Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lycaon_20pictus_20[genbank_20GCA_5F001887905.1_202016-12-01] 803 sequences; 2,358,143,818 total letters Query= NC_013756.1 Length=368454 Score E Sequences producing significant alignments: (Bits) Value seq34 141 2e-28 seq19 125 2e-23 seq33 116 9e-21 seq1 113 1e-19 seq14 111 4e-19 seq39 107 5e-18 seq35 107 5e-18 seq36 93.3 1e-13 >seq34 Length=88915096 Score = 141 bits (156), Expect = 2e-28 Identities = 159/212 (75%), Gaps = 3/212 (1%) Strand=Plus/Minus Query 199424 AGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGC 199483 ||||||||||| ||||| || |||| |||||| |||| | ||| | |||||||||||| Sbjct 47887893 AGGTGGAGAGTTGACTCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATCTTCCAGC 47887834 Query 199484 TGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATC 199543 ||||| || || |||||||| | ||||||||| || || || ||| ||||| ||| Sbjct 47887833 TGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGGGGGATGCCCTCTTTATCCTGGATC 47887774 Query 199544 TTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCC 199603 || ||||||| ||||| |||||| | | || || |||| ||||| ||||| || Sbjct 47887773 TTGGCCTTCACGTTTTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTGCCG 47887714 Query 199604 GTGAGAGTTTTCACAAAAATTTGGTACATTTT 199635 || || |||||||| || || || |||||| Sbjct 47887713 GTCAGGGTTTTCACGAAGATCTG---CATTTT 47887685 >seq19 Length=38964370 Score = 125 bits (138), Expect = 2e-23 Identities = 153/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 ||||| ||||| ||||| |||||||| |||| ||||||||| | || || | |||||| Sbjct 5007387 AGGACCAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGCCCATCT 5007328 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 |||||||| || ||||| ||||| | | ||||||||| || || || || ||| Sbjct 5007327 TCCAGCTGTTTGCCGGCAAAGATCAACCTCTGCTGGTCAGGGGGGATGCCCTCCTTGTCC 5007268 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 || ||||| ||| ||| |||| |||||| | | || || |||| ||||| ||| Sbjct 5007267 TGGATCTTCGCCTTGACGTTCTCGATGGTGTCACTGGGCTCCACCTCCAGAGTGATGGTC 5007208 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626 |||||||| | || ||||| || || || Sbjct 5007207 TTACCCGTCAAGGTCTTCACGAAGATCTG 5007179 >seq33 Length=88276357 Score = 116 bits (128), Expect = 9e-21 Identities = 151/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 ||||| ||||| ||||| |||||||| |||| ||||||||| | || || | |||||| Sbjct 13710990 AGGACCAGGTGCAGAGTTGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCACCCATCT 13710931 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 |||||||| || | ||| ||||| | | ||||||||| || || ||||| ||| Sbjct 13710930 TCCAGCTGTTTGCTGGCAAAGATCAACCTCTGCTGGTCAGGGGGGATGCCTTCCTTGTCC 13710871 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 || |||||| ||| || |||| |||||| | | || || |||| || || ||| Sbjct 13710870 TGGATCTTTGCCTTGACATTCTCGATGGTGTCATTGGGCTCCACCTCCAGAGTAATGGTC 13710811 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| || | || ||||| || || || Sbjct 13710810 TTACCAGTCAAGGTCTTCACGAAGATCTG 13710782 Score = 100 bits (110), Expect = 7e-16 Identities = 149/210 (71%), Gaps = 1/210 (0%) Strand=Plus/Minus Query 199417 CAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATC 199476 |||||| | ||| ||||| || ||||| |||| ||||||||| | | || | ||||| Sbjct 13711219 CAGGACCAAGTGCAGAGTGGATTCCTTCTGGATGTTGTAGTCGGGTAGGGTGCGCCCATC 13711160 Query 199477 TTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTC 199536 ||||||||| || ||||| ||||| | | ||||||||| || || || ||| || Sbjct 13711159 TTCCAGCTGTTTGCCGGCAAAGATCAACCTCTGCTGGTCAGG-GGGATGCCCTCTTTTTC 13711101 Query 199537 CTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGT 199596 || ||||| || || |||| |||||| | | || || |||| ||||| || Sbjct 13711100 TTGGATCTTCCCTTTGACATTCTCGATGGTGTCACTGGGCTCCACCTCCAGAGTGATGGT 13711041 Query 199597 CTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 |||||| || | || |||||||| || || Sbjct 13711040 CTTACCAGTCAAGGTCTTCACAAAGATCTG 13711011 >seq1 Length=122647182 Score = 113 bits (124), Expect = 1e-19 Identities = 151/210 (72%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 199417 CAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATC 199476 |||||| | ||| ||||| |||||||| |||| ||||||||| | || || | |||||| Sbjct 14843732 CAGGACCAAGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGTCCATC 14843791 Query 199477 TTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTC 199536 ||||||||| || ||||| ||||| | | ||||||||| || || || ||| || Sbjct 14843792 TTCCAGCTGTTTGCCGGCAAAGATCAACCTCTGCTGGTCAGGGGGGATGCCCTCTTTTTC 14843851 Query 199537 CTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGT 199596 || ||||| || || |||| |||||| | | || || |||| ||||| || Sbjct 