Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lycaon_20pictus_20[genbank_20GCA_5F001887905.1_202016-12-01] 803 sequences; 2,358,143,818 total letters Query= NC_020474.2 Length=180421 Score E Sequences producing significant alignments: (Bits) Value seq1 320 2e-82 seq27 122 1e-22 seq4 102 9e-17 >seq1 Length=122647182 Score = 320 bits (354), Expect = 2e-82 Identities = 660/981 (67%), Gaps = 3/981 (0%) Strand=Plus/Plus Query 160052 CAGATGTTCGTCCAGACATTGGACGGCGAACACGTCAACGTCTTCGTCGAATTTATTTGC 160111 |||||| || || | ||| |||| ||| || | ||||| |||| ||| || || || || Sbjct 81958167 CAGATGCTCATCTAAACACTGGATGGCAAAGAGGTCAATGTCTGTGTCAAACTTGTTGGC 81958226 Query 160112 GAACAGATGGTGAGCGTTCTGTAGGATCCAGTGCACGTCTCCGGACCCGAACACGCAGAC 160171 |||| ||||| || |||| ||||||| || ||| || | ||||| || || || Sbjct 81958227 AAACAAGTGGTGC---TTGCGTAGCATCCAGTTCAAGTCACCTGCTCCGAAAACACACAC 81958283 Query 160172 GGAACGTATGTGCACGCCGTTGCAAGGCGGGTACAGAGCTCCTTTCGCCACGTCACCTTC 160231 ||||| | || || || |||| || ||||| | || || || | || |||||||| Sbjct 81958284 AGAACGCACATGGACCCCACTGCACGGTGGGTAGGGGGCACCCTTAGAAACATCACCTTC 81958343 Query 160232 GTAGTACTGCCACTTCACAAACCTGGCTATCGCCTGCATGTCGGAGGTGTCGTATTTGTA 160291 |||||||||| || |||||||| || || || |||||||| || |||| || || | Sbjct 81958344 AAAGTACTGCCATTTGACAAACCTTGCGATTGCATGCATGTCAGACATGTCATACTTCTG 81958403 Query 160292 CATCAGGGGAACGGCACCGGGAACGCCGGGCATACGCTGTAGGGTGGCCCACAGGTGTTC 160351 | | || | | || || || | || || | ||| | |||||||| |||| || Sbjct 81958404 GCTTAAGGACAGCGAGCCTGGGACTTCAGGGATCCTCTGAATAGTGGCCCAGAGGTACTC 81958463 Query 160352 GTCGGGGCTGTACGTGTCCTTAGACCATTCCATGAACTCTCCGATTAACCTGTCCCGCAG 160411 || |||||||| ||||| || | ||| ||||| |||| | |||| | | || Sbjct 81958464 ATCAGGGCTGTATGTGTCTTTTGCCCACTCCATAAACTTTTGGATTTTTTCATTCTTTAG 81958523 Query 160412 AACGTGAGTAACGTAGGATCTGGTCACGACAAAGTACGCGCTGCCGGAGAATATCGGTAT 160471 || | || || || | || ||||| || || ||||| || |||| ||| | Sbjct 81958524 CACATATTCTACATACTTCCTACTGACCACAAAATAAGCACTGCCTGAAAATAGAGGTGT 81958583 Query 160472 GGGTATAGGCGGCGTGTCTTTGTCCTGACCGGTGTTAGACACCACTCCTTTCACCAGCGC 160531 | ||| || |||||| || ||||| | || | ||| || || | | Sbjct 81958584 TTCAAGAGGTGGATGCATTTTGTCAGTCCCTGTGTTGGTCAGCTTTCCATTAACAACTGT 81958643 Query 160532 GTGTCGCTTCTTCCACCTGACCATCTTGTGCGGTGGCATGCGTTCCGTCTCTAGACTGTT 160591 |||| |||||||| | | |||| | |||||| | || || ||||| |||| Sbjct 81958644 AAAATGCTTTTTCCACCTTTCTTTTTTGTTGGATGGCATTCTCTCAGTTTCTAGGTTGTT 81958703 Query 160592 GGCACCGTCGAGCGATTTCAGCTGCTTGACGATCTCTAGGTTCGTCTTGAGCGGAAAGTC 160651 |||| |||||||| |||| | ||| || || | ||| || |||| ||||| || Sbjct 81958704 TTCACCCATTAGCGATTTGAGCTTCCGGACAATTTCCAAGTTGGTTTTGATAGGAAAATC 81958763 Query 160652 GGTACCGCACAAGTTTATCACGTACTTCCATTTCGCGCTCAGGTCGTGCAGGTCCCTCAT 160711 | || || | ||||||| ||||||||| | || |||| || |||||| ||| Sbjct 81958764 CATGCCACAAAGATTTATCAAGTACTTCCAGTCTGCACTCATCCTATGGAGGTCCTGCAT 81958823 Query 160712 GCAATTAATATCTGCCTGCACGCGGCTCCAGGAAGCGTACACTACGTTCTCTAGTTTACT 160771 ||| || | || ||||| || || ||||| || || || || || ||||||| | ||| Sbjct 81958824 GCAGTTGAGGTCAGCCTGAACTCGACTCCATGAGGCATATACCACACTCTCTAGCTGACT 81958883 Query 160772 GGCCACAAAGACGTTATCGAAACACGACACGATTCCCACCACCGCCAGAAAGAACATCTT 160831 |||||| |||| |||| ||| || ||| | || || | ||| || ||||| | Sbjct 81958884 GGCCACGAAGATGTTACTGAAGCAGGACGCAATGCCAAGCACGGCAGCCAAGAAGGAATC 81958943 Query 160832 ATCCGCCTTTCGGTCCACGTGCACGCAATACAGGTTCTGAGGCGCGTAGATGGCCCTGAG 160891 || | ||| ||||||||| | ||| || | ||||||||| |||||||||||| || Sbjct 81958944 CTCGGATTTTTTGTCCACGTGAATGCAGTAGAAATTCTGAGGCATGTAGATGGCCCTCAG 81959003 Query 160892 CAACCTCTCGAACATCTCTATCTTATGATGGATCACGATAGAGTAGGCTATCGGAAACTC 160951 | ||| || | |||||| || || ||||| | || ||||| || ||||| ||||| || Sbjct 81959004 GAGCCTGTCAAGCATCTCAATTTTGTGATGAACTACTATAGAATATGCTATGGGAAATTC 81959063 Query 160952 GGTCTCCTCGCGACTCAGGGACCCGGTCAGGTACTTTCGCGTCTTGATAAAATAATCACA 161011 | || || ||| |||| | | | ||| || ||| ||||||| || ||| ||| Sbjct 81959064 TGCTTCTTCTTTACTAAGGGGTTCCATGATGTATTTGCGCCTCTTGATGAACGAATTACA 81959123 Query 161012 ATCCCGCGTCATGTTGATATA 161032 ||| | |||||||| ||||| Sbjct 81959124 ATCTCTGGTCATGTTTATATA 81959144 >seq27 Length=31376848 Score = 122 bits (134), Expect = 1e-22 Identities = 150/206 (73%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 168153 AGAGTCAAGCACGTTTTTCCAGAAATCTTGCCTGATCCGAACGTGTTGAAGAGGCACATG 168212 || || | ||| | | |||| || ||||| || || || || ||||||||||||||| || Sbjct 16880258 AGGGTGAGGCAGGCTGTTCCCGAGATCTTCCCAGAACCAAAAGTGTTGAAGAGGCACTTG 16880199 Query 168213 AAGCAGCCTTCGTCCTCCACGGTGGTATTCCAAAATGTTAGCGTTGAGTTTCGGAGGCCC 168272 | || ||||| || |||| |||||||||||| || || | |||||||| ||| || Sbjct 