Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lycaon_20pictus_20[genbank_20GCA_5F001887905.1_202016-12-01] 803 sequences; 2,358,143,818 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq36 140 4e-28 seq19 134 2e-26 seq34 125 8e-24 seq33 125 8e-24 seq1 114 1e-20 seq7 102 9e-17 seq18 93.3 5e-14 seq13 93.3 5e-14 seq38 82.4 9e-11 >seq36 Length=80974255 Score = 140 bits (154), Expect = 4e-28 Identities = 150/197 (76%), Gaps = 1/197 (1%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| |||||||| ||||| || | ||||| ||||| || |||||||| ||| | || Sbjct 43111308 ATGCAGATCTTTGTGAAGACCCTGATGGGCAAAACTATCACCCTTGAGGTCGAGCCCAGT 43111249 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | || || |||| | || || ||||| || ||||| ||||| || || || |||||| Sbjct 43111248 GACACCACTGAAAATGTCAAAGCCAAAATCCAAGACAAAGAGGGCATCCCACCTGACCAG 43111189 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 |||||||| |||||||| || || || || || |||| || || || ||||||| ||| Sbjct 43111188 CAGCGTCTGATTTTTGCGGGCAAACAGCTAGAAGATGGCCGAACTCTGTCAGACTACAAT 43111129 Query 27586 GTCCAAAAGGAATCCAC 27602 | || || || ||||| Sbjct 43111128 AT-CAGAAAGAGTCCAC 43111113 >seq19 Length=38964370 Score = 134 bits (148), Expect = 2e-26 Identities = 161/219 (74%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 |||||| ||||| || ||||| | || || ||||| || ||||| ||||| ||| | | Sbjct 5007175 AATGCAGATCTTCGTGAAGACCTTGACGGGTAAGACCATCACTCTGGAGGTGGAGCCCAG 5007234 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 ||| | ||| | || | ||||| || || |||||||||||||| || || || ||||| Sbjct 5007235 TGACACCATCGAGAACGTCAAGGCGAAGATCCAGGACAAGGAGGGCATCCCCCCTGACCA 5007294 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAA 27584 |||| | | || ||||| || || || || || |||| || ||||| | ||||| || Sbjct 5007295 GCAGAGGTTGATCTTTGCCGGCAAACAGCTGGAAGATGGGCGCACCCTGTCCGACTACAA 5007354 Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCT 27623 |||| ||||| |||||||| || || ||| | || || Sbjct 5007355 CATCCAGAAGGAGTCCACTCTGCACCTGGTCCTTCGCCT 5007393 >seq34 Length=88915096 Score = 125 bits (138), Expect = 8e-24 Identities = 152/207 (73%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 |||||| ||||| || || || || ||||||||||| || || || ||||| ||| | | Sbjct 47887687 AATGCAGATCTTCGTGAAAACCCTGACCGGCAAGACCATCACCCTGGAGGTGGAGCCCAG 47887746 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 ||| | ||| | ||| ||||||| || || ||||| || ||||| || || || ||||| Sbjct 47887747 TGACACCATCGAAAACGTGAAGGCCAAGATCCAGGATAAAGAGGGCATCCCCCCTGACCA 47887806 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAA 27584 |||| | || || ||||| || ||||| || || |||| || || || | || || || Sbjct 47887807 GCAGAGGCTCATCTTTGCAGGCAAGCAGCTGGAAGATGGCCGCACTCTTTCTGATTACAA 47887866 Query 27585 TGTCCAAAAGGAATCCACTCTTCATCT 27611 |||| || || || ||||| || || Sbjct 47887867 CATCCAGAAAGAGTCAACTCTCCACCT 47887893 >seq33 Length=88276357 Score = 125 bits (138), Expect = 8e-24 Identities = 158/216 (73%), Gaps = 1/216 (0%) Strand=Plus/Plus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 |||||| |||||||| ||||| | || || ||||| || ||||| ||||| ||| | | Sbjct 13711007 AATGCAGATCTTTGTGAAGACCTTGACTGGTAAGACCATCACTCTGGAGGTGGAGCCCAG 13711066 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 ||| | ||| | ||| | || | || || || || || ||||| || || || ||||| Sbjct 13711067 TGACACCATCGAGAATGTCAAAGGGAAGATCCAAGAAAAAGAGGGCATCCC-CCTGACCA 13711125 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAA 27584 |||| | | || ||||| || || || || || |||| || |||||| | ||||| || Sbjct 13711126 GCAGAGGTTGATCTTTGCCGGCAAACAGCTGGAAGATGGGCGCACCCTACCCGACTACAA 13711185 Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCG 27620 |||| |||||||||||||| || | ||| |||| Sbjct 13711186 CATCCAGAAGGAATCCACTCTGCACTTGGTCCTGCG 13711221 Score = 118 bits (130), Expect = 1e-21 Identities = 157/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| || ||||| | || || ||||| |||||||| ||||| ||| | | Sbjct 13710779 ATGCAGATCTTCGTGAAGACCTTGACTGGTAAGACCATTACTCTGGAGGTGGAGCCCAAT 13710838 