Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lycaon_20pictus_20[genbank_20GCA_5F001887905.1_202016-12-01] 803 sequences; 2,358,143,818 total letters Query= NC_024446.1 Length=306862 Score E Sequences producing significant alignments: (Bits) Value seq33 158 2e-33 seq1 131 3e-25 seq35 122 2e-22 seq39 107 4e-18 seq31 95.1 2e-14 seq18 93.3 8e-14 seq38 91.5 3e-13 >seq33 Length=88276357 Score = 158 bits (174), Expect = 2e-33 Identities = 173/229 (76%), Gaps = 1/229 (0%) Strand=Plus/Minus Query 82583 ACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGA 82642 |||||| ||||| ||||| || ||||||||||| ||||| ||||| || || || || | Sbjct 13711234 ACCTCCCCTCAAGCGCAGGACCAAGTGCAGAGTGGATTCCTTCTGGATGTTGTAGTCGGG 13711175 Query 82643 TAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGG 82702 ||| | | || ||||| || ||||| || |||||||| | || || || || || || Sbjct 13711174 TAGGGTGCGCCCATCTTCCAGCTGTTTGCCGGCAAAGATCAACCTCTGCTGGTCAGG-GG 13711116 Query 82703 TATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTAC 82762 || || || || ||||| ||||| |||| ||||| || || || ||| | || || || Sbjct 13711115 GATGCCCTCTTTTTCTTGGATCTTCCCTTTGACATTCTCGATGGTGTCACTGGGCTCCAC 13711056 Query 82763 TTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATT 82811 |||| ||| || ||||| || ||||| ||||| ||||| ||||||||| Sbjct 13711055 CTCCAGAGTGATGGTCTTACCAGTCAAGGTCTTCACAAAGATCTGCATT 13711007 >seq1 Length=122647182 Score = 131 bits (144), Expect = 3e-25 Identities = 158/215 (73%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 82596 CGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCG 82655 ||||| || ||||||||||| || || ||||| || || || || || || | | || Sbjct 14843730 CGCAGGACCAAGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGTCCA 14843789 Query 82656 TCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTA 82715 ||||| || ||||| || |||||||| | || || || || || || || || || || Sbjct 14843790 TCTTCCAGCTGTTTGCCGGCAAAGATCAACCTCTGCTGGTCAGGGGGGATGCCCTCTTTT 14843849 Query 82716 TCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATC 82775 ||||| ||||| |||| ||||| || || || ||| | || || || |||| || || Sbjct 14843850 TCTTGGATCTTCCCTTTGACATTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATG 14843909 Query 82776 GTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 ||||| || ||||| ||||| || || |||||||| Sbjct 14843910 GTCTTACCAGTCAAGGTCTTCACGAAGATCTGCAT 14843944 Score = 109 bits (120), Expect = 1e-18 Identities = 144/200 (72%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 82611 AGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCTAGTTGTTTT 82670 ||||| | |||||||| || || |||||||| || | | || ||||| || | || Sbjct 93586474 AGAGTTAACTCTTTCTGGATGTTGTAATCAGAAAGGGTGCGGCCATCTTCCAGCTTCTTG 93586533 Query 82671 CCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCT 82730 || |||||||| || || || || || ||||| || ||| | |||||||| ||||| | Sbjct 93586534 CCTGCAAAGATGAGCCTCTGCTGGTCAGGAGGGATGCCTCCTTTATCTTGGATCTTGGTC 93586593 Query 82731 TTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAAC 82790 || |||||||| | || ||| | || || || |||| || || || |||| | || Sbjct 93586594 TTCACATTTTCGTTGGTGTCACTGGGCTCAACCTCCAGGGTGATGGTATTGCAGGCCAGG 93586653 Query 82791 GTCTTTACAAATATCTGCAT 82810 ||||| | ||||||||||| Sbjct 93586654 GTCTTCATGAATATCTGCAT 93586673 Score = 96.9 bits (106), Expect = 7e-15 Identities = 108/143 (76%), Gaps = 1/143 (1%) Strand=Plus/Plus Query 82608 TGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCTAGTTGT 82667 || ||||| ||||| || || || || || ||||| || | || ||||| ||||| Sbjct 30551898 TGAAGAGTGGATTCCTTTTGAATGTTGTAGTCAGACTGAGCACACCCATCTTCCAGTTGC 30551957 Query 82668 TTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTT 82727 || ||||||||| ||||| || |||| ||| | ||||||| ||||||| ||||||| Sbjct 30551958 TTGCCAGCAAAGTCCAGTCTCTGCTGATGAGGAAGAATTCCTTTCTTATCT-GAATCTTG 30552016 Query 82728 GCTTTTACATTTTCAATCGTATC 82750 || ||||||||||| | ||||| Sbjct 30552017 GCCTTTACATTTTCTACTGTATC 30552039 >seq35 Length=77559626 Score = 122 bits (134), Expect = 2e-22 Identities = 162/224 (72%), Gaps = 1/224 (0%) Strand=Plus/Plus