Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lycaon_20pictus_20[genbank_20GCA_5F001887905.1_202016-12-01] 803 sequences; 2,358,143,818 total letters Query= NC_025257.1 Length=102759 Score E Sequences producing significant alignments: (Bits) Value seq1 114 8e-21 seq33 113 3e-20 seq36 98.7 7e-16 seq19 98.7 7e-16 >seq1 Length=122647182 Score = 114 bits (126), Expect = 8e-21 Identities = 153/210 (73%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 33541 ACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCC 33600 ||||| || |||||| ||| || || |||||||| ||||| || |||||| | || ||| Sbjct 14843736 ACCAAGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGTCCATCTTCC 14843795 Query 33601 AATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCA 33660 | ||||| |||||||| ||||| | |||||| || | || | || ||||| || Sbjct 14843796 AGCTGTTTGCCGGCAAAGATCAACCTCTGCTGGTCAGGGGGGATGCCCTCTTTTTCTTGG 14843855 Query 33661 ATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTT 33719 || ||| ||| | ||| || | |||||| || | ||||| || | ||||| || || Sbjct 14843856 ATCTTCCCTTTGA-CATTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTT 14843914 Query 33720 ACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 ||| || || || || || ||||||||||| Sbjct 14843915 ACCAGTCAAGGTCTTCACGAAGATCTGCAT 14843944 >seq33 Length=88276357 Score = 113 bits (124), Expect = 3e-20 Identities = 170/238 (71%), Gaps = 3/238 (1%) Strand=Plus/Minus Query 33513 AAAATCGTCACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTT 33572 ||| | | |||| || ||||| || | ||||| || |||||| || || || ||||| Sbjct 13711243 AAATTAGACACCTCCCCTCAAGCGCAGGACCAAGTGCAGAGTGGATTCCTTCTGGATGTT 13711184 Query 33573 GTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTG 33632 ||| |||| || ||||| | || |||| ||||| |||||||| ||||| | |||||| Sbjct 13711183 GTAGTCGGGTAGGGTGCGCCCATCTTCCAGCTGTTTGCCGGCAAAGATCAACCTCTGCTG 13711124 Query 33633 ATCTTGCGGCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGC 33691 || | || | || ||||| || || ||| ||| | ||| || | |||||| | Sbjct 13711123 GTCAGGGGG-ATGCCCTCTTTTTCTTGGATCTTCCCTTTGA-CATTCTCGATGGTGTCAC 13711066 Query 33692 TTGATTCCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 | | ||||| || | ||||| || ||||| || || || || |||||||||||||| Sbjct 13711065 TGGGCTCCACCTCCAGAGTGATGGTCTTACCAGTCAAGGTCTTCACAAAGATCTGCAT 13711008 Score = 84.2 bits (92), Expect = 1e-11 Identities = 146/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 33541 ACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCC 33600 |||| || ||||| ||| || || |||||||| ||||| || |||| | || ||| Sbjct 13710987 ACCAGGTGCAGAGTTGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCACCCATCTTCC 13710928 Query 33601 AATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCA 33660 | ||||| | |||||| ||||| | |||||| || | || | ||||| ||||| Sbjct 13710927 AGCTGTTTGCTGGCAAAGATCAACCTCTGCTGGTCAGGGGGGATGCCTTCCTTGTCCTGG 13710868 Query 33661 ATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTT 33719 || || || | |||| || | |||||| | | ||||| || | || || || || Sbjct 13710867 ATCTT-TGCCTTGACATTCTCGATGGTGTCATTGGGCTCCACCTCCAGAGTAATGGTCTT 13710809 Query 33720 ACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 ||| || || || || || ||||||||||| Sbjct 13710808 ACCAGTCAAGGTCTTCACGAAGATCTGCAT 13710779 >seq36 Length=80974255 Score = 98.7 bits (108), Expect = 7e-16 Identities = 161/228 (71%), Gaps = 3/228 (1%) Strand=Plus/Plus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 ||||||| || || | |||||| || | ||| |||||| || || ||||| || || Sbjct 43111083 CCACCTCGCAGGCGAAGCACCAAGTGCAAGGTGGACTCTTTCTG-ATATTGTAGTCTGAC 43111141 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 || || || | || || | ||||| || |||||||||| ||||||||| || | || Sbjct 43111142 AGAGTTCGGCCATCTTCTAGCTGTTTGCCCGCAAAAATCAGACGCTGCTGGTCAGGTGGG 43111201 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTCAC-GGTGTCGCTTGATTCCAC 33701 | || |||||||| ||||| ||| | ||| ||| |||||| || | || || Sbjct 43111202 ATGCCCTCTTTGTCTTGGATTTTGGCTTTGA-CATTTTCAGTGGTGTCACTGGGCTCGAC 43111260 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 |||| ||||| ||||| || | | || || |||||||||||||| Sbjct 43111261 CTCAAGGGTGATAGTTTTGCCCATCAGGGTCTTCACAAAGATCTGCAT 43111308 >seq19 Length=38964370 Score = 98.7 bits (108), Expect = 7e-16 Identities = 151/213 (71%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 33541 ACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCC 33600 |||| || |||||| ||| || || |||||||| ||||| || ||||| | || ||| Sbjct 5007384 ACCAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGCCCATCTTCC 5007325 Query 33601 AATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCA 33660 | ||||| |||||||| ||||| | |||||| || | || | || || ||||| Sbjct 5007324 AGCTGTTTGCCGGCAAAGATCAACCTCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGG 5007265 Query 33661 ATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTT 33719 || ||| || | | | || | |||||| || | ||||| || | ||||| || || Sbjct 5007264 ATCTTCGCCTTGA-CGTTCTCGATGGTGTCACTGGGCTCCACCTCCAGAGTGATGGTCTT 5007206 Query 33720 ACCTGTTAACGTTTTTACAAAGATCTGCATAGT 33752 ||| || || || || || ||||||||||| || Sbjct 5007205 ACCCGTCAAGGTCTTCACGAAGATCTGCATTGT 5007173 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 328700783117760