Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lycaon_20pictus_20[genbank_20GCA_5F001887905.1_202016-12-01] 803 sequences; 2,358,143,818 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq33 120 3e-22 seq19 104 2e-17 seq1 104 2e-17 seq34 82.4 6e-11 >seq33 Length=88276357 Score = 120 bits (132), Expect = 3e-22 Identities = 164/228 (72%), Gaps = 1/228 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || ||||| || || || || ||||| || ||||||| || ||||| ||| Sbjct 13711008 ATGCAGATCTTTGTGAAGACCTTGACTGGTAAGACCATCACTCTGGAGGTGGAGCCCAGT 13711067 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | || || ||||| || || ||||| || ||||| || || || || || Sbjct 13711068 GACACCATCGAGAATGTCAAAGGGAAGATCCAAGAAAAAGAGGGCATCCC-CCTGACCAG 13711126 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || | | || ||||||||||||||| | || ||| |||||| | |||| |||||| Sbjct 13711127 CAGAGGTTGATCTTTGCCGGCAAACAGCTGGAAGATGGGCGCACCCTACCCGACTACAAC 13711186 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 || || || |||||||| | || || || |||| ||| | |||||| Sbjct 13711187 ATCCAGAAGGAATCCACTCTGCACTTGGTCCTGCGCTTGAGGGGAGGT 13711234 >seq19 Length=38964370 Score = 104 bits (114), Expect = 2e-17 Identities = 141/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || || || || || || || ||||| || ||||||| || ||||| ||| Sbjct 5007176 ATGCAGATCTTCGTGAAGACCTTGACGGGTAAGACCATCACTCTGGAGGTGGAGCCCAGT 5007235 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | || | |||| || || || ||||||||||| || || || || || Sbjct 5007236 GACACCATCGAGAACGTCAAGGCGAAGATCCAGGACAAGGAGGGCATCCCCCCTGACCAG 5007295 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || | | || ||||||||||||||| | || ||| |||||| | ||||| |||||| Sbjct 5007296 CAGAGGTTGATCTTTGCCGGCAAACAGCTGGAAGATGGGCGCACCCTGTCCGACTACAAC 5007355 Query 22399 ATTCAAAAAGAATCCAC 22415 || || || || ||||| Sbjct 5007356 ATCCAGAAGGAGTCCAC 5007372 >seq1 Length=122647182 Score = 104 bits (114), Expect = 2e-17 Identities = 152/215 (71%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || || || || || || || ||||| || |||| || || ||||| ||| Sbjct 14843944 ATGCAGATCTTCGTGAAGACCTTGACTGGTAAGACCATCACCCTGGAGGTGGAGCCCAGT 14843885 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | || || ||||| || || ||||| || ||||| || || || || || Sbjct 14843884 GACACCATCGAGAATGTCAAAGGGAAGATCCAAGAAAAAGAGGGCATCCCCCCTGACCAG 14843825 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || | | || ||||||||||||||| | || ||| |||||| | ||||| |||||| Sbjct 14843824 CAGAGGTTGATCTTTGCCGGCAAACAGCTGGAAGATGGACGCACCCTGTCCGACTACAAC 14843765 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCG 22433 || || || || ||||| | || || || |||| Sbjct 14843764 ATCCAGAAGGAGTCCACTCTGCACTTGGTCCTGCG 14843730 >seq34 Length=88915096 Score = 82.4 bits (90), Expect = 6e-11 Identities = 140/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 22213 GTAAAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAA 22272 || || ||||| || || || ||||| | ||||| || || |||| || || ||||| Sbjct 47887682 GTCAAAATGCAGATCTTCGTGAAAACCCTGACCGGCAAGACCATCACCCTGGAGGTGGAG 47887741 Query 22273 ACCACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCC 22332 ||| || ||| | || | | || || || || || || ||||| || || || Sbjct 47887742 CCCAGTGACACCATCGAAAACGTGAAGGCCAAGATCCAGGATAAAGAGGGCATCCCCCCT 47887801 Query 22333 GATCAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGAT 22392 || || || | || || ||||| ||||| ||| | || ||| |||||| | || ||| Sbjct 47887802 GACCAGCAGAGGCTCATCTTTGCAGGCAAGCAGCTGGAAGATGGCCGCACTCTTTCTGAT 47887861 Query 22393 TACAACATTCAAAAAGAATCCAC 22415 |||||||| || ||||| || || Sbjct 47887862 TACAACATCCAGAAAGAGTCAAC 47887884 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419723892305695