16880198 TAACACCCTTCATCYTCCAGGGTGGTATTCCAGAAGGTAATGGTTGAGTTCTTGAGCTCC 16880139 Query 168273 AACTGCGTTATGTTCACACGATCTTTATAAGGAGGTTGAACTACAACGCCGTGGTTCTCG 168332 | ||| || | || | || || || | ||| || || || || || || |||| | Sbjct 16880138 AGCTGGGTGACATTTATCTTGTCCTTGTAGGCAGGCTGGACCACGACCCCATGATTCTTG 16880079 Query 168333 CTGAAGGTGGCCATGTTCTCCGGGCT 168358 ||||||||| ||||||| ||| |||| Sbjct 16880078 CTGAAGGTGACCATGTTTTCCAGGCT 16880053 Score = 93.3 bits (102), Expect = 5e-14 Identities = 144/205 (70%), Gaps = 3/205 (1%) Strand=Plus/Minus Query 167898 GTTACAGTTCCCAAATGTAGTACCTTGCATATCACCTCTCCGTTTCCTACTTGACTCTTT 167957 || || || |||| || || |||| ||| | ||| || || || ||||| ||||| Sbjct 16882966 GTCACTGTCCCCAGGTGCAGAACCTGGCAAACCACTTCC---TTCCCCACTTGTCTCTTG 16882910 Query 167958 GGATCTTTTACTTGTAAAATGCTAGTTACACTTGTAGTTCCATTGCGATGTAAAACGGTT 168017 |||||||| || || | | ||| || || ||| || |||||| | || || | Sbjct 16882909 GGATCTTTGACGTGGAGGACGCTTGTGACTGATGTGGTCCCATTGGGGTGCAAGAGAACC 16882850 Query 168018 TTCGTGCTGTTCTCAATCCCTGATCCTGCCACCTTCCAGAATATTACAGGAGCGGGTCGT 168077 | || ||||| ||||||||||| || || ||||||||| | || ||||| || || || Sbjct 16882849 TCAGTACTGTTTTCAATCCCTGACCCAGCGACCTTCCAGGAGATCACAGGTGCTGGGCGG 16882790 Query 168078 GCTGTAGCAGAGCAGGTAATATTTA 168102 || | ||| |||| || ||||||| Sbjct 16882789 GCATTGGCAAAGCACGTGATATTTA 16882765 >seq4 Length=72497890 Score = 102 bits (112), Expect = 9e-17 Identities = 139/194 (72%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 176232 AGATATTTTACTAGGTCACGTGGCGAGTCATAATCATTAACATGTATAAATGCGTGTGGT 176291 ||||| || |||| |||| || |||| |||||| | ||||| || |||| | || | Sbjct 54772139 AGATACTTCGCTAGCTCACTGGGAGAGTTATAATCTTCCACATGAATGAATGAATCTGCT 54772080 Query 176292 GGAATGTAGTTTTCATAATTTTGTCTGGAGGGTCCTAAAACTATTGGTACGGTACGTGCT 176351 ||||| || || || ||||||| || || || || | ||| | ||||| | | ||| Sbjct 54772079 GGAATATAATTCTCGTAATTTTCCCTAGATGGCCCCAGAACAACAGGTACAGAGCCAGCT 54772020 Query 176352 AATAATGAGCGGTAGATCTTTTCTGAGATGTAGTCAGTGTGAATTGAGTTTTCAAAAGCT 176411 | || | ||||| |||||||| |||||| || |||| |||||||||||||||| Sbjct 54772019 AGAAAAGCATTGTAGAGCTTTTCTGTGATGTAATCTTTGTGGATTGAGTTTTCAAAAGAA 54771960 Query 176412 AAATAGAACTTACA 176425 | ||| || || || Sbjct 54771959 AGATAAAATTTGCA 54771946 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 577213406162280