Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lycaon_20pictus_20[genbank_20GCA_5F001887905.1_202016-12-01] 803 sequences; 2,358,143,818 total letters Query= NC_029255.1 Length=129563 Score E Sequences producing significant alignments: (Bits) Value seq34 203 3e-47 seq1 179 3e-40 seq27 154 1e-32 seq11 132 4e-26 seq5 98.7 8e-16 >seq34 Length=88915096 Score = 203 bits (224), Expect = 3e-47 Identities = 358/518 (69%), Gaps = 8/518 (2%) Strand=Plus/Minus Query 2170 ATGGGCATTGGAAACAAGGGAAAACTGCCATGGCCTCCTCTTAAAAATGAATTTAAACAT 2229 |||||||| || | || || | ||||| ||| | || || | |||||||| || || Sbjct 42955956 ATGGGCATCGGCAGGAACGGGGACCTGCCCTGGGCCCCGCTCAGGAATGAATTCAAGTAT 42955897 Query 2230 TTTCAAAAAATGACATCTTCTTCCACTGACTTA---AAACAGAATGTTGTAATTATGGGA 2286 || |||| |||||| | ||| ||| | ||||||||| | | ||||||||| Sbjct 42955896 TTCCAAAGAATGACCACGAACTCCTCTGTGGAAGGTAAACAGAATTTGGCAATTATGGGT 42955837 Query 2287 AGAAAGACATGGTTTTCACTTCCCATTAAAAGCA--GGCCTTTGAACAACAGAATAAATC 2344 | ||||||||||| || |||| | | ||| | | | ||| || ||||||| ||| Sbjct 42955836 TGGAAGACATGGTTCTCTATTCC--TGAGAAGAATCGACTTTTAAAGGACAGAATTAATA 42955779 Query 2345 TGGTTCTCAGTAGACACCTTAAAGAGCCACCACGTGGGGCTCACTTTGTTGCAAAAAGTA 2404 | |||||||| ||| |||| || || || |||| || ||||| ||| |||| |||| | Sbjct 42955778 TAGTTCTCAGCAGAGACCTCAAGGAACCTCCACAAGGAGCTCATTTTCTTGCCAAAA-TC 42955720 Query 2405 TAGATCACGCTCTGGAAATTATAATAGGACCAGAATTAAAAGACAGGGTGGATAAGATTT 2464 | ||| | ||| | || ||| |||||||||| | | | ||||| | | || Sbjct 42955719 TGGATGATGCTTTAAAACTTACTGAGCAACCAGAATTAGCAAATAAAGTGGACATGGATT 42955660 Query 2465 GGATAATTGGTGGAAGATCTGTCTATGAGGAGAGCATTACAAGATCTTGCAAACAGATGC 2524 ||||| | || || || ||||| ||| |||| ||| | | | | || | | | | Sbjct 42955659 GGATAGTGGGAGGCAGTTCTGTTTATAAGGAAGCCATGAACAAACCAGGCCATCTTAGAC 42955600 Query 2525 TGTTTTTAACAAGGATTCTGCAAAAATTTGAATGTGATACATACTTCCCAGAAATTAATC 2584 | ||| | ||||||||| |||| |||||||| |||| |||| |||||||||||| || Sbjct 42955599 TATTTGTGACAAGGATTATGCATGAATTTGAAAGTGACACATTTTTCCCAGAAATTGATT 42955540 Query 2585 TTACCAAATACAAACAACTTACTGAATTTCCAGGTGTTCCCTCTGCCGTGCAAGAAGAAA 2644 | ||||| |||| | | |||| |||||||||| |||| || || || || | Sbjct 42955539 TGGAGAAATATAAACTTCCGCCAGAATACCCAGGTGTTCTTTCTGATGTCCAGGAGGAGA 42955480 Query 2645 ATGGAATTAGATACAAATTTGAGATATATGaaaaaaaa 2682 | || |||| ||||||||||| ||||||| || ||| Sbjct 42955479 AAGGCATTAAGTACAAATTTGAAGTATATGAGAAGAAA 42955442 >seq1 Length=122647182 Score = 179 bits (198), Expect = 3e-40 Identities = 294/421 (70%), Gaps = 6/421 (1%) Strand=Plus/Minus Query 2263 AAACAGAATGTTGTAATTATGGGAAGAAAGACATGGTTTTCACTTCCCATTAAAAGCA-- 2320 ||||||||| | || |||||||| || ||||||||||| || |||| | | ||| | Sbjct 42938357 AAACAGAATTTGGTGATTATGGGTAGGAAGACATGGTTCTCTATTCC--TGAGAAGAATC 42938300 Query 