Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lycaon_20pictus_20[genbank_20GCA_5F001887905.1_202016-12-01] 803 sequences; 2,358,143,818 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq9 93.3 3e-14 seq38 86.0 5e-12 seq5 86.0 5e-12 >seq9 Length=64259867 Score = 93.3 bits (102), Expect = 3e-14 Identities = 93/118 (79%), Gaps = 2/118 (2%) Strand=Plus/Plus Query 43904 CGGTTTGCGCAAGAAGTTCA-ATTACCAGAAGCACGATGTTTTTATGGGTTTCAAATTGC 43962 |||||| ||||||||||| |||| | ||||| || ||||| ||||| || |||||||| Sbjct 7100700 CGGTTTAGCCAAGAAGTTCAGATTA-CGGAAGCCCGCTGTTTCTATGGCTTCCAAATTGC 7100758 Query 43963 CATAGAAAATATTCATTCGGAAATGTACAGTCTTCTGATAGATACGTACATCAAAGAT 44020 ||| ||||| || || || || ||||| ||||| || || || || || || |||||| Sbjct 7100759 CATGGAAAACATCCACTCTGAGATGTATAGTCTCCTCATTGACACTTATATTAAAGAT 7100816 >seq38 Length=61073796 Score = 86.0 bits (94), Expect = 5e-12 Identities = 116/162 (72%), Gaps = 6/162 (4%) Strand=Plus/Plus Query 19540 AAAAGTTCTTTGCACATTATAATACTAGATGAATTGGACGCAATCTGTAAGCAAAGAGGT 19599 || ||| ||||||||| || || | |||||| | || || ||||| ||||| ||||| Sbjct 10012007 AACAGTGGTTTGCACATAATCATCTTTGATGAAATTGATGCTATCTGCAAGCAGAGAGGG 10012066 Query 19600 T------CTGGTGTAAATGGAGTACATGACACTGTTGTCAATCAACTCCTGTCAAAATTA 19653 ||||| | ||||| ||||||||||| ||||| || | ||||| ||| | Sbjct 10012067 AGCATGGCTGGTAGCACAGGAGTTCATGACACTGTCGTCAACCAGTTGCTGTCCAAAATT 10012126 Query 19654 GACGGTGTTAACCAACTGAATAATATTTTAGTTATTGGCATG 19695 || || || | |||||||| || || ||||| ||||| ||| Sbjct 10012127 GATGGGGTAGAGCAACTGAACAACATCTTAGTCATTGGTATG 10012168 >seq5 Length=63240551 Score = 86.0 bits (94), Expect = 5e-12 Identities = 68/82 (83%), Gaps = 0/82 (0%) Strand=Plus/Minus Query 44493 AAAACCCGTTTGATTTTATGGAAAATATTTCGTTGGAAGGCAAAACAAACTTTTTTGAAA 44552 |||| || ||||||||||||||||| ||||| || ||||| ||||| || || ||||| | Sbjct 3798077 AAAATCCCTTTGATTTTATGGAAAACATTTCTTTAGAAGGGAAAACTAATTTCTTTGAGA 3798018 Query 44553 AACGCGTTGGAGAATATCAGCG 44574 |||| |||| ||| ||||| || Sbjct 3798017 AACGAGTTGCAGAGTATCAACG 3797996 Score = 82.4 bits (90), Expect = 6e-11 Identities = 68/83 (82%), Gaps = 0/83 (0%) Strand=Plus/Minus Query 43700 TTTGTCGTGTTTCCAATTCAATATCATGACATATGGCAAATGTACAAAAAAGCACAGGCG 43759 |||||| | |||||||||||||| | ||| || ||| ||||||| ||| | |||||||| Sbjct 3828603 TTTGTCATCTTTCCAATTCAATACCCTGATATTTGGAAAATGTATAAACAGGCACAGGCA 3828544 Query 43760 TCATTTTGGACAGCAGAAGAAGT 43782 || || ||||| |||||||| || Sbjct 3828543 TCTTTCTGGACTGCAGAAGAGGT 3828521 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397452110272015