Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lycaon_20pictus_20[genbank_20GCA_5F001887905.1_202016-12-01] 803 sequences; 2,358,143,818 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq14 127 3e-24 seq5 125 1e-23 seq9 120 4e-22 seq39 118 1e-21 >seq14 Length=50855280 Score = 127 bits (140), Expect = 3e-24 Identities = 108/133 (81%), Gaps = 0/133 (0%) Strand=Plus/Minus Query 68719 TGAAATTCCCCAGATAACACTCTACGAGTGTAAATATTACTGGTATATGGTTCCACAGAT 68778 |||||||| || ||||| ||||| ||||| || || || |||||||| ||||| | || Sbjct 26626357 TGAAATTCTCCTGATAAGACTCTTCGAGTATAGATGTTGCTGGTATAAGGTTCAATGGAC 26626298 Query 68779 TCATTATTTCCCAGAATTTGAGCAGTTGATGCAGTTGGCATAGGTGCCACCAATAAACTA 68838 ||||||||||||||||| ||||||||||| ||||| ||||| || || | | |||||| Sbjct 26626297 TCATTATTTCCCAGAATCTGAGCAGTTGAAGCAGTAGGCATTGGGGCAATAAGTAAACTG 26626238 Query 68839 TTTCTAAGACCAT 68851 ||||| | ||||| Sbjct 26626237 TTTCTTACACCAT 26626225 Score = 104 bits (114), Expect = 3e-17 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 69507 ATATAGCCGTTCGAATTCATCTCCCCAAACATCATCCAATCCAGGACATTCATTTGGACA 69566 ||||||| ||| ||||| ||||||||||| ||||||||||||||||||||||||||||| Sbjct 26616961 ATATAGCTTTTCAAATTCCTCTCCCCAAACCTCATCCAATCCAGGACATTCATTTGGACA 26616902 Query 69567 CATCAATGACCA 69578 |||||| ||||| Sbjct 26616901 CATCAAAGACCA 26616890 Score = 102 bits (112), Expect = 1e-16 Identities = 125/171 (73%), Gaps = 0/171 (0%) Strand=Plus/Minus Query 70331 CATCACTAAATAGtttttttGTTTCCTTGTGTAAATTTGATATGGCTATTCTGGCTGCTA 70390 || |||| || | ||| |||||||| ||||| || || || | ||| || || ||||| | Sbjct 26604660 CACCACTGAACACTTTCTTTGTTTCTTTGTGCAAGTTGGAGACGGCAATCCTTGCTGCCA 26604601 Query 70391 GAATAGCATAGTCAGGATGTTGTGTAGTACAAGTAGCTGCTATTTCCGCAGCTAACGTAT 70450 | || |||||||||||||| | || || | || || ||| | || ||||| || |||| Sbjct 26604600 GGATGGCATAGTCAGGATGCTTAGTCGTCAAGGTTGCAGCTGTCTCAGCAGCCAAAGTAT 26604541 Query 70451 CTAATTCTATAGTTGTAACTCCGTTATATAGCCCTTGAATAACTTTCATGG 70501 | | ||| | ||| || || || | |||| || || || |||||||||| Sbjct 26604540 CCAGTTCCACAGTAGTGACCCCACTGTATAAGCCCTGGATTACTTTCATGG 26604490 Score = 98.7 bits (108), Expect = 1e-15 Identities = 102/134 (76%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 69595 ACTCGTTTCATAAATAGATCGGGAATCCAAAGAGCTATAAAGAGATCTCTGGTTCTATTT 69654 ||||||||||| || ||||| |||||||||||||| | || || || |||| | | | Sbjct 26616287 ACTCGTTTCATGAACAGATCTGGAATCCAAAGAGCAAAGAAAAGGTCCCTGGCACGCTGT 26616228 Query 69655 TCTTCATTTCCTGTAttttttttAAGATCGAGAAACTCCATAATATCAGAATGCCATGGT 69714 ||||| ||||| || || || || | ||| |||||||| | ||| || ||||||| ||| Sbjct 26616227 TCTTCCTTTCCCGTGTTCTTCTTTAAATCAAGAAACTCAAAAATGTCTAAATGCCAAGGT 26616168 Query 69715 TCTAGATATATCGC 69728 || || || || || Sbjct 26616167 TCCAGGTAAATAGC 26616154 Score = 93.3 bits (102), Expect = 6e-14 Identities = 105/141 (74%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 69991 GTTCCCGCATTAAATAATGTAGGAGATGCGTGAGTGAACCATTTTTCAGAAAGCAGATTG 70050 || || |||||||| | || ||||| || || || ||||| || |||||||| || ||| Sbjct 26609848 GTACCAGCATTAAACAGAGTGGGAGAGGCATGGGTAAACCACTTCTCAGAAAGAAGGTTG 26609789 Query 70051 TATGTTTCAATAGCTGATTCTATATCCCACTGATGAATTCCTATCGCGACACGCATCAAC 70110 |||||||||||||| | || ||||| | ||||| || | | || | ||||||| Sbjct 26609788 TATGTTTCAATAGCAGCATCAATATCTTCTTCGTGAATCCCCACAGACACTCTCATCAAC 26609729 Query 