2321 GGCCTTTGAACAACAGAATAAATCTGGTTCTCAGTAGACACCTTAAAGAGCCACCACGTG 2380 | ||||| || ||||||| ||| | |||||||| ||| | | || || || |||| | Sbjct 42938299 GACCTTTAAAGGACAGAATTAATATAGTTCTCAGCAGATATC--AAGGAACCTCCACAAG 42938242 Query 2381 GGGCTCACTTTGTTGCAAAAAGTATAGATCACGCTCTGGAAATTATAATAGGACCAGAAT 2440 | |||| ||| |||| |||||| | ||| | || | || ||| |||||||| Sbjct 42938241 GAACTCATTTTCTTGCCAAAAGTCTGGATGATACTTTAAAACTTACTGAGCAACCAGAAT 42938182 Query 2441 TAAAAGACAGGGTGGATAAGATTTGGATAATTGGTGGAAGATCTGTCTATGAGGAGAGCA 2500 || | | | ||||| | | ||||| || | | || || ||||| ||| |||| || Sbjct 42938181 TAGCAAATAAAGTGGACATGGTTTGGCTAGTGAGAGGCAGTTCTGTTTATAAGGAAGCCA 42938122 Query 2501 TTACAAGATCTTGCAAACAGATGCTGTTTTTAACAAGGATTCTGCAAAAATTTGAATGTG 2560 | | | | | || | | | || ||| | ||||||||| |||| |||||||| ||| Sbjct 42938121 TGAACAAACCAGGCCATCTTAGACTATTTGTGACAAGGATTATGCATGAATTTGAAAGTG 42938062 Query 2561 ATACATACTTCCCAGAAATTAATCTTACCAAATACAAACAACTTACTGAATTTCCAGGTG 2620 | |||| |||||||||||| || | ||||| |||| || | |||| ||||||| Sbjct 42938061 ACACATTTTTCCCAGAAATTGATTTGGAGAAATATAAACTTCTACCAGAATACCCAGGTG 42938002 Query 2621 TTCCCTCTGCCGTGCAAGAAGAAAATGGAATTAGATACAAATTTGAGATATATGaaaaaa 2680 ||| |||| || || || || || || |||| ||||||||||| ||||||| || | Sbjct 42938001 TTCTTTCTGATGTCCAGGAGGAGAAAGGCATTAAGTACAAATTTGAAGTATATGAGAAGA 42937942 Query 2681 a 2681 | Sbjct 42937941 A 42937941 Score = 127 bits (140), Expect = 2e-24 Identities = 287/431 (67%), Gaps = 4/431 (1%) Strand=Plus/Minus Query 2263 AAACAGAATGTTGTAATTATGGGAAGAAAGACATGGTTTTCACTTCCCATTAAAAGCAGG 2322 ||||||||| | || |||||||| || ||||||||||| || |||||| || | Sbjct 77120346 AAACAGAATTTGGTGATTATGGGTAGGAAGACATGGTTCTCTATTCCCAAGAACCACCAA 77120287 Query 2323 CCTTTGAACAACAGAATAAATCTGGTTCTCAGTAGACACCTTAAAGAGCCACCACGTGGG 2382 ||||| || ||||||| ||| | |||||||| || |||||| || || |||| || Sbjct 77120286 CCTTTAAAGGACAGAATTAATTTAGTTCTCAGCGGAGACCTTAGGGAACCTCCACAAGGA 77120227 Query 2383 GCTCACTTTGTTGCAAAAAGTATAGATCACGCTCTGGAAATTATAATAGGACCAGAATTA 2442 |||| ||| |||| |||||| | ||| | || | || |||| | | |||||||| Sbjct 77120226 ACTCATTTTCTTGCCAAAAGTCTGGATGATGCCTTAAAACTTATTGAACAAGCAGAATTA 77120167 Query 2443 AAAGACAGGGTGGATAAGATTTGGATAATTGGTGGAAGATCTGTCTATGAGGAGAGCATT 2502 || | | |||| | |||||||| | || | || | ||| ||| |||| ||| Sbjct 77120166 GAAAATAAAATGGACATAGTTTGGATAGTGGGAAGTAGTTATGTTTATAAGGAACCCATG 77120107 Query 2503 ACAAGATCTTGCAAACAGATGCTGTTTTTAACAAGGATTCTGCAAAAATTTGAATGTGAT 2562 | | | || | | ||| | | | ||||||| | | |||||| |||| Sbjct 77120106 AAGAAGCCAGGCCATTTTAGGCTATCTGCGAGAAGGATTACAGAGGAGTTTGAAAGTGAC 77120047 Query 2563 ACA----TACTTCCCAGAAATTAATCTTACCAAATACAAACAACTTACTGAATTTCCAGG 2618 ||| || || |||||||| || | ||||| |||| || | |||| |||| Sbjct 77120046 ACATTTTTATTTGTCAGAAATTGATTTGGAGAAATATAAACTTCTGCCAGAATACTCAGG 