Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lycaon_20pictus_20[genbank_20GCA_5F001887905.1_202016-12-01] 803 sequences; 2,358,143,818 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq34 127 5e-24 seq36 113 1e-19 seq14 102 2e-16 seq35 93.3 1e-13 seq33 93.3 1e-13 seq1 93.3 1e-13 >seq34 Length=88915096 Score = 127 bits (140), Expect = 5e-24 Identities = 145/195 (74%), Gaps = 0/195 (0%) Strand=Plus/Minus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 ||||| ||||| || || || | || ||||| || ||||| | || || ||||| ||| Sbjct 47887878 TCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATCTTCCAGCTGCTTGCCTGCAAAG 47887819 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 || || | ||| || | ||||| || |||||||||||||| || || ||||||||| Sbjct 47887818 ATGAGCCTCTGCTGGTCAGGGGGGATGCCCTCTTTATCCTGGATCTTGGCCTTCACGTTT 47887759 Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462 || || | || || | || || || || ||||| ||||| |||||||| || || ||| Sbjct 47887758 TCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTGCCGGTCAGGGTTTTCACG 47887699 Query 288463 AATATCTGCATTATG 288477 || ||||||||| || Sbjct 47887698 AAGATCTGCATTTTG 47887684 >seq36 Length=80974255 Score = 113 bits (124), Expect = 1e-19 Identities = 162/227 (71%), Gaps = 1/227 (0%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| || || | ||| || | || | ||| ||||| || ||||| ||||| | Sbjct 43111083 CCACCTCGCAGGCGAAGCACCAAGTGCAAGGTGGACTCTTTCTG-ATATTGTAGTCTGAC 43111141 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || || || || ||||||| ||||| || || || ||||||||||| || | |||| Sbjct 43111142 AGAGTTCGGCCATCTTCTAGCTGTTTGCCCGCAAAAATCAGACGCTGCTGGTCAGGTGGG 43111201 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 || || ||||| || |||||||| ||||| || ||||| | | || || | || || Sbjct 43111202 ATGCCCTCTTTGTCTTGGATTTTGGCTTTGACATTTTCAGTGGTGTCACTGGGCTCGACC 43111261 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || ||||| || || || |||| ||||| || || |||||||| Sbjct 43111262 TCAAGGGTGATAGTTTTGCCCATCAGGGTCTTCACAAAGATCTGCAT 43111308 >seq14 Length=50855280 Score = 102 bits (112), Expect = 2e-16 Identities = 137/191 (72%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 ||||| ||||| || | || | || ||| | || ||||| | || || ||||| ||| Sbjct 29349301 TCTTTCTGGATGTTGTCATCAGAAAGAGTGTGGCCATCTTCCAGCTGCTTGCCTGCAAAG 29349242 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 || || | ||| || | ||||| || |||||||||||||| || || ||||| ||| Sbjct 29349241 ATGAGCCTCTGCTGGTCAGGGGGGATGCCCTCTTTATCCTGGATCTTGGCCTTCACATTT 29349182 Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462 || || | || | | || || || || |||| ||||| | |||||| ||||| ||| Sbjct 29349181 TCGATGGTGTCATTGGGCTCCACCTCCAGGATGATGGTCTTGCTGGTCAGGGTCTTCACG 29349122 Query 288463 AATATCTGCAT 288473 || |||||||| Sbjct 29349121 AAGATCTGCAT 29349111 >seq35 Length=77559626 Score = 93.3 bits (102), Expect = 1e-13 Identities = 136/191 (71%), Gaps = 1/191 (1%) Strand=Plus/Plus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 ||||| ||||| || || || | || |||| || ||||| | || || ||||| | | Sbjct 46120190 TCTTTCTGGATGTTGTAATCAGAAAGAGTGCAGCCATCTTCCAGCTGCTTACCTGCAACG 46120249 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 || || | ||| || | ||| | || |||||||||||||| || || ||||| ||| Sbjct 46120250 ATGAGCCTCTGCTGGTCAGGGGGG-TGCCCTCTTTATCCTGGATCTTGGCCTTCACATTT 46120308 Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462 || || | || || | || || || || || || ||||| | |||||| ||||| | | Sbjct 46120309 TCAATGGTGTCACTGGGCTCCACCTCCAGGGTAATGGTCTTGCAGGTCAGGGTCTTCAGG 46120368 Query 288463 AATATCTGCAT 288473 || |||||||| Sbjct 46120369 AAGATCTGCAT 46120379 >seq33 Length=88276357 Score = 93.3 bits (102), Expect = 1e-13 Identities = 135/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 ||||| ||||| || | || | || ||| | || ||| | | || || ||||| ||| Sbjct 11743004 TCTTTCTGGATGTTGTTATCAGAAAGAGTGTGGCCCTCTCCCAGCTGCTTGCCTGCAAAG 11743063 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 || || | ||||| | |||||| || |||||||||||||| || || ||||| || Sbjct 11743064 ATGAGCCTCTGTTTTTCAGGTGGGATGCCCTCTTTATCCTGGATCTTGGCCTTCACATTC 11743123 Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462 || || | ||| || | || || || || |||| ||||| | ||||| || || | | Sbjct 11743124 TCGATGGTATCTCTAGGCTCCACCTCCAGGATGATGGTCTTGACAGTCAGGGTTTTCATG 11743183 Query 288463 AATATCTGCAT 288473 || |||||||| Sbjct 11743184 AAGATCTGCAT 11743194 >seq1 Length=122647182 Score = 93.3 bits (102), Expect = 1e-13 Identities = 135/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 ||||| ||||| || || || | || ||||| || ||||| | | || ||||| ||| Sbjct 93586483 TCTTTCTGGATGTTGTAATCAGAAAGGGTGCGGCCATCTTCCAGCTTCTTGCCTGCAAAG 93586542 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 || || | ||| || | ||||| ||| ||||||| ||||| || | ||||| ||| Sbjct 93586543 ATGAGCCTCTGCTGGTCAGGAGGGATGCCTCCTTTATCTTGGATCTTGGTCTTCACATTT 93586602 Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462 || | | || || | || || || || ||||| || || | || ||| ||||| | | Sbjct 93586603 TCGTTGGTGTCACTGGGCTCAACCTCCAGGGTGATGGTATTGCAGGCCAGGGTCTTCATG 93586662 Query 288463 AATATCTGCAT 288473 ||||||||||| Sbjct 93586663 AATATCTGCAT 93586673 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179642263199434