70111 ATATGCTGAGGTCGTTCTACC 70131 ||||| || |||| |||| || Sbjct 26609728 ATATGTTGTGGTCTTTCTGCC 26609708 >seq5 Length=63240551 Score = 125 bits (138), Expect = 1e-23 Identities = 108/134 (81%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 39641 TCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGGCATTAGACCACGCTTTTTG 39700 |||||||| || || | ||| || ||||| |||||||||||||| ||||| | || || Sbjct 3816714 TCATCTCTGCTGATGAGTTCATTGGAAAAAGTGAGTCCAGGCATGAGACCTCTTTTCTTT 3816773 Query 39701 AGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAGATGCCTTCTACTGCTGCAAATGCA 39760 ||||| ||||| ||||||||||||||||| ||||| || |||||||| || ||||| || Sbjct 3816774 AGCCAGAATATAGCAGCAAAAGATCCAGAGAAGAAAATCCCTTCTACAGCAGCAAAAGCC 3816833 Query 39761 ACAAGTCTCTCTCC 39774 || | ||| || || Sbjct 3816834 ACGACTCTTTCCCC 3816847 Score = 89.7 bits (98), Expect = 7e-13 Identities = 94/123 (76%), Gaps = 3/123 (2%) Strand=Plus/Plus Query 39987 AAAATCTTTCCGCCAAATTTTCATTCACTATTCCATCACTAGCGGCAAAAAATGCCAATA 40046 |||||||| || |||||||||||||| ||||||||||| || |||||||| || |||| Sbjct 3825109 AAAATCTTACC---AAATTTTCATTCACGATTCCATCACTGGCTGCAAAAAAGGCTAATA 3825165 Query 40047 CATGTTTAATAAAATATTTTTCATCGGGTGTCAATTTATTCCAGTCATTGATATCTTTTG 40106 || |||||||| || ||||| | | | | || ||||||| | || ||| |||| Sbjct 3825166 TGTGAGAGATAAAATACTTCTCATCTGATTTAAGCTTGTTCCAGTGAGGGAGATCCTTTG 3825225 Query 40107 ATA 40109 ||| Sbjct 3825226 ATA 3825228 >seq9 Length=64259867 Score = 120 bits (132), Expect = 4e-22 Identities = 102/126 (81%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 39639 CCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGGCATTAGACCACGCTTTT 39698 |||||||||| ||||| | ||| || ||||| ||||| |||||||| || || || || | Sbjct 7103041 CCTCATCTCTGCTAATAAGTTCATTGGAAAACGTGAGGCCAGGCATCAGGCCCCGTTTCT 7102982 Query 39699 TGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAGATGCCTTCTACTGCTGCAAATG 39758 ||||||| ||||| | |||||||| || ||||||||||| ||||| || || ||||| | Sbjct 7102981 TGAGCCAGAATATTGACGCAAAAGAACCCGAAAAGAAGATTCCTTCCACGGCAGCAAAGG 7102922 Query 39759 CAACAA 39764 | |||| Sbjct 7102921 CCACAA 7102916 >seq39 Length=123855249 Score = 118 bits (130), Expect = 1e-21 Identities = 180/255 (71%), Gaps = 1/255 (0%) Strand=Plus/Minus Query 39808 CCAATCAGCTTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGAGATAATGTTT 39867 || ||| ||||||||||||| ||||| |||||| || || ||||| |||||| | | | Sbjct 94436523 CCGATCTGCTTTCTTCTTTATACAAGACATTGTCTCAATGGCATTGAAGAGAAATTCCCT 94436464 Query 39868 TTCATCACTATCTTTAACATATGTATCTATTAACAGACTATACATTTCTGAATGGATGTT 39927 ||| | | ||||| || ||| || | || | || |||||||| || || | |||||| Sbjct 94436463 TTCTTTAGAATCTTCAATATAAGTGACAATGAGGAGGCTATACATCTCAGAGTTGATGTT 94436404 Query 39928 TTCAATCGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATTTGTACCTCTGAACA 39987 ||| | | || || ||||| || ||||| ||||| |||| || || ||| Sbjct 94436403 TTCCACGACAATTTGGAATCCATAGAAACAGAGGGCTTCTATAATCTGAACTTCTTGGAT 94436344 Query 39988 AAATCTTTCCGCCAAATT-TTCATTCACTATTCCATCACTAGCGGCAAAAAATGCCAATA 40046 ||| | ||| |||| || | | || ||||| |||||||| || |||| || ||||| | Sbjct 94436343 AAACCACTCCACCAAGTTATCCTTTTACTATGCCATCACTTGCCACAAAGAAAGCCAAAA 94436284 Query 40047 CATGTTTAATAAAAT 40061 ||| ||||||| Sbjct 94436283 TATGGGGTATAAAAT 94436269 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686901905152920