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||| | ||| | ||||| || || ||||||||||| || || || || |||||| Sbjct 13710839 GACACCATCGAGAATGTCAAGGCAAAGATCCAGGACAAGGAAGGCATCCCCCCTGACCAG 13710898 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||| | | || ||||| | || || || || |||| | ||||| | ||||| || Sbjct 13710899 CAGAGGTTGATCTTTGCCAGCAAACAGCTGGAAGATGGGTGCACCCTGTCCGACTACAAC 13710958 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCT 27623 |||| ||||| || ||||| || || ||| | || || Sbjct 13710959 ATCCAGAAGGAGTCAACTCTGCACCTGGTCCTTCGCCT 13710996 >seq1 Length=122647182 Score = 114 bits (126), Expect = 1e-20 Identities = 163/227 (72%), Gaps = 2/227 (1%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| || || | || || ||| | || |||||||| ||||||||| |||| | Sbjct 30552098 ATGCAGATTTTCATGAAAACCCTTGCGGG-AAGACTATCACTCTTGAGACTGAGCCCTCA 30552040 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| | | |||| | ||||| || |||||| | ||| | ||||||| ||| | ||| Sbjct 30552039 GATACAGTAGAAAATGTAAAGGCCAAGATTCAG-ATAAGAAAGGAATTCTTCCTCATCAG 30551981 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||| | || |||||||| |||||||| || |||| || | | | ||||| || Sbjct 30551980 CAGAGACTGGACTTTGCTGGCAAGCAACTGGAAGATGGGTGTGCTCAGTCTGACTACAAC 30551921 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 | ||||||||||||||||||||| || ||| | ||||| ||||| Sbjct 30551920 ATTCAAAAGGAATCCACTCTTCATGGTGTGTTGAGACTTCGTGGTGG 30551874 >seq7 Length=64190696 Score = 102 bits (112), Expect = 9e-17 Identities = 108/140 (77%), Gaps = 2/140 (1%) Strand=Plus/Plus Query 27407 TGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTG 27466 |||| |||||||| ||||| || ||||||||||| || || || ||||| ||| | | | Sbjct 16112032 TGCAGATCTTTGTGAAGACCCTCACCGGCAAGACCATGACCCTCGAGGTCGAGCCCAGGG 16112091 Query 27467 ATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGA-CCAG 27525 | | || || ||| || || ||||| || ||||||||||| | |||| | || |||| Sbjct 16112092 ACACCAATGAGAATGCCAAAGCCAAAATCCAAGACAAGGAGGGCA-TCCTGCCGACCCAG 16112150 Query 27526 CAGCGTCTAATTTTTGCTGG 27545 |||| ||| ||||||||||| Sbjct 16112151 CAGCATCTGATTTTTGCTGG 16112170 >seq18 Length=51628521 Score = 93.3 bits (102), Expect = 5e-14 Identities = 115/155 (74%), Gaps = 3/155 (2%) Strand=Plus/Minus Query 27477 AAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAAT 27536 |||| | ||||| || || ||||| ||||| ||||||||||| || ||||| | || || Sbjct 525075 AAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGATGAGCAGAGACTGAT 525016 Query 27537 TTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGA 27596 |||||||| |||||||| || ||| |||| || | ||| | || | ||||| || Sbjct 525015 CTTTGCTGGCAAGCAACTGGAATATGGACGTA--CTTTCTGAC-ACAACATTCAAAATGA 524959 Query 27597 ATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTG 27631 ||||||||||||| | ||| | |||| |||| Sbjct 524958 GCCCACTCTTCATCTTGGGTTGAGACTTCATGGTG 524924 >seq13 Length=58133239 Score = 93.3 bits (102), Expect = 5e-14 Identities = 83/104 (80%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| |||||||| ||||| || || ||||| ||||| || |||||||| ||| | || Sbjct 44478540 ATGCAGATCTTTGTGAAGACCCTGACGGGCAAAACTATCACCCTTGAGGTCGAGCCCAGT 44478481 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGG 27509 || | ||||| |||| | || || ||||| || ||||||||||| Sbjct 44478480 GACACCATTGAAAATGTCAAAGCCAAAATCCAAGACAAGGAGGG 44478437 >seq38 Length=61073796 Score = 82.4 bits (90), Expect = 9e-11 Identities = 93/125 (74%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 32125 ACCATTGTCAACCTTGCTCAGAACTTTGTCGGTGCAAATAACCTGAACTTACTCGAGCCA 32184 |||||| | || | |||||||| ||||| ||| ||||| |||||| | | |||| Sbjct 22222642 ACCATTATAAATTTGGCTCAGAATTTTGTGGGTAGCAATAATCTGAACCTCTTGCAGCCC 22222701 Query 32185 TCTGGACAGTTTGGGACCCGGCTCGCCGGTGGCAAGGATGCTGCGAGCTCCCGTTACATC 32244 ||| |||||||| || |||| ||||||||||||| |||| || | || |||||| Sbjct 22222702 ATTGGTCAGTTTGGTACTAGGCTGCACGGTGGCAAGGATTCTGCTAGTCCTCGATACATC 22222761 Query 32245 TTCAC 32249 ||||| Sbjct 22222762 TTCAC 22222766 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570304675509360