77119987 Query 2619 TGTTCCCTCTGCCGTGCAAGAAGAAAATGGAATTAGATACAAATTTGAGATATATGaaaa 2678 ||| | |||| |||| || ||||| || | || ||||||||||| ||||||| || Sbjct 77119986 TGTCCTTTCTGATATGCAGGAGGAAAAAGGCAGTAAGTACAAATTTGAAGTATATGAGAA 77119927 Query 2679 aaaaaCATAAT 2689 || | |||| Sbjct 77119926 GAACAATTAAT 77119916 Score = 118 bits (130), Expect = 9e-22 Identities = 110/140 (79%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 3245 GTTGTTGATGAGCTCTTCCGAGATGGGGTAAACTGGGGGCGCATTGTTGCTTTCTTTGAG 3304 || || || ||||||||| | |||||||| ||||||||| | || || || ||||||||| Sbjct 13703428 GTGGTGGAGGAGCTCTTCAGGGATGGGGTGAACTGGGGGAGGATCGTGGCCTTCTTTGAG 13703487 Query 3305 TTTGGTGGTGTTATGTGTGTGGAAAGCGTCAATAGAGGCATACCCTCCCTCGTTGACAAC 3364 || ||||| || ||||||||||| |||||||| | | || | |||| || |||||| Sbjct 13703488 TTCGGTGGGGTCATGTGTGTGGAGAGCGTCAACCGGGAGATGTCGCCCCTGGTGGACAAC 13703547 Query 3365 ATTGCCGCGTGGATGACAGA 3384 || ||| ||||||||| || Sbjct 13703548 ATCGCCCTGTGGATGACTGA 13703567 >seq27 Length=31376848 Score = 154 bits (170), Expect = 1e-32 Identities = 172/230 (75%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 1296 ACATGGCAAAAAGTTAAAGCATCAAGCCCAGAAAACATGGCCACTTTTAGTAATGACCAC 1355 |||||||||||||| || | |||| |||||||||| ||| || || || | || Sbjct 16880029 ACATGGCAAAAAGTCAAGCCTGTGAGCCTGGAAAACATGGTCACCTTCAGCAAGAATCAT 16880088 Query 1356 GGGGTTGTTGTTCAGCCAGCATACAAAGATAAAATGAACATAACTGAGCTTGGACTACAA 1415 ||||| || || ||||| || ||||| || || || || | || |||| | || | Sbjct 16880089 GGGGTCGTGGTCCAGCCTGCCTACAAGGACAAGATAAATGTCACCCAGCTGGAGCTCAAG 16880148 Query 1416 AACACAACTATAACCTTCTGGAACACAACATTGGATGATGAAGGGTGCTACAAGTGTTTA 1475 ||| |||| || ||||||||||| || || |||| ||||||||||| |||||||| | Sbjct 16880149 AACTCAACCATTACCTTCTGGAATACCACCCTGGARGATGAAGGGTGTTACAAGTGCCTC 16880208 Query 1476 TTTAACACTTTTGGATCTGGGAAGATGTCAGGAATAGGGTGTCTAACCCT 1525 || ||||||||||| ||||||||||| || |||| || || || ||||| Sbjct 16880209 TTCAACACTTTTGGTTCTGGGAAGATCTCGGGAACAGCCTGCCTCACCCT 16880258 >seq11 Length=53741443 Score = 132 bits (146), Expect = 4e-26 Identities = 235/339 (69%), Gaps = 9/339 (3%) Strand=Plus/Plus Query 2137 ACTCTAAACTGTATTGCAGCTGTCTCTGAAAATATGGGCATTGGAAACAAGGGAAAACTG 2196 || || ||||| || | || || || | || ||||||| || | || || | ||| Sbjct 16731076 ACGCTGAACTGCATCGTCGCCGTGTCCCAGAACCTGGGCATCGGCAGGAACGGGGACCTG 16731135 Query 2197 CCATGGCCTCCTCTTAAAAATGAATTTAAACATTTTCAAAAAATGAC----ATCTTCTTC 2252 || ||||| || || | |||||||| || |||| |||| |||||| | ||||| | Sbjct 16731136 CCCTGGCCCCCGCTCAGGAATGAATTCAAGTATTTCCAAAGAATGACCACGAACTTCT-C 16731194 Query 2253 CACTGACTTAAAACAGAATGTTGTAATTATGGGAAGAAAGACATGGTTTTCACTTCCCAT 2312 | || ||||||||| | || |||||||| || ||||||||||| || |||| | Sbjct 16731195 