Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lycaon_20pictus_20[genbank_20GCA_5F001887905.1_202016-12-01] 803 sequences; 2,358,143,818 total letters Query= NC_003401.1 Length=133719 Score E Sequences producing significant alignments: (Bits) Value seq36 134 1e-26 seq11 104 2e-17 seq34 87.8 2e-12 seq9 84.2 2e-11 seq1 84.2 2e-11 >seq36 Length=80974255 Score = 134 bits (148), Expect = 1e-26 Identities = 128/164 (78%), Gaps = 0/164 (0%) Strand=Plus/Minus Query 20989 TCAGGCCCGTGACGTGAGCGATCAGATACGTCAGGAGGGCGTAGCTGGCGATGTTAAACG 21048 ||||||| |||| ||| ||||||| || || || |||||||||||||||||||| || | Sbjct 67495235 TCAGGCCTGTGATGTGTGCGATCATGTAGGTGAGCAGGGCGTAGCTGGCGATGTTGAAGG 67495176 Query 21049 GGACCCCGAGGCCCATGTCGGCGGACCTCTGGTACAGCTGGCAGGACAGCTCCCCCCGAG 21108 | || || || |||||||| | ||||||||||| ||||||||||||||||| || Sbjct 67495175 GCACGCCCAGCCCCATGTCTCCTGACCTCTGGTATAGCTGGCAGGACAGCTCACCGTTCA 67495116 Query 21109 CCACGTAAAACTGACACAAAACGTGACAAGGAGGGAGAGCCATC 21152 |||| || ||||| || | | || || ||||| || |||||| Sbjct 67495115 CCACATAGAACTGGCAGAGGGCATGGCACGGAGGTAGGGCCATC 67495072 >seq11 Length=53741443 Score = 104 bits (114), Expect = 2e-17 Identities = 161/229 (70%), Gaps = 1/229 (0%) Strand=Plus/Minus Query 2963 TTAAACGCATCGTCTAGCGTTCTCGCTAGAAAGTGTGCTCCGTGCGGTGGTTCACGTAAT 3022 ||||| ||||| || || || | || ||||| || ||||| || || ||||| | Sbjct 16731361 TTAAA-GCATCATCCAGACTTTTGGCAAGAAAATGAGCTCCTTGTGGAGGTTCCTTGAGG 16731303 Query 3023 TCTCTGCTCAAAATAATATTAATTCTGTTCACCAGAGGGCGCTTCTTTTCAGGGATGGAA 3082 |||||||| | || ||||||||||||| | | ||| || ||||| ||||| || || Sbjct 16731302 TCTCTGCTGAGAACTATATTAATTCTGTCCTTTAAAGGTCGATTCTTCTCAGGAATAGAG 16731243 Query 3083 AACCATGTTCTTTTCCCCATAATAACCACATTCTTTTCACCTACAACCGATGGCGTAGAC 3142 |||||||| | | |||||||| |||| ||||| || |||| | || || | | Sbjct 16731242 AACCATGTCTTCCTACCCATAATCACCAAATTCTGTTTACCTTCCACGGAGAAGTTCGTG 16731183 Query 3143 GTCATTTTCTGAAAATACATCATTTCGTTTCTAAGGTACGGCCAAGGCA 3191 |||||| | || |||||| | | ||| || || || ||||| |||| Sbjct 16731182 GTCATTCTTTGGAAATACTTGAATTCATTCCTGAGCGGGGGCCAGGGCA 16731134 >seq34 Length=88915096 Score = 87.8 bits (96), Expect = 2e-12 Identities = 150/215 (70%), Gaps = 2/215 (1%) Strand=Plus/Plus Query 2963 TTAAACGCATCGTCTAGCGTTCTCGCTAGAAAGTGTGCTCCGTGCGGTGGTTCACGTAAT 3022 ||||| ||||| || || || | || ||||| || ||||| || || ||||| | Sbjct 42955705 TTAAA-GCATCATCCAGATTT-TGGCAAGAAAATGAGCTCCTTGTGGAGGTTCCTTGAGG 42955762 Query 3023 TCTCTGCTCAAAATAATATTAATTCTGTTCACCAGAGGGCGCTTCTTTTCAGGGATGGAA 3082 |||||||| | || ||||||||||||| | | | | || ||||| ||||| || || Sbjct 42955763 TCTCTGCTGAGAACTATATTAATTCTGTCCTTTAAAAGTCGATTCTTCTCAGGAATAGAG 42955822 Query 3083 AACCATGTTCTTTTCCCCATAATAACCACATTCTTTTCACCTACAACCGATGGCGTAGAC 3142 |||||||| | |||||||| ||| ||||| || |||| | || || | | | Sbjct 42955823 AACCATGTCTTCCAACCCATAATTGCCAAATTCTGTTTACCTTCCACAGAGGAGTTCGTG 42955882 Query 3143 GTCATTTTCTGAAAATACATCATTTCGTTTCTAAG 3177 |||||| | || |||||| | | ||| || || || Sbjct 42955883 GTCATTCTTTGGAAATACTTGAATTCATTCCTGAG 42955917 >seq9 Length=64259867 Score = 84.2 bits (92), Expect = 2e-11 Identities = 123/174 (71%), Gaps = 4/174 (2%) Strand=Plus/Minus Query 20931 TCAACGTGGTTGTTGTAAACGTGGGCGTCACCCAAGGTGTGCACAAAGTCTCCCGGGGTC 20990 |||||||| || ||||| || || || ||| || ||||||| || || || Sbjct 59026605 TCAACGTGATTTAGGTAAATATGTGCATCTTTCAAAGTACCTACAAAGTTACCTGGCTTC 59026546 Query 20991 AGGCCCGTGACGTGAGCGATCAGATACGTCAGGAGGGC----GTAGCTGGCGATGTTAAA 21046 ||||| |||| ||| ||| ||| || | || | ||| |||||||| ||||| | Sbjct 59026545 AGGCCTGTGATGTGTGCGGTCATGTAGGCGAGCAAGGCCTGTGTAGCTGGTAATGTTGAG 59026486 Query 21047 CGGGACCCCGAGGCCCATGTCGGCGGACCTCTGGTACAGCTGGCAGGACAGCTC 21100 || || || ||||| ||||| ||||| ||||||| ||||||||||||||| Sbjct 59026485 GGGCACACCCAGGCCTATGTCTTGTGACCTGTGGTACAACTGGCAGGACAGCTC 59026432 >seq1 Length=122647182 Score = 84.2 bits (92), Expect = 2e-11 Identities = 118/162 (73%), Gaps = 3/162 (2%) Strand=Plus/Plus Query 2963 TTAAACGCATCGTCTAGCGTTCTCGCTAGAAAGTGTGCTCCGTGCGGTGGTTCACGTAAT 3022 ||||| | ||| || || || | || ||||| || | ||| || || ||||| | | || Sbjct 42938203 TTAAA-GTATCATCCAGACTTTTGGCAAGAAAATGAGTTCCTTGTGGAGGTTC-CTTGAT 42938260 Query 3023 TCTCTGCTCAAAATAATATTAATTCTGTTCACCAGAGGGCGCTTCTTTTCAGGGATGGAA 3082 |||||| | || ||||||||||||| | | ||| || ||||| ||||| || || Sbjct 42938261 A-TCTGCTGAGAACTATATTAATTCTGTCCTTTAAAGGTCGATTCTTCTCAGGAATAGAG 42938319 Query 3083 AACCATGTTCTTTTCCCCATAATAACCACATTCTTTTCACCT 3124 |||||||| | | |||||||| |||| ||||| || |||| Sbjct 42938320 AACCATGTCTTCCTACCCATAATCACCAAATTCTGTTTACCT 42938361 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 427771813543440