Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lycaon_20pictus_20[genbank_20GCA_5F001887905.1_202016-12-01] 803 sequences; 2,358,143,818 total letters Query= NC_026421.1 Length=182380 Score E Sequences producing significant alignments: (Bits) Value seq27 201 1e-46 seq36 158 1e-33 seq13 105 8e-18 >seq27 Length=31376848 Score = 201 bits (222), Expect = 1e-46 Identities = 184/233 (79%), Gaps = 0/233 (0%) Strand=Plus/Plus Query 171159 ACCTGGCAGAAAATCAAGCCCACCATTCCAGAGAACATGATAACTTTTAGCAAAGACCAC 171218 || ||||| ||| ||||||| | | || |||||| | || || ||||| | || Sbjct 16880029 ACATGGCAAAAAGTCAAGCCTGTGAGCCTGGAAAACATGGTCACCTTCAGCAAGAATCAT 16880088 Query 171219 GGGGTGGTGGTCCAGCCGGCTTATAAGGACAAGATAAACATCACCCAGCTTGGACTCCAA 171278 ||||| ||||||||||| || || |||||||||||||| |||||||||| | ||| | Sbjct 16880089 GGGGTCGTGGTCCAGCCTGCCTACAAGGACAAGATAAATGTCACCCAGCTGGAGCTCAAG 16880148 Query 171279 AACTCAACCATCACTTTTTGGAATACCACCTTAGAGGACGAGGGGTGCTACAACTGCCTC 171338 ||||||||||| || || |||||||||||| | || || || ||||| ||||| |||||| Sbjct 16880149 AACTCAACCATTACCTTCTGGAATACCACCCTGGARGATGAAGGGTGTTACAAGTGCCTC 16880208 Query 171339 TTTAACACCTTTGGGTCTGGGAAAATCTCGGGGGTGGCCTGCCTCACCCTCTC 171391 || ||||| ||||| |||||||| |||||||| ||||||||||||||||| Sbjct 16880209 TTCAACACTTTTGGTTCTGGGAAGATCTCGGGAACAGCCTGCCTCACCCTCTC 16880261 Score = 141 bits (156), Expect = 1e-28 Identities = 171/233 (73%), Gaps = 0/233 (0%) Strand=Plus/Plus Query 171426 TTTGATGACCACCTGAACATCACCTGTTCTGCCAATGCCCGCCCGCCACCTCAGATTTTT 171485 || || ||||| || || ||||| || | ||||||||||||||| ||||| ||| | Sbjct 16882752 TTCGAAGACCAGCTAAATATCACGTGCTTTGCCAATGCCCGCCCAGCACCTGTGATCTCC 16882811 Query 171486 TGGAAGATTTCGGGGTCAGAAATTGAAAACAGTAGCGAGGTTCTTTCCCATTCTAATGGA 171545 |||||| | | ||||||| ||||||||||||| |||||||| | || | ||||| Sbjct 16882812 TGGAAGGTCGCTGGGTCAGGGATTGAAAACAGTACTGAGGTTCTCTTGCACCCCAATGGG 16882871 Query 171546 ACTACTTCTGTAACCAGTGTACTCCAAGTTAAAGACCCCAAGAGTCAGTTGGGAAAGGAG 171605 || || || || || || || ||||| || ||||| |||||||| || |||| ||||| Sbjct 16882872 ACCACATCAGTCACAAGCGTCCTCCACGTCAAAGATCCCAAGAGACAAGTGGGGAAGGAA 16882931 Query 171606 GTTATCTGCCAAGTGTGGCACCTGGGAAATGTAACTAACTTAAGGGAAACTGT 171658 || | ||||| || ||||||||| | || || | | | ||| | ||||| Sbjct 16882932 GTGGTTTGCCAGGTTCTGCACCTGGGGACAGTGACCAGCCTCAGGCAGACTGT 16882984 >seq36 Length=80974255 Score = 158 bits (174), Expect = 1e-33 Identities = 134/165 (81%), Gaps = 0/165 (0%) Strand=Plus/Minus Query 146982 CTTAAGGCCGGTCACGTGGGCCACCATGTAGGTGAGCAGCGAGTAGCTGGCTATGTTGAA 147041 ||| ||||| || | ||| || | ||||||||||||||| | ||||||||| |||||||| Sbjct 67495237 CTTCAGGCCTGTGATGTGTGCGATCATGTAGGTGAGCAGGGCGTAGCTGGCGATGTTGAA 67495178 Query 147042 GGGGACCCCCAGGCCCATGTCCCCCGACCTCTGGTACAGCTGGCACGAGAGCTCCCCGTC 147101 ||| || ||||| |||||||| || ||||||||||| |||||||| || ||||| |||| Sbjct 67495177 GGGCACGCCCAGCCCCATGTCTCCTGACCTCTGGTATAGCTGGCAGGACAGCTCACCGTT 67495118 Query 147102 GGCCACGTAAAACTGGCACAGGATGTGGCACGGCGGCAGCGCCAT 147146 |||| || |||||||| ||| |||||||| || || ||||| Sbjct 67495117 CACCACATAGAACTGGCAGAGGGCATGGCACGGAGGTAGGGCCAT 67495073 Score = 138 bits (152), Expect = 1e-27 Identities = 131/170 (77%), Gaps = 12/170 (7%) Strand=Plus/Minus Query 178228 TTAAGGGTTACTTGGGTTGCCAGGCCTTGTCAGAGATGATTCAGTTTTACTTGGAGGAGG 178287 || |||||||| |||||||||| ||| |||| |||||||| ||||||||||||||||||| Sbjct 5935613 TTTAGGGTTACCTGGGTTGCCAAGCCCTGTCGGAGATGATCCAGTTTTACTTGGAGGAGG 5935554 Query 178288 TGATGCCTCAGGCCGAGAATCACAGCGGGGGTGGAGGCCCGGACATTAAGGAGCATGTAA 178347 ||||||| | ||| ||||| ||| | ||| ||||| ||| | || || | Sbjct 5935553 TGATGCCCCGGGCTGAGAACCAC------------GACCCAGACATCAAGAACCACGTGA 5935506 Query 178348 ACTCTCTGGGGGAAAAGCTAAAGACCCTTAGAGTGAGGCTGCGGCGATGT 178397 |||| |||| || ||||| |||||||| || |||||||||| || ||| Sbjct 5935505 ACTCCTTGGGAGAGAAGCTCAAGACCCTCAGGCTGAGGCTGCGACGCTGT 5935456 Score = 87.8 bits (96), Expect = 2e-12 Identities = 66/78 (85%), Gaps = 0/78 (0%) Strand=Plus/Minus Query 178462 AGCTTCAAGAAAAGGGTGTTTACAAAGCTATGAGTGAGTTTGATATTTTTATTAACTACA 178521 |||| || || || ||||| |||||||| |||||||||||||| || || || ||||||| Sbjct 5933454 AGCTCCAGGAGAAAGGTGTCTACAAAGCCATGAGTGAGTTTGACATCTTCATCAACTACA 5933395 Query 178522 TAGAAGCTTACATGACAA 178539 ||||| | |||||||||| Sbjct 5933394 TAGAAACCTACATGACAA 5933377 >seq13 Length=58133239 Score = 105 bits (116), Expect = 8e-18 Identities = 115/153 (75%), Gaps = 0/153 (0%) Strand=Plus/Plus Query 8610 GTACTCTCTGGTGTTTTTGTTTGGGCTAATTGGCAATGCCCTGGTGATCCTAGTCCTCAT 8669 ||| || |||||||| | |||| || | ||||| ||||||| |||| |||||||| Sbjct 42424672 GTATTCCCTGGTGTTCATCATTGGCCTGGTCGGCAACATCCTGGTGCTCCTGGTCCTCAT 42424731 Query 8670 AAAGTACAAGAGGCTCAGGATCATGACCAACATCTTCCTGTTCAACCTGGCCCTTGGTGA 8729 | |||| |||||||| || |||||||| ||||| ||| ||||||||||| | || Sbjct 42424732 GCAATACAGGAGGCTCAAGAGCATGACCAGCATCTACCTTCTCAACCTGGCCATATCGGA 42424791 Query 8730 CCTGCTGCTGATTTTCACCCTCCCCTTTTGGAT 8762 |||||| | | ||||| || ||||| ||||| Sbjct 42424792 CCTGCTCTTCCTCTTCACGCTGCCCTTCTGGAT 42424824 Score = 102 bits (112), Expect = 1e-16 Identities = 197/288 (68%), Gaps = 6/288 (2%) Strand=Plus/Minus Query 8610 GTACTCTCTGGTGTTTTTGTTTGGGCTAATTGGCAATGCCCTGGTGATCCTAGTCCTCAT 8669 ||| || |||||||| || |||| || | ||||||| ||||| | | |||||| Sbjct 42383827 GTATTCCCTGGTGTTCGTGATTGGTCTGCTGGGCAATGTGGTGGTGGTGGTGATCCTCAC 42383768 Query 8670 AAAGTACAAGAGGCTCAGGATCATGACCAACATCTTCCTGTTCAACCTGGCCCTTGGTGA 8729 ||| |||||||| ||| |||| ||||| |||||||||||| |||| ||||| || ||| Sbjct 42383767 AAAATACAAGAGACTCTGGATTATGACTAACATCTTCCTGCTCAATTTGGCCATTTCTGA 42383708 Query 8730 CCTGCTGCTGATTTTCACCCTCCCCTTTTGGATTCACTTCCACTCGGGGGGAACTGGTGG 8789 | |||| | | ||||| || || |||||||| || ||| || |||| || Sbjct 42383707 CTTGCTCTTTCTATTCACTCTGGTATTCTGGATTCA-TTATACT-GGATGGAA----TGA 42383654 Query 8790 GTGGGACGCCGACCACCACATGTGTAAGTTTATAGTGGGCCTTTGCAACGTGGCACTGTA 8849 |||| | ||| |||||||||| | || || |||| || ||| | || Sbjct 42383653 TTGGGTTTTTGGCCATTCCATGTGTAAGCTCATCTCTGGGCTTTATTACTTGGGCTTATA 42383594 Query 8850 CAGCGAAGTCCTGTTTATCATCCTGTTGACTCTGGACAGGTATCTTGC 8897 | | || || | || ||||||||| |||| | ||| |||| || || Sbjct 42383593 CGGTGAGATCTTTTTCATCATCCTGCTGACCATAGACCGGTACCTGGC 42383546 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583482143239200