Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lycaon_20pictus_20[genbank_20GCA_5F001887905.1_202016-12-01] 803 sequences; 2,358,143,818 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq34 150 4e-31 seq33 140 7e-28 seq1 131 4e-25 seq35 127 5e-24 seq14 122 2e-22 seq39 116 9e-21 seq5 114 3e-20 seq18 98.7 2e-15 seq9 89.7 1e-12 seq15 87.8 4e-12 >seq34 Length=88915096 Score = 150 bits (166), Expect = 4e-31 Identities = 154/201 (77%), Gaps = 0/201 (0%) Strand=Plus/Minus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || || |||||||| || || || ||||| ||||| | || ||||| || || || || Sbjct 47887884 GTTGACTCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATCTTCCAGCTGCTTGCCT 47887825 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 ||||| || |||||||| || ||||| || || || ||||||||||| ||||| || || Sbjct 47887824 GCAAAGATGAGCCTCTGCTGGTCAGGGGGGATGCCCTCTTTATCCTGGATCTTGGCCTTC 47887765 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 || ||||| | ||| || || || || ||||| || || || ||||| || || || ||| Sbjct 47887764 ACGTTTTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTGCCGGTCAGGGTT 47887705 Query 104543 TTTACAAATATCTGCATTTTG 104563 || || || |||||||||||| Sbjct 47887704 TTCACGAAGATCTGCATTTTG 47887684 >seq33 Length=88276357 Score = 140 bits (154), Expect = 7e-28 Identities = 167/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 104333 CCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGAT 104392 ||||| || || | ||| || || || | || || || ||||| || || ||||| || Sbjct 13711005 CCCCCCCTGAGGCGAAGGACCAGGTGCAGAGTTGACTCCTTCTGGATGTTGTAGTCGGAC 13710946 Query 104393 AGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGT 104452 || || | || ||||| || ||||| | ||||| || | |||||| || ||||| || Sbjct 13710945 AGGGTGCACCCATCTTCCAGCTGTTTGCTGGCAAAGATCAACCTCTGCTGGTCAGGGGGG 13710886 Query 104453 ATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACC 104512 || ||||| || ||||| |||||||| || ||||| || | ||| || | || || ||| Sbjct 13710885 ATGCCTTCCTTGTCCTGGATCTTTGCCTTGACATTCTCGATGGTGTCATTGGGCTCCACC 13710826 Query 104513 TCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 || || ||||| ||||||||||| | || || || || |||||||| Sbjct 13710825 TCCAGAGTAATGGTCTTACCAGTCAAGGTCTTCACGAAGATCTGCAT 13710779 Score = 132 bits (146), Expect = 1e-25 Identities = 149/198 (75%), Gaps = 1/198 (1%) Strand=Plus/Minus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || ||||| ||||| || || ||||| | ||| || | || ||||| || ||||| || Sbjct 13711203 GTGGATTCCTTCTGGATGTTGTAGTCGGGTAGGGTGCGCCCATCTTCCAGCTGTTTGCCG 13711144 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 ||||| || | |||||| || ||||| || || || ||||| || || ||||| |||| Sbjct 13711143 GCAAAGATCAACCTCTGCTGGTCAGGGGG-ATGCCCTCTTTTTCTTGGATCTTCCCTTTG 13711085 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 ||||| || | ||| || || || || ||||| || || || ||||||||||| | || Sbjct 13711084 ACATTCTCGATGGTGTCACTGGGCTCCACCTCCAGAGTGATGGTCTTACCAGTCAAGGTC 13711025 Query 104543 TTTACAAATATCTGCATT 104560 || ||||| ||||||||| Sbjct 