Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lycaon_20pictus_20[genbank_20GCA_5F001887905.1_202016-12-01] 803 sequences; 2,358,143,818 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq2 161 1e-34 seq14 125 9e-24 seq9 123 3e-23 seq5 86.0 8e-12 >seq2 Length=69326197 Score = 161 bits (178), Expect = 1e-34 Identities = 157/202 (78%), Gaps = 0/202 (0%) Strand=Plus/Plus Query 9231 TTCTTATTAGATACTTCCAAAAGCTGTAACAGATGCAAGAACAGATTGATGATATCCAAG 9290 || |||||| | ||||||||| | | ||||| |||| |||||| ||||||| |||||| Sbjct 8639548 TTTTTATTAACTGCTTCCAAAAACCGCAACAGGTGCAGGAACAGGTTGATGACATCCAAA 8639607 Query 9291 TAGAAATTGATAGAGGCTAACACATAGTCTTCAGGCGAGAGCTTATGTATTAGTGAGTGC 9350 || | |||| | ||||| ||||| |||||||| || ||| |||| || | ||| || Sbjct 8639608 TAAAGGCTGATGGCAGCTAATACATATTCTTCAGGTGACAGCCTATGCATCAATGAATGT 8639667 Query 9351 GTGTCATAGATAATGAATCCGCAGAATACAAGGGCCCCAAAAGCAGACAGGACCAGCTCC 9410 ||||||||||| |||||||| ||||| | |||||||| | ||||| || ||||| |||| Sbjct 8639668 GTGTCATAGATGATGAATCCACAGAAAAGGAGGGCCCCCACAGCAGCCAAGACCAACTCC 8639727 Query 9411 ACTGTTTCACTTTGCACAAATA 9432 | ||||| ||| | | ||||| Sbjct 8639728 AATGTTTGACTATAGAAAAATA 8639749 Score = 134 bits (148), Expect = 2e-26 Identities = 101/119 (85%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 9480 CCTGCTCCAAGTTTACTGAAATCTCTCTTTGATTGTAGAGTATATGCAGTCAGAGCAAGA 9539 |||||||||| ||| |||||||||||||| ||||||||||||||| |||||| | ||||| Sbjct 8647302 CCTGCTCCAAATTTGCTGAAATCTCTCTTAGATTGTAGAGTATATACAGTCAAACCAAGA 8647361 Query 9540 AACACTGCAGTAGTCAGCATGAAAGCTTGCATAACGACATGCACATCATAGAAAGTAAC 9598 || || ||||||||||| || || ||||||| | | || ||||||||||||||||| Sbjct 8647362 AATACAGCAGTAGTCAGTATAAACGCTTGCAGGATAATATAGACATCATAGAAAGTAAC 8647420 Score = 114 bits (126), Expect = 2e-20 Identities = 89/104 (86%), Gaps = 3/104 (3%) Strand=Plus/Plus Query 9847 CCATTCGTATGTGCACACTGGCAGACGCCACCGAGCTGCCATAGTTGAAGTCGTCCTCGA 9906 ||||||| |||||||||||||| || ||||| ||||||||||||||||||||||||||| Sbjct 8666274 CCATTCGGATGTGCACACTGGCGGAGGCCACGCAGCTGCCATAGTTGAAGTCGTCCTCGA 8666333 Query 9907 TGGAGGAGCACGCGTA--GAGGCTCGGCAT-GGCCATGGCGGCG 9947 |||||| ||| | ||| | || |||| | ||||||||||||| Sbjct 8666334 TGGAGGCGCAGGGGTAGCGGGGGTCGGGGTCGGCCATGGCGGCG 8666377 >seq14 Length=50855280 Score = 125 bits (138), Expect = 9e-24 Identities = 110/137 (80%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 65181 ACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACA 65240 || ||||||||||| || || ||||| ||||| || || || |||||||| ||||| | Sbjct 26626360 ACCTGAAATTCTCCTGATAAGACTCTTCGAGTATAGATGTTGCTGGTATAAGGTTCAATG 26626301 Query 65241 GACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAA 65300 |||||||||||||||| ||| ||||||||||| ||||| ||||| || || | | |||| Sbjct 26626300 GACTCATTATTTCCCAGAATCTGAGCAGTTGAAGCAGTAGGCATTGGGGCAATAAGTAAA 26626241 Query 65301 CTATTTCTAAGACCGTA 65317 || ||||| | ||| || Sbjct 26626240 CTGTTTCTTACACCATA 26626224 Score = 113 bits (124), Expect = 6e-20 Identities = 143/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 65412 GATCCTACATATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAAT 65471 || ||| |||| || || ||||| || | || || || || ||||| || ||||| || Sbjct 26621429 GAACCTTCATAGGTTTCATATGGCCCATGCTCCTTGGCCAGGTCACAGCTGGCCTCCAAG 26621370 Query 65472 GCACCGTAATAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTATCA 65531 || || |||||||||||||| ||||| | |||||| || || ||||| | || ||| Sbjct 26621369 GCTCCATAATAAATGGTTTCAAAGATTTGCTTATTCAGTAGCTGGGCTTCTGGACTCTCA 26621310 Query 65532 AATGGATAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGT 65591 || ||||| | | |||||||| || ||||| | ||||| || ||||| || || || Sbjct 26621309 AAAGGATACCTCATCAGAATAAAAGCATCTGCCAGACCTTGTACCCCAATTCCAATGGGG 26621250 Query 65592 CTATGTCTCTTATTAGA 65608 | ||| | ||||| || Sbjct 26621249 CGATGGCGTTTATTTGA 26621233 Score = 96.9 bits (106), Expect = 5e-15 Identities = 104/138 (75%), Gaps = 0/138 (0%) Strand=Plus/Minus Query 66056 CTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAAATCTCTGGTTCT 66115 || |||||||||||| || ||||| |||||||||||||| | || | || |||| | Sbjct 26616291 CTCCACTCGTTTCATGAACAGATCTGGAATCCAAAGAGCAAAGAAAAGGTCCCTGGCACG 26616232 Query 66116 ATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCATAATGCCA 66175 ||||| || ||||| || ||||| || | ||| || ||| | | ||| || ||||||| Sbjct 26616231 CTGTTCTTCCTTTCCCGTGTTCTTCTTTAAATCAAGAAACTCAAAAATGTCTAAATGCCA 26616172 Query 66176 CGGTTCCAAGTATATGGC 66193 ||||||| ||| || || Sbjct 26616171 AGGTTCCAGGTAAATAGC 26616154 Score = 95.1 bits (104), Expect = 2e-14 Identities = 131/182 (72%), Gaps = 5/182 (3%) Strand=Plus/Minus Query 66786 TCCTCCA---TCACTTCACTAAATAGtttttttGTTTCTTTGTGTAGATTTGATACGGCT 66842 ||||||| |||| |||| || | ||| |||||||||||||| | || || ||||| Sbjct 26604671 TCCTCCAGACTCAC--CACTGAACACTTTCTTTGTTTCTTTGTGCAAGTTGGAGACGGCA 26604614 Query 66843 ATTCTAGCGGCTATAATGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCG 66902 || || || || | |||||||| || ||||| | || || | || || ||| | || Sbjct 26604613 ATCCTTGCTGCCAGGATGGCATAGTCAGGATGCTTAGTCGTCAAGGTTGCAGCTGTCTCA 26604554 Query 66903 GCTGCCAGAGTGTCCAATTCTACCGTTGTTACTCCATTATATATTCCTTGGATAACCTTC 66962 || |||| ||| |||| ||| || || || || ||| | |||| || ||||| || ||| Sbjct 26604553 GCAGCCAAAGTATCCAGTTCCACAGTAGTGACCCCACTGTATAAGCCCTGGATTACTTTC 26604494 Query 66963 AT 66964 || Sbjct 26604493 AT 26604492 >seq9 Length=64259867 Score = 123 bits (136), Expect = 3e-23 Identities = 100/121 (83%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 36180 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 36239 |||| ||||| ||||| | ||| |||||||||||||| || ||||| ||||| || || | Sbjct 7103041 CCTCATCTCTGCTAATAAGTTCATTGGAAAACGTGAGGCCAGGCATCAGGCCCCGTTTCT 7102982 Query 36240 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 36299 | ||||| ||||| |||||||| || || |||||||| |||||||| || || ||||||| Sbjct 7102981 TGAGCCAGAATATTGACGCAAAAGAACCCGAAAAGAAGATTCCTTCCACGGCAGCAAAGG 7102922 Query 36300 C 36300 | Sbjct 7102921 C 7102921 Score = 96.9 bits (106), Expect = 5e-15 Identities = 85/106 (80%), Gaps = 0/106 (0%) Strand=Plus/Minus Query 36418 ATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGC 36477 |||||||| ||| || ||||| | ||||||||||| || || || |||||||| ||||| Sbjct 7100816 ATCTTTAATATAAGTGTCAATGAGGAGACTATACATCTCAGAGTGGATGTTTTCCATGGC 7100757 Query 36478 CATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCT 36523 ||||| || || |||||||| | || || |||||||| |||||| Sbjct 7100756 AATTTGGAAGCCATAGAAACAGCGGGCTTCCGTAATCTGAACTTCT 7100711 >seq5 Length=63240551 Score = 86.0 bits (94), Expect = 8e-12 Identities = 70/85 (82%), Gaps = 0/85 (0%) Strand=Plus/Plus Query 36656 ACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGATGTCATGA 36715 || ||||| | ||||| || ||||||| ||||| ||||||||| ||||| || ||| | Sbjct 3828521 ACCTCTTCTGCAGTCCAGAAAGATGCCTGTGCCTGTTTATACATTTTCCAAATATCAGGG 3828580 Query 36716 TATTGAATTGGAAAAATAACAAATC 36740 |||||||||||||| || ||||||| Sbjct 3828581 TATTGAATTGGAAAGATGACAAATC 3828605 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658166193590520