Query 82587 CCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGA 82646 || |||| || || || | || ||||| || |||||||| || || |||||||| ||| Sbjct 46120157 CCCCTCAGGCGAAGGACAAGGTAGAGAGTTGACTCTTTCTGGATGTTGTAATCAGAAAGA 46120216 Query 82647 ATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATT 82706 | | || ||||| || || || || |||| ||| || || || || || || || | Sbjct 46120217 GTGCAGCCATCTTCCAGCTGCTTACCTGCAACGATGAGCCTCTGCTGGTCAGGGGGG-TG 46120275 Query 82707 CCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCC 82766 || || ||||| || ||||| || || ||||||||||| || ||| | || || || ||| Sbjct 46120276 CCCTCTTTATCCTGGATCTTGGCCTTCACATTTTCAATGGTGTCACTGGGCTCCACCTCC 46120335 Query 82767 AAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 | || || ||||||| |||| ||||| | || |||||||| Sbjct 46120336 AGGGTAATGGTCTTGCAGGTCAGGGTCTTCAGGAAGATCTGCAT 46120379 >seq39 Length=123855249 Score = 107 bits (118), Expect = 4e-18 Identities = 107/139 (77%), Gaps = 0/139 (0%) Strand=Plus/Minus Query 82612 GAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCTAGTTGTTTTC 82671 |||| || || || || || || || |||| | | | | || || || ||||| || | Sbjct 84732056 GAGTGGACTCCTTTTGAATGTTGTAGTCAGGCAAAGTACGGCCATCCTCCAGTTGCTTGC 84731997 Query 82672 CAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCTT 82731 ||||||| || ||||| || ||||| ||||| |||||||||||||| ||||||| || | Sbjct 84731996 CAGCAAATATCAGTCTCTGCTGATCAGGAGGGATTCCTTCCTTATCCAGAATCTTGGCCT 84731937 Query 82732 TTACATTTTCAATCGTATC 82750 || ||||||| |||||||| Sbjct 84731936 TTTCATTTTCTATCGTATC 84731918 >seq31 Length=30896855 Score = 95.1 bits (104), Expect = 2e-14 Identities = 166/238 (70%), Gaps = 19/238 (8%) Strand=Plus/Plus Query 82591 TCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTC 82650 ||| | |||| || | || ||| || | |||||||| ||| | ||||||| ||| | | Sbjct 12369509 TCAGATGCAGGACCAGGTACAGGGTCAACTCTTTCTGGATAATGAAATCAGAAAGAGTGC 12369568 Query 82651 T---ACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTG-------ATCTGGA 82700 ||| ||||| || || || |||||||| || ||||| || |||||| Sbjct 12369569 AGCGACCATCTTCCAGCTGCTTGTTTGCAAAGATAAGCCTTTGCTGTTGTTTTATCTGGC 12369628 Query 82701 ---GGT--ATTCC--TTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATT 82753 ||| || || |||| |||||| ||||| || || ||||||||||| |||| | Sbjct 12369629 AGGGGTGAATGCCCTTTCC--ATCTTGGATCTTGGCCTTCACATTTTCAATGCCATCACT 12369686 Query 82754 AGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATT 82811 |||||| | |||| || || |||||||| ||||| ||||| | || || |||||| Sbjct 12369687 AGGTTCCATCTCCAGGGTGATGGTCTTGCCAGTCAAGGTCTTCATGAAGATTTGCATT 12369744 >seq18 Length=51628521 Score = 93.3 bits (102), Expect = 8e-14 Identities = 71/84 (85%), Gaps = 0/84 (0%) Strand=Plus/Plus Query 82658 TTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATC 82717 ||| ||||| || ||||||||||| ||||| || | ||| ||||| |||||||||||||| Sbjct 524994 TTCCAGTTGCTTGCCAGCAAAGATCAGTCTCTGCTCATCAGGAGGAATTCCTTCCTTATC 525053 Query 82718 TTGAATCTTTGCTTTTACATTTTC 82741 || ||||| || ||||||||||| Sbjct 525054 CTGGATCTTGGCCTTTACATTTTC 525077 >seq38 Length=61073796 Score = 91.5 bits (100), Expect = 3e-13 Identities = 148/212 (70%), Gaps = 1/212 (0%) Strand=Plus/Plus Query 82599 AGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCT 82658 || || |||||||| || || |||||||| ||||| | || || ||| | || ||| Sbjct 1878618 AGCACCAAGTGCAGGGTGGACTCTTTCTGGATATTGCAGTCTGACAGAGTGTAGCCATCT 1878677 Query 82659 TCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCT 82718 || || |||| || | ||| || || || | || || | || |||||||||||| Sbjct 1878678 TCCAGCTGTTCGCCTGAAAAAATCAGATGCTGCGGGTCAGGCAGGAT-CCTTCCTTATCT 1878736 Query 82719 TGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTC 82778 || || || ||||| ||||| ||||| || ||| | | || || |||| | || ||| Sbjct 1878737 TGGATTTTGGCTTTGACATTCTCAATGGTGTCAGTGAGATCGACCTCCAGGGGGATGGTC 1878796 Query 82779 TTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 || |||||| ||||| | || | |||||| Sbjct 1878797 TTTCCTGTCTGGGTCTTCTCGAAGACCTGCAT 1878828 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 981817098532217