13711024 TTCACAAAGATCTGCATT 13711007 Score = 131 bits (144), Expect = 4e-25 Identities = 147/197 (75%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || || |||||||| || || | ||||| ||||| || ||| | || || || || Sbjct 11742998 GTTGACTCTTTCTGGATGTTGTTATCAGAAAGAGTGTGGCCCTCTCCCAGCTGCTTGCCT 11743057 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 ||||| || |||||||||| ||||| || || || ||||||||||| ||||| || || Sbjct 11743058 GCAAAGATGAGCCTCTGTTTTTCAGGTGGGATGCCCTCTTTATCCTGGATCTTGGCCTTC 11743117 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 ||||| || | |||||| ||||| || ||||| || | || ||||| |||| || ||| Sbjct 11743118 ACATTCTCGATGGTATCTCTAGGCTCCACCTCCAGGATGATGGTCTTGACAGTCAGGGTT 11743177 Query 104543 TTTACAAATATCTGCAT 104559 || | || |||||||| Sbjct 11743178 TTCATGAAGATCTGCAT 11743194 >seq1 Length=122647182 Score = 131 bits (144), Expect = 4e-25 Identities = 151/201 (75%), Gaps = 2/201 (1%) Strand=Plus/Plus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || ||||| || ||||| || |||||||| ||| | || ||||| ||||| || ||| Sbjct 30551904 GTGGATTCCTTTTGAATGTTGTAGTCAGACTGAGCACACCCATCTTCCAGTTGCTTGCCA 30551963 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 ||||| || ||||| |||| |||| | ||||||| ||||| |||||||| || ||| Sbjct 30551964 GCAAAGTCCAGTCTCTGCTGATGAGGAAGAATTCCTTTCTTATC-TGAATCTTGGCCTTT 30552022 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 ||||||||||| ||||| || || ||| || || |||||||| || | ||| ||| Sbjct 30552023 ACATTTTCTACTGTATCTGAGGGCTCAGTCTCAAGAGTGATAGTCTT-CCCGCAAGGGTT 30552081 Query 104543 TTTACAAATATCTGCATTTTG 104563 || | || |||||||| ||| Sbjct 30552082 TTCATGAAAATCTGCATCTTG 30552102 Score = 125 bits (138), Expect = 2e-23 Identities = 146/197 (74%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || || || ||||| || || ||||| || || || | || ||||| || ||||| || Sbjct 14843748 GTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGTCCATCTTCCAGCTGTTTGCCG 14843807 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 ||||| || | |||||| || ||||| || || || ||||| || || ||||| |||| Sbjct 14843808 GCAAAGATCAACCTCTGCTGGTCAGGGGGGATGCCCTCTTTTTCTTGGATCTTCCCTTTG 14843867 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 ||||| || | ||| || || || || ||||| || || || ||||||||||| | || Sbjct 14843868 ACATTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTACCAGTCAAGGTC 14843927 Query 104543 TTTACAAATATCTGCAT 104559 || || || |||||||| Sbjct 14843928 TTCACGAAGATCTGCAT 14843944 Score = 111 bits (122), Expect = 4e-19 Identities = 139/191 (73%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 104369 TCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAA 104428 |||||||| || || || ||||| || || | || ||||| || | || || ||||| Sbjct 93586483 TCTTTCTGGATGTTGTAATCAGAAAGGGTGCGGCCATCTTCCAGCTTCTTGCCTGCAAAG 93586542 Query 104429 ATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTT 104488 || |||||||| || |||||||| || ||| ||||||| || ||||| | || |||||| Sbjct 93586543 ATGAGCCTCTGCTGGTCAGGAGGGATGCCTCCTTTATCTTGGATCTTGGTCTTCACATTT 93586602 