CGTGGAAGGTAAACAGAATTTGGTGATTATGGGTAGGAAGACATGGTTCTCTATTCC--T 16731252 Query 2313 TAAAAGCA--GGCCTTTGAACAACAGAATAAATCTGGTTCTCAGTAGACACCTTAAAGAG 2370 | ||| | | ||||| || ||||||| ||| | |||||||| ||| |||| || || Sbjct 16731253 GAGAAGAATCGACCTTTAAAGGACAGAATTAATATAGTTCTCAGCAGAGACCTCAAGGAA 16731312 Query 2371 CCACCACGTGGGGCTCACTTTGTTGCAAAAAGTATAGATCACGCTCTGGAAATTATAATA 2430 || |||| || ||||| ||| |||| |||||| | ||| | ||| | || ||| Sbjct 16731313 CCTCCACAAGGAGCTCATTTTCTTGCCAAAAGTCTGGATGATGCTTTAAAACTTACTGAG 16731372 Query 2431 GGACCAGAATTAAAAGACAGGGTGGATAAGATTTGGATA 2469 || ||||||| | | | ||||| | | |||||||| Sbjct 16731373 CAACTAGAATTAGCAAATAAAGTGGACATGGTTTGGATA 16731411 >seq5 Length=63240551 Score = 98.7 bits (108), Expect = 8e-16 Identities = 335/515 (65%), Gaps = 8/515 (2%) Strand=Plus/Minus Query 2170 ATGGGCATTGGAAACAAGGGAAAACTGCCATGGCCTCCTCTTAAAAATGAATTTAAACAT 2229 || ||||| || || || |||| || || ||||| || | | |||||||| | || Sbjct 60456853 ATTGGCATAGGCAAGAACAGAAACCTACCCTGGCCCCCATTCAGGAATGAATTCAGGTAT 60456794 Query 2230 TTTCAAAAAATGACATCTTCTTCCACTGACTTAAAACAGAATGTTGTAATTATGGGAAGA 2289 || | || |||||| | | || || ||| |||||| |||| ||||||||||| Sbjct 60456793 TTCCCAAGAATGACCACAACCTCAGTAGAGGGAAA-CAGAATTTTGTGATTATGGGAAGG 60456735 Query 2290 AAGACATGGTTTTCACTTCCCATTAAAAGCAGGCCTTTGAACAACAGAATAAATCTGGTT 2349 |||||||| || | |||||| || | | | | ||| || ||||||| ||| | ||| Sbjct 60456734 AAGACATGACTTGCTCTTCCCTAGAAGAACTGACTTTTAAAGGACAGAATTAATTTAGTT 60456675 Query 2350 CTCAGTAGACACCTTAAAGAGCCACCACGTGGGGCTCACTTTGTTGCAAAAAGTATAGAT 2409 ||||| ||| | || || | || ||| || ||| | ||| | || ||||| | ||| Sbjct 60456674 CTCAGGAGAAAACTCAAGGGACCTCCATAAGGAGCTTATTTTCTAGC-CAAAGTCTGGAT 60456616 Query 2410 CACGCTCTGGAAATTATAATAGGACCAGAATTAAAAGACAGGGTGGATAAGATTTGGATA 2469 | || | || |||| | ||||||||||| | | | ||||| | |||||| | Sbjct 60456615 TATGCCTTAAAACTTATTAACCAACCAGAATTAACAAAGAAAGTGGACGTGGTTTGGACA 60456556 Query 2470 ATTGGTGGAAGATCTGTCTATGAGGAGAGCA-TTACAAGATCTTGCAAACAGATGCTGTT 2528 | || | || | ||| ||| | || || ||||| | || | | | || || Sbjct 60456555 GTGGGAGACAGTTATGTGTATAAAGAAGCCACAAACAAG-CCAGGCCATCTCAAACTATT 60456497 Query 2529 TTTAACAAGGATTCTGCAAAAATTTGAATGTGATACATACTTC--CCAGAAATTAATCTT 2586 | ||| |||| ||| ||||||| | |||| ||| ||||||| | || | Sbjct 60456496 GGTGACAGGGATCACGCAGGCATTTGAAAAT--AACATTTTTCTTCCAGAAAATGATTTG 60456439 Query 2587 ACCAAATACAAACAACTTACTGAATTTCCAGGTGTTCCCTCTGCCGTGCAAGAAGAAAAT 2646 | ||| || | ||| | |||| ||| |||||| |||| || | || ||||| Sbjct 60456438 GAGATATAGAAGCTTCTTCCAGAATACCCAAGTGTTCTTTCTGATGTCCGGGAGGAAAAA 60456379 Query 2647 GGAATTAGATACAAATTTGAGATATATGaaaaaaa 2681 | |||| || |||||||| | ||| |||| || Sbjct 60456378 AGTATTAAGTAGAAATTTGAAGTGTATAAAAAGAA 60456344 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 414472743696892