||| || Sbjct 43111261 CTCAAGGGTGATAGTTTTGCCCATCAGGGTCTTCACAAAGATCTGCATCTCT 43111312 >seq19 Length=38964370 Score = 89.7 bits (98), Expect = 3e-13 Identities = 147/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 34178 AGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCG 34237 || |||||||| | ||| || ||||| ||||||||||||||||| || | || Sbjct 5007387 AGGACCAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGCCCATCT 5007328 Query 34238 TCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCG 34297 |||| ||| ||||| || || || | || ||||||||| ||| | || ||||||||| Sbjct 5007327 TCCAGCTGTTTGCCGGCAAAGATCAACCTCTGCTGGTCAGGGGGGATGCCCTCCTTGTCC 5007268 Query 34298 GCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTT 34357 ||||| ||| | | | || | || | | || || |||| |||||||| Sbjct 5007267 TGGATCTTCGCCTTGACGTTCTCGATGGTGTCACTGGGCTCCACCTCCAGAGTGATGGTC 5007208 Query 34358 TTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 || || || | || ||||| ||||||||||| Sbjct 5007207 TTACCCGTCAAGGTCTTCACGAAGATCTGCAT 5007176 >seq14 Length=50855280 Score = 89.7 bits (98), Expect = 3e-13 Identities = 147/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 34178 AGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCG 34237 || ||||||| | ||| |||||||| ||||||| || || || || | || Sbjct 29349322 AGAACCAGGTAGAGAGTTGACTCTTTCTGGATGTTGTCATCAGAAAGAGTGTGGCCATCT 29349263 Query 34238 TCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCG 34297 |||| |||||||||||| || ||||||| ||||||||| ||| | || ||| || || Sbjct 29349262 TCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGGGGGATGCCCTCTTTATCC 29349203 Query 34298 GCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTT 34357 ||||| ||| | || | || | || | | || || |||| ||||||| Sbjct 29349202 TGGATCTTGGCCTTCACATTTTCGATGGTGTCATTGGGCTCCACCTCCAGGATGATGGTC 29349143 Query 34358 TTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 |||| ||| || || ||||| ||||||||||| Sbjct 29349142 TTGCTGGTCAGGGTCTTCACGAAGATCTGCAT 29349111 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 323068838235680