Query 104489 TCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACA 104548 || ||| || || || || ||||| || || || || || | | || || || | Sbjct 93586603 TCGTTGGTGTCACTGGGCTCAACCTCCAGGGTGATGGTATTGCAGGCCAGGGTCTTCATG 93586662 Query 104549 AATATCTGCAT 104559 ||||||||||| Sbjct 93586663 AATATCTGCAT 93586673 >seq35 Length=77559626 Score = 127 bits (140), Expect = 5e-24 Identities = 147/197 (75%), Gaps = 1/197 (1%) Strand=Plus/Plus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || || |||||||| || || || ||||| ||||| | || ||||| || || || || Sbjct 46120184 GTTGACTCTTTCTGGATGTTGTAATCAGAAAGAGTGCAGCCATCTTCCAGCTGCTTACCT 46120243 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 |||| || |||||||| || ||||| || | || ||||||||||| ||||| || || Sbjct 46120244 GCAACGATGAGCCTCTGCTGGTCAGGGGGG-TGCCCTCTTTATCCTGGATCTTGGCCTTC 46120302 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 |||||||| | ||| || || || || ||||| || ||||| ||||| | || || || Sbjct 46120303 ACATTTTCAATGGTGTCACTGGGCTCCACCTCCAGGGTAATGGTCTTGCAGGTCAGGGTC 46120362 Query 104543 TTTACAAATATCTGCAT 104559 || | || |||||||| Sbjct 46120363 TTCAGGAAGATCTGCAT 46120379 >seq14 Length=50855280 Score = 122 bits (134), Expect = 2e-22 Identities = 145/197 (74%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || || |||||||| || || | ||||| ||||| || ||||| || || || || Sbjct 29349307 GTTGACTCTTTCTGGATGTTGTCATCAGAAAGAGTGTGGCCATCTTCCAGCTGCTTGCCT 29349248 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 ||||| || |||||||| || ||||| || || || ||||||||||| ||||| || || Sbjct 29349247 GCAAAGATGAGCCTCTGCTGGTCAGGGGGGATGCCCTCTTTATCCTGGATCTTGGCCTTC 29349188 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 |||||||| | ||| || | || || ||||| || | || ||||| | || || || Sbjct 29349187 ACATTTTCGATGGTGTCATTGGGCTCCACCTCCAGGATGATGGTCTTGCTGGTCAGGGTC 29349128 Query 104543 TTTACAAATATCTGCAT 104559 || || || |||||||| Sbjct 29349127 TTCACGAAGATCTGCAT 29349111 >seq39 Length=123855249 Score = 116 bits (128), Expect = 9e-21 Identities = 108/137 (79%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || || || || ||||| || ||||||| | ||| | || || || ||||| || ||| Sbjct 84732054 GTGGACTCCTTTTGAATGTTGTAGTCAGGCAAAGTACGGCCATCCTCCAGTTGCTTGCCA 84731995 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 ||||| || || ||||| ||||||||||| |||||||| |||||| ||||||| || ||| Sbjct 84731994 GCAAATATCAGTCTCTGCTGATCAGGAGGGATTCCTTCCTTATCCAGAATCTTGGCCTTT 84731935 Query 104483 ACATTTTCTACGGTATC 104499 ||||||||| ||||| Sbjct 84731934 TCATTTTCTATCGTATC 84731918 >seq5 Length=63240551 Score = 114 bits (126), Expect = 3e-20 Identities = 107/136 (79%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 269126 GGAGAAAGGTTAGTTGCTTTTGCCGCTGTAGAAGGTATATTCTTTTCGGGGTCTTTTGCC 269185 || ||||| | || |||||||| ||||||||||| || ||||| || || |||||||| Sbjct 3816847 GGGGAAAGAGTCGTGGCTTTTGCTGCTGTAGAAGGGATTTTCTTCTCTGGATCTTTTGCT 3816788 Query 269186 GCTATCTTTTGGTTGAAGAAAAGAGGCCTTATGCCAGGATTAACTTTCTCTAACGAATTG 269245 ||||| || ||| | ||||||||||| || ||||| ||| | ||||| || || ||| | Sbjct 