14843852 TTGGATCTTCCCTTTGACATTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGT 14843911 Query 199597 CTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 |||||| || | || ||||| || || || Sbjct 14843912 CTTACCAGTCAAGGTCTTCACGAAGATCTG 14843941 Score = 98.7 bits (108), Expect = 2e-15 Identities = 154/218 (71%), Gaps = 2/218 (1%) Strand=Plus/Plus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 |||||||||| ||| || ||||| || |||||||| | ||||||||||| | || Sbjct 30551880 CGAAGTCTCAACACACCATGAAGAGTGGATTCCTTTTGAATGTTGTAGTCAGACTGAGCA 30551939 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | ||||||||||| ||||| || || ||| || | |||||| | |||| ||||||| Sbjct 30551940 CACCCATCTTCCAGTTGCTTGCCAGCAAAGTCCAGTCTCTGCTGATGAGGAAGAATTCCT 30551999 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 | || ||||||||| ||| || ||| || || |||| | || || | Sbjct 30552000 T-TCTTATCTGAATCTTGGCCTTTACATTTTCTACTGTATCTGAGGGCTCAGTCTCAAGA 30552058 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| ||||| |||| || ||||||| ||||| || Sbjct 30552059 GTGATAGTCTT-CCCGCAAGGGTTTTCATGAAAATCTG 30552095 Score = 89.7 bits (98), Expect = 1e-12 Identities = 123/172 (72%), Gaps = 0/172 (0%) Strand=Plus/Plus Query 199428 GGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGCT 199487 ||||||| |||| || |||| |||||| |||| | || | ||||||||||||| || Sbjct 93586472 GGAGAGTTAACTCTTTCTGGATGTTGTAATCAGAAAGGGTGCGGCCATCTTCCAGCTTCT 93586531 Query 199488 TTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTTT 199547 | || || |||||||| | ||||||||| ||| || ||| || || || ||||| Sbjct 93586532 TGCCTGCAAAGATGAGCCTCTGCTGGTCAGGAGGGATGCCTCCTTTATCTTGGATCTTGG 93586591 Query 199548 GCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTT 199599 |||||| |||| |||||| | | || || |||| ||||| || || Sbjct 93586592 TCTTCACATTTTCGTTGGTGTCACTGGGCTCAACCTCCAGGGTGATGGTATT 93586643 >seq14 Length=50855280 Score = 111 bits (122), Expect = 4e-19 Identities = 150/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 || || |||| |||||| ||||| || |||| ||||| |||| | ||| |||||| Sbjct 29349322 AGAACCAGGTAGAGAGTTGACTCTTTCTGGATGTTGTCATCAGAAAGAGTGTGGCCATCT 29349263 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 ||||||||||| || || |||||||| | ||||||||| || || || ||| ||| Sbjct 29349262 TCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGGGGGATGCCCTCTTTATCC 29349203 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 || ||||| |||||| ||||| |||||| | | || || |||| |||| ||| Sbjct 29349202 TGGATCTTGGCCTTCACATTTTCGATGGTGTCATTGGGCTCCACCTCCAGGATGATGGTC 29349143 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || | || || || ||||| || || || Sbjct 29349142 TTGCTGGTCAGGGTCTTCACGAAGATCTG 29349114 >seq39 Length=123855249 Score = 107 bits (118), Expect = 5e-18 Identities = 106/137 (77%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 |||||||||| ||||| || |||| ||||||||||| | ||||||||||| |||||| Sbjct 84732078 CGAAGTCTCAACACAAGATGAGGAGTGGACTCCTTTTGAATGTTGTAGTCAGGCAAAGTA 84732019 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | ||||| ||||| ||||| || || || || || | |||||| || ||| |||||| Sbjct 84732018 CGGCCATCCTCCAGTTGCTTGCCAGCAAATATCAGTCTCTGCTGATCAGGAGGGATTCCT 84731959 Query 199529 TCTCGCTCCTGAATCTT 199545 || ||| ||||||| Sbjct 84731958 TCCTTATCCAGAATCTT 84731942 >seq35 Length=77559626 Score = 107 bits (118), Expect = 5e-18 Identities = 144/199 (72%), Gaps = 1/199 (1%) Strand=Plus/Plus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 |||||||||| |||||| ||||| || |||| |||||| |||| | ||| | |||||| Sbjct 46120169 AGGACAAGGTAGAGAGTTGACTCTTTCTGGATGTTGTAATCAGAAAGAGTGCAGCCATCT 46120228 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 ||||||||||| || || | |||||| | ||||||||| || | || ||| ||| Sbjct 46120229 TCCAGCTGCTTACCTGCAACGATGAGCCTCTGCTGGTCAGG-GGGGTGCCCTCTTTATCC 46120287 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 || ||||| |||||| ||| | |||||| | | || || |||| || || ||| Sbjct 46120288 TGGATCTTGGCCTTCACATTTTCAATGGTGTCACTGGGCTCCACCTCCAGGGTAATGGTC 46120347 Query 199598 TTACCCGTGAGAGTTTTCA 199616 || | || || || |||| Sbjct 46120348 TTGCAGGTCAGGGTCTTCA 46120366 >seq36 Length=80974255 Score = 93.3 bits (102), Expect = 1e-13 Identities = 81/101 (80%), Gaps = 0/101 (0%) Strand=Plus/Plus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 || || ||||||||||| ||||| || |||| |||||| |||| | ||| |||||| Sbjct 2307103 AGAACCAGGTGGAGAGTTGACTCTTTCTGGATGTTGTAATCAGAAACAGTGTGGCCATCT 2307162 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGG 199518 ||||||||||| || || |||||||| | ||||||||| || Sbjct 2307163 TCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGG 2307203 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1178909470738801