3816787 GCTATATTCTGGCTAAAGAAAAGAGGTCTCATGCCTGGACTCACTTTTTCCAATGAACTC 3816728 Query 269246 ATAAGCAGGGACGAAG 269261 || ||||| || |||| Sbjct 3816727 ATCAGCAGAGATGAAG 3816712 >seq18 Length=51628521 Score = 98.7 bits (108), Expect = 2e-15 Identities = 97/123 (79%), Gaps = 3/123 (2%) Strand=Plus/Plus Query 104369 TCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAA 104428 || || ||||| || | |||||| || | | || | ||| ||||| || |||||||| Sbjct 524959 TCATTTTGAATGTTGT-GTCAGAAAG--TACGTCCATATTCCAGTTGCTTGCCAGCAAAG 525015 Query 104429 ATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTT 104488 || || ||||| | ||||||||| |||||||| |||||||| ||||| || ||||||||| Sbjct 525016 ATCAGTCTCTGCTCATCAGGAGGAATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTT 525075 Query 104489 TCT 104491 ||| Sbjct 525076 TCT 525078 >seq9 Length=64259867 Score = 89.7 bits (98), Expect = 1e-12 Identities = 100/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 269126 GGAGAAAGGTTAGTTGCTTTTGCCGCTGTAGAAGGTATATTCTTTTCGGGGTCTTTTGCC 269185 |||||| || | || || ||||| || || ||||| || ||||||||||| |||||||| Sbjct 7102906 GGAGAACGGGTTGTGGCCTTTGCTGCCGTGGAAGGAATCTTCTTTTCGGGTTCTTTTGCG 7102965 Query 269186 GCTATCTTTTGGTTGAAGAAAAGAGGCCTTATGCCAGGATTAACTTTCTCTAACGAATTG 269245 | || || ||| | |||||| | ||||| ||||| || | || || || || ||| | Sbjct 7102966 TCAATATTCTGGCTCAAGAAACGGGGCCTGATGCCTGGCCTCACGTTTTCCAATGAACTT 7103025 Query 269246 ATAAGCAGGGACGA 269259 || ||||| || || Sbjct 7103026 ATTAGCAGAGATGA 7103039 Score = 84.2 bits (92), Expect = 5e-11 Identities = 105/144 (73%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 269492 GTTGAAAATCCGTTTAGTTTTATGGAGAATATATCATTAGAAGGTAAGGCTAATTTCTTC 269551 || |||||||| ||| |||||||||||||| ||| | ||||| ||| |||| ||||| Sbjct 7104320 GTAGAAAATCCATTTGACTTTATGGAGAATATTTCACTGGAAGGGAAGACTAACTTCTTT 7104379 Query 269552 GAGAAGCGGGTAAGTAACTATCAGAAAATGGGTGTAATGTCTACTAAAGAAGAAAATATT 269611 |||||| | ||| | | ||||||| ||||| || ||||| | | | ||| ||| Sbjct 7104380 GAGAAGAGAGTAGGCGAGTATCAGAGGATGGGAGTGATGTCAAGTCCAACAGAGAATTCG 7104439 Query 269612 TTCACTACAGATGCAGAATTCTAA 269635 || || ||||| || |||||| Sbjct 7104440 TTTACCTTGGATGCTGACTTCTAA 7104463 >seq15 Length=61382224 Score = 87.8 bits (96), Expect = 4e-12 Identities = 118/163 (72%), Gaps = 5/163 (3%) Strand=Plus/Minus Query 104402 CCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCT 104461 || ||||| ||||| || |||||||| || |||| | |||| ||| |||||||| Sbjct 20784976 CCATCTTCCAGTTGCTT----GCAAAAATCAGTGTCTGCTAATCAAGAGAAATTCCTTCC 20784921 Query 104462 TTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTA 104521 || ||||| ||||| | ||||||||||||| |||| ||||| |||| || | Sbjct 20784920 TTGTCCTGGATCTTGGTCTTTACATTTTCTATTGTATTTGGGGGTTCAACCTTAAGAATG 20784861 Query 104522 ATAGTCTTACCAGTAAG-TGTTTTTACAAATATCTGCATTTTG 104563 || ||||| || |||| | |||| | || |||||||| ||| Sbjct 20784860 ATGGTCTTCCCCATAAGATTTTTTCATGAAAATCTGCATCTTG